Wall clock time and date at job start Mon Mar 30 2020 08:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99956 * 2 1 4 4 H 1.08997 * 109.47281 * 330.00314 * 3 2 1 5 5 C 1.53002 * 109.46971 * 90.00097 * 3 2 1 6 6 C 1.53001 * 109.46958 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47131 * 300.00043 * 6 5 3 8 8 C 1.52996 * 109.46997 * 60.00306 * 7 6 5 9 9 H 1.09006 * 109.46911 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47560 * 59.99604 * 8 7 6 11 11 C 1.36938 * 119.99870 * 6.34160 * 10 8 7 12 12 H 1.07996 * 119.99761 * 236.39583 * 11 10 8 13 13 C 1.38808 * 120.00027 * 56.39172 * 11 10 8 14 14 N 1.31625 * 119.99961 * 193.18478 * 13 11 10 15 15 Si 1.86799 * 120.00152 * 13.18767 * 13 11 10 16 16 H 1.48499 * 109.47122 * 84.44684 * 15 13 11 17 17 H 1.48504 * 109.47263 * 204.44109 * 15 13 11 18 18 H 1.48497 * 109.47188 * 324.44478 * 15 13 11 19 19 C 1.46496 * 120.00064 * 186.33338 * 10 8 7 20 20 C 1.54270 * 110.03669 * 238.66080 * 19 10 8 21 21 C 1.54966 * 104.16173 * 217.14011 * 20 19 10 22 22 C 1.54885 * 102.77520 * 37.88680 * 21 20 19 23 23 C 1.53880 * 110.03159 * 121.44328 * 19 10 8 24 24 C 1.53004 * 109.47141 * 299.99508 * 8 7 6 25 25 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46899 * 299.99899 * 1 2 3 27 27 H 1.08995 * 109.47058 * 60.00104 * 1 2 3 28 28 H 1.08997 * 109.46950 * 299.99637 * 5 3 2 29 29 H 1.08997 * 109.46941 * 60.00009 * 5 3 2 30 30 H 1.08997 * 109.47202 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.47462 * 59.99974 * 6 5 3 32 32 H 1.08993 * 109.46843 * 299.99919 * 7 6 5 33 33 H 1.09006 * 109.46921 * 179.97438 * 7 6 5 34 34 H 0.96995 * 119.99617 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.01910 * 0.05742 * 19 10 8 36 36 H 1.09000 * 110.48281 * 335.78511 * 20 19 10 37 37 H 1.09006 * 110.48610 * 98.42464 * 20 19 10 38 38 H 1.08997 * 110.71580 * 279.56816 * 21 20 19 39 39 H 1.09001 * 110.91959 * 156.29478 * 21 20 19 40 40 H 1.09003 * 110.48117 * 203.40502 * 22 21 20 41 41 H 1.08995 * 110.60155 * 80.82346 * 22 21 20 42 42 H 1.08998 * 110.03138 * 238.57070 * 23 19 10 43 43 H 1.09002 * 110.02672 * 359.95405 * 23 19 10 44 44 H 1.09001 * 109.47539 * 300.01043 * 24 8 7 45 45 H 1.08991 * 109.47375 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8406 3.1688 1.4425 7 6 4.1894 3.1260 0.7214 8 6 3.9819 2.6602 -0.7211 9 1 4.9429 2.6293 -1.2347 10 7 3.0882 3.5931 -1.4118 11 6 2.6892 4.7462 -0.7903 12 1 1.6371 4.9572 -0.6675 13 6 3.6368 5.6438 -0.3180 14 7 3.2773 6.6113 0.4988 15 14 5.4223 5.4786 -0.8415 16 1 5.6202 6.1580 -2.1471 17 1 6.2980 6.1061 0.1806 18 1 5.7682 4.0406 -0.9743 19 6 2.6215 3.2925 -2.7675 20 6 3.0415 4.4199 -3.7332 21 6 1.8425 4.5519 -4.7061 22 6 0.6222 4.3350 -3.7773 23 6 1.0840 3.2381 -2.7958 24 6 3.3591 1.2627 -0.7211 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2569 1.8014 1.9563 29 1 2.8830 1.0774 1.9563 30 1 2.9880 3.5009 2.4702 31 1 2.1757 3.8631 0.9286 32 1 4.8542 2.4319 1.2354 33 1 4.6329 4.1218 0.7210 34 1 3.9395 7.2387 0.8285 35 1 3.0349 2.3410 -3.1021 36 1 3.1947 5.3514 -3.1884 37 1 3.9450 4.1409 -4.2755 38 1 1.8840 3.7814 -5.4759 39 1 1.8139 5.5443 -5.1562 40 1 -0.2390 3.9945 -4.3522 41 1 0.3820 5.2520 -3.2392 42 1 0.7513 2.2606 -3.1448 43 1 0.6851 3.4346 -1.8006 44 1 4.0239 0.5685 -0.2071 45 1 3.2116 0.9306 -1.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:47 Heat of formation + Delta-G solvation = -28.935524 kcal Electronic energy + Delta-G solvation = -23296.869825 eV Core-core repulsion = 20314.744501 eV Total energy + Delta-G solvation = -2982.125324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.31994 -37.42570 -36.12079 -32.86773 -31.68724 -29.51819 -28.90603 -27.91244 -26.55709 -25.91778 -23.52034 -21.79564 -20.99321 -19.93836 -19.19655 -18.60130 -16.63361 -16.00547 -15.54116 -15.07302 -14.87535 -14.61045 -14.16251 -13.99898 -13.34265 -12.97205 -12.90667 -12.64547 -12.41070 -11.88610 -11.78531 -11.73226 -11.36504 -11.21481 -10.77445 -10.68687 -10.52246 -10.37348 -10.31845 -10.24264 -10.07391 -9.89149 -9.71095 -9.65593 -9.55650 -9.46289 -9.21600 -8.74332 -8.29472 -6.38071 -5.99663 -3.61518 3.35934 3.46179 3.51313 4.23290 4.50685 4.95514 5.22927 5.40029 5.41060 5.47517 5.50637 5.62757 5.64275 5.68062 5.84163 5.93899 6.07425 6.09529 6.18506 6.20552 6.25688 6.28210 6.34821 6.35233 6.39474 6.45721 6.47296 6.55505 6.59459 6.60917 6.67346 6.76713 6.79513 6.96673 7.08047 7.13996 7.19155 7.22081 7.28223 7.72107 7.81602 8.14077 8.55498 9.09901 9.68769 10.23635 11.11744 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.011287 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.132201 B = 2480.090420 C = 3578.206834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.398 6.398 3 C 0.096 3.904 4 H 0.078 0.922 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.105 4.105 8 C 0.166 3.834 9 H 0.040 0.960 10 N -0.596 5.596 11 C -0.261 4.261 12 H 0.071 0.929 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.864 3.136 16 H -0.292 1.292 17 H -0.303 1.303 18 H -0.249 1.249 19 C 0.172 3.828 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.122 0.878 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -8.463 -3.744 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.318 6.318 3 C 0.039 3.961 4 H 0.096 0.904 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.142 4.142 8 C 0.061 3.939 9 H 0.057 0.943 10 N -0.319 5.319 11 C -0.389 4.389 12 H 0.089 0.911 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.694 3.306 16 H -0.220 1.220 17 H -0.230 1.230 18 H -0.174 1.174 19 C 0.065 3.935 20 C -0.175 4.175 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.161 4.161 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.732 -8.482 -3.599 9.611 hybrid contribution 0.895 0.296 -0.154 0.955 sum -1.837 -8.187 -3.753 9.191 Atomic orbital electron populations 1.22644 0.82288 1.01459 0.99765 1.87829 1.18731 1.30030 1.95182 1.22177 0.95337 0.82828 0.95771 0.90422 1.21972 0.99916 0.98532 0.96410 1.21735 0.98533 0.95907 0.99265 1.21601 0.97492 1.00438 0.94649 1.20784 0.92590 0.87632 0.92931 0.94296 1.44277 1.56213 1.20706 1.10743 1.18170 0.92624 0.94708 1.33440 0.91133 1.25891 0.97904 0.94515 0.96340 1.69803 1.34446 1.17495 1.32090 0.87491 0.86199 0.79388 0.77504 1.21983 1.23010 1.17435 1.21035 0.91986 0.94900 0.85550 1.22836 0.95774 1.02271 0.96635 1.22399 0.96305 0.99912 0.97274 1.22228 0.96483 0.99609 0.97048 1.22550 0.98194 0.96448 0.99646 1.22067 0.95563 0.98994 0.99433 0.90691 0.94525 0.94398 0.93429 0.93248 0.94218 0.86039 0.94258 0.91269 0.92747 0.93147 0.89663 0.93802 0.92894 0.92784 0.93513 0.91609 0.93989 0.90945 0.92591 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.82 101.05 1.09 1.58 16 2 O -0.40 -6.86 10.35 -35.23 -0.36 -7.22 16 3 C 0.10 1.72 2.45 -26.73 -0.07 1.66 16 4 H 0.08 1.49 5.30 -51.93 -0.28 1.21 16 5 C -0.13 -2.37 5.54 -26.73 -0.15 -2.52 16 6 C -0.12 -2.42 5.43 -26.73 -0.15 -2.57 16 7 C -0.10 -2.19 4.36 -26.73 -0.12 -2.31 16 8 C 0.17 3.37 2.06 -67.93 -0.14 3.23 16 9 H 0.04 0.83 6.24 -51.93 -0.32 0.50 16 10 N -0.60 -12.56 1.03 -156.88 -0.16 -12.72 16 11 C -0.26 -6.32 4.40 -15.06 -0.07 -6.38 16 12 H 0.07 1.92 7.21 -52.49 -0.38 1.54 16 13 C 0.06 1.44 3.99 -17.43 -0.07 1.37 16 14 N -0.90 -25.20 13.97 55.49 0.78 -24.42 16 15 Si 0.86 20.91 24.78 -169.99 -4.21 16.70 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.25 -5.67 4.20 56.52 0.24 -5.43 16 19 C 0.17 3.25 2.94 -66.81 -0.20 3.05 16 20 C -0.14 -2.56 6.42 -25.03 -0.16 -2.72 16 21 C -0.12 -1.93 6.91 -24.70 -0.17 -2.10 16 22 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 23 C -0.13 -2.25 5.49 -25.61 -0.14 -2.39 16 24 C -0.12 -2.20 4.85 -26.73 -0.13 -2.33 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 27 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 2.86 4.84 -51.93 -0.25 2.61 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.61 2.89 -51.93 -0.15 1.46 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.05 0.91 6.64 -51.93 -0.34 0.57 16 36 H 0.08 1.89 6.77 -51.93 -0.35 1.54 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.40 5.86 -51.93 -0.30 1.10 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -26.07 315.20 -7.76 -33.83 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.92 Total: 3.59 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.63 Total: -14.50 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.61 Total: -37.14 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.36 Total: -7.22 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.21 Total: 16.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.07 -7.76 -33.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -26.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds