Wall clock time and date at job start Mon Mar 30 2020 08:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 H 1.09005 * 109.47317 * 30.00222 * 3 2 1 5 5 C 1.53002 * 109.47149 * 270.00087 * 3 2 1 6 6 C 1.53001 * 109.47039 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47371 * 59.99973 * 6 5 3 8 8 C 1.53002 * 109.47061 * 300.00014 * 7 6 5 9 9 H 1.08998 * 109.46874 * 299.99899 * 8 7 6 10 10 N 1.46496 * 109.47161 * 180.02562 * 8 7 6 11 11 C 1.36941 * 119.99670 * 293.72104 * 10 8 7 12 12 H 1.07998 * 120.00118 * 237.63119 * 11 10 8 13 13 C 1.38815 * 119.99862 * 57.64111 * 11 10 8 14 14 N 1.31611 * 120.00040 * 37.19197 * 13 11 10 15 15 Si 1.86805 * 119.99874 * 217.19719 * 13 11 10 16 16 H 1.48496 * 109.47253 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46996 * 299.99769 * 15 13 11 18 18 H 1.48510 * 109.47032 * 59.99546 * 15 13 11 19 19 C 1.46499 * 120.00248 * 113.72602 * 10 8 7 20 20 C 1.54268 * 110.02990 * 237.90433 * 19 10 8 21 21 C 1.54967 * 104.16009 * 217.13385 * 20 19 10 22 22 C 1.54889 * 102.77346 * 37.89164 * 21 20 19 23 23 C 1.53874 * 110.03406 * 120.68970 * 19 10 8 24 24 C 1.53001 * 109.47268 * 150.00055 * 3 2 1 25 25 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47149 * 299.99576 * 1 2 3 27 27 H 1.09002 * 109.47404 * 60.00225 * 1 2 3 28 28 H 1.08999 * 109.47155 * 60.00241 * 5 3 2 29 29 H 1.08998 * 109.46874 * 299.99942 * 5 3 2 30 30 H 1.09005 * 109.47324 * 300.00072 * 6 5 3 31 31 H 1.09004 * 109.47097 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.47174 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47194 * 59.99717 * 7 6 5 34 34 H 0.97007 * 119.99800 * 180.02562 * 14 13 11 35 35 H 1.08990 * 110.01433 * 359.29853 * 19 10 8 36 36 H 1.09001 * 110.49087 * 335.78547 * 20 19 10 37 37 H 1.09003 * 110.48592 * 98.42889 * 20 19 10 38 38 H 1.08998 * 110.72070 * 279.57931 * 21 20 19 39 39 H 1.08999 * 110.92099 * 156.29547 * 21 20 19 40 40 H 1.09000 * 110.48592 * 203.40325 * 22 21 20 41 41 H 1.09001 * 110.48916 * 80.76020 * 22 21 20 42 42 H 1.08993 * 110.03406 * 238.56967 * 23 19 10 43 43 H 1.09007 * 110.03128 * 359.97438 * 23 19 10 44 44 H 1.08998 * 109.47194 * 59.99789 * 24 3 2 45 45 H 1.09004 * 109.47214 * 300.00250 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1893 3.1261 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2350 10 7 5.2732 2.6198 1.4117 11 6 6.2294 1.7197 1.0234 12 1 6.6245 1.0106 1.7357 13 6 6.6910 1.7189 -0.2858 14 7 6.8450 2.8562 -0.9299 15 14 7.0933 0.1034 -1.1332 16 1 7.5628 0.3733 -2.5159 17 1 8.1596 -0.6004 -0.3764 18 1 5.8766 -0.7469 -1.1811 19 6 5.5416 3.5422 2.5177 20 6 6.7911 4.3916 2.2060 21 6 7.5022 4.5365 3.5753 22 6 7.2850 3.1464 4.2228 23 6 5.8552 2.7511 3.7997 24 6 3.3589 1.2633 0.7212 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.2568 1.8015 -1.9563 29 1 2.8829 1.0775 -1.9563 30 1 2.1756 3.8630 -0.9285 31 1 2.9879 3.5010 -2.4702 32 1 4.6328 4.1217 -0.7210 33 1 4.8542 2.4319 -1.2354 34 1 7.1672 2.8555 -1.8449 35 1 4.6805 4.1904 2.6802 36 1 7.4356 3.8754 1.4944 37 1 6.5015 5.3691 1.8203 38 1 7.0331 5.3184 4.1725 39 1 8.5649 4.7390 3.4424 40 1 7.3561 3.2158 5.3083 41 1 8.0091 2.4286 3.8373 42 1 5.1468 3.0159 4.5846 43 1 5.8072 1.6807 3.5990 44 1 4.0241 0.5694 0.2074 45 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:42 Heat of formation + Delta-G solvation = -54.771953 kcal Electronic energy + Delta-G solvation = -22516.184578 eV Core-core repulsion = 19532.938902 eV Total energy + Delta-G solvation = -2983.245675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33965 -39.00324 -37.37277 -35.02858 -33.20215 -30.93293 -30.00957 -29.20449 -27.99920 -27.20109 -25.39047 -23.05913 -22.43167 -21.21972 -20.92320 -20.27991 -18.26645 -17.19766 -16.88630 -16.49307 -16.23561 -16.10459 -15.89074 -15.17015 -14.92044 -14.68701 -14.30002 -14.02435 -13.82421 -13.61957 -13.27223 -13.15154 -12.84288 -12.60822 -12.51485 -12.37395 -12.06335 -11.88793 -11.85762 -11.74505 -11.71115 -11.61611 -11.28717 -11.25578 -11.19522 -11.10357 -10.94783 -10.31023 -9.77693 -8.34748 -7.56295 -5.45695 1.39213 1.45379 1.52899 2.51219 2.88287 3.16712 3.64304 3.91941 4.06311 4.10054 4.12489 4.27501 4.36667 4.46542 4.50149 4.57678 4.58838 4.66158 4.75688 4.79390 4.83577 4.86353 4.88800 4.91064 5.02280 5.07983 5.09318 5.11232 5.24866 5.25914 5.32833 5.35696 5.43527 5.47696 5.58475 5.66242 5.76267 5.80734 5.88029 6.00845 6.12110 6.40671 6.71774 7.38460 7.96327 8.66059 9.05540 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.007877 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.179769 B = 3553.625979 C = 4241.948645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.098 3.902 4 H 0.074 0.926 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.192 3.808 9 H 0.051 0.949 10 N -0.584 5.584 11 C -0.277 4.277 12 H 0.027 0.973 13 C 0.035 3.965 14 N -0.853 5.853 15 Si 0.891 3.109 16 H -0.293 1.293 17 H -0.280 1.280 18 H -0.285 1.285 19 C 0.163 3.837 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.103 4.103 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.250 0.750 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 1.807 3.902 10.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.040 3.960 4 H 0.092 0.908 5 C -0.167 4.167 6 C -0.151 4.151 7 C -0.155 4.155 8 C 0.086 3.914 9 H 0.070 0.930 10 N -0.305 5.305 11 C -0.407 4.407 12 H 0.044 0.956 13 C -0.169 4.169 14 N -0.490 5.490 15 Si 0.719 3.281 16 H -0.219 1.219 17 H -0.206 1.206 18 H -0.211 1.211 19 C 0.057 3.943 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.165 4.165 24 C -0.143 4.143 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.526 1.730 3.745 10.381 hybrid contribution 0.515 -0.863 -1.022 1.434 sum -9.011 0.866 2.723 9.453 Atomic orbital electron populations 1.22963 0.79853 1.03563 1.00775 1.87910 1.21362 1.28968 1.95214 1.22139 0.94482 0.83873 0.95468 0.90807 1.21925 1.00765 0.97045 0.96937 1.21537 0.97199 0.95914 1.00416 1.22094 0.95255 1.00644 0.97519 1.20329 0.86225 0.92748 0.92120 0.93042 1.43976 1.10789 1.38834 1.36885 1.18096 1.19020 1.09828 0.93770 0.95607 1.25576 0.95064 0.96027 1.00242 1.70479 1.41806 1.25217 1.11453 0.86625 0.78007 0.85320 0.78147 1.21882 1.20571 1.21111 1.21277 0.94882 0.89936 0.88190 1.22638 0.98706 0.97921 0.96901 1.22410 0.99572 0.97098 0.96194 1.22178 0.96484 0.96558 0.99585 1.22462 0.96575 0.99975 0.97461 1.21766 0.94169 0.99529 0.98806 0.88715 0.93097 0.93178 0.90391 0.94124 0.91142 0.92318 0.94767 0.92279 0.94022 0.93173 0.92381 0.94647 0.90700 0.92523 0.90678 0.94012 0.91769 0.93776 0.94314 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.82 113.37 1.23 1.78 16 2 O -0.41 -13.97 10.35 -148.98 -1.54 -15.51 16 3 C 0.10 3.31 2.61 30.60 0.08 3.39 16 4 H 0.07 2.15 7.79 -2.38 -0.02 2.13 16 5 C -0.13 -4.24 5.54 30.60 0.17 -4.07 16 6 C -0.11 -3.81 5.92 30.60 0.18 -3.63 16 7 C -0.12 -5.01 3.93 30.60 0.12 -4.89 16 8 C 0.19 8.16 2.63 44.98 0.12 8.28 16 9 H 0.05 2.00 7.58 -2.39 -0.02 1.99 16 10 N -0.58 -27.33 2.29 -650.37 -1.49 -28.82 16 11 C -0.28 -14.55 6.08 84.03 0.51 -14.04 16 12 H 0.03 1.48 7.40 -2.91 -0.02 1.46 16 13 C 0.04 1.86 3.48 84.86 0.30 2.16 16 14 N -0.85 -46.20 10.88 21.65 0.24 -45.96 16 15 Si 0.89 43.59 29.68 68.60 2.04 45.63 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 18 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 19 C 0.16 6.75 3.44 45.72 0.16 6.91 16 20 C -0.12 -5.13 6.42 31.70 0.20 -4.92 16 21 C -0.11 -3.83 6.91 31.91 0.22 -3.61 16 22 C -0.11 -3.71 6.83 31.67 0.22 -3.49 16 23 C -0.13 -4.64 6.27 31.32 0.20 -4.44 16 24 C -0.10 -4.27 4.72 30.58 0.14 -4.12 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.01 8.09 -2.39 -0.02 1.00 16 27 H 0.05 1.00 7.87 -2.39 -0.02 0.98 16 28 H 0.08 2.10 7.87 -2.39 -0.02 2.08 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.03 1.62 7.96 -2.39 -0.02 1.60 16 33 H 0.06 2.96 4.89 -2.39 -0.01 2.95 16 34 H 0.25 13.37 8.31 -92.70 -0.77 12.59 16 35 H 0.05 1.94 7.60 -2.39 -0.02 1.92 16 36 H 0.06 2.95 6.80 -2.39 -0.02 2.94 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.85 6.94 -2.38 -0.02 1.83 16 44 H 0.04 1.88 7.53 -2.39 -0.02 1.86 16 45 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -57.84 336.31 4.00 -53.84 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.92 Total: 15.52 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 3.84 Total: -24.69 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.25 Total: -74.78 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.54 Total: -15.51 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.04 Total: 45.63 kcal Total: -57.84 4.00 -53.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.936 kcal (2) G-P(sol) polarization free energy of solvation -57.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds