Wall clock time and date at job start Mon Mar 30 2020 08:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99956 * 2 1 4 4 H 1.08997 * 109.47281 * 330.00314 * 3 2 1 5 5 C 1.53002 * 109.46971 * 90.00097 * 3 2 1 6 6 C 1.53001 * 109.46958 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47131 * 300.00043 * 6 5 3 8 8 C 1.52996 * 109.46997 * 60.00306 * 7 6 5 9 9 H 1.09006 * 109.46911 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47560 * 59.99604 * 8 7 6 11 11 C 1.36938 * 119.99870 * 6.34160 * 10 8 7 12 12 H 1.07996 * 119.99761 * 236.39583 * 11 10 8 13 13 C 1.38808 * 120.00027 * 56.39172 * 11 10 8 14 14 N 1.31625 * 119.99961 * 193.18478 * 13 11 10 15 15 Si 1.86799 * 120.00152 * 13.18767 * 13 11 10 16 16 H 1.48499 * 109.47122 * 84.44684 * 15 13 11 17 17 H 1.48504 * 109.47263 * 204.44109 * 15 13 11 18 18 H 1.48497 * 109.47188 * 324.44478 * 15 13 11 19 19 C 1.46496 * 120.00064 * 186.33338 * 10 8 7 20 20 C 1.54270 * 110.03669 * 238.66080 * 19 10 8 21 21 C 1.54966 * 104.16173 * 217.14011 * 20 19 10 22 22 C 1.54885 * 102.77520 * 37.88680 * 21 20 19 23 23 C 1.53880 * 110.03159 * 121.44328 * 19 10 8 24 24 C 1.53004 * 109.47141 * 299.99508 * 8 7 6 25 25 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46899 * 299.99899 * 1 2 3 27 27 H 1.08995 * 109.47058 * 60.00104 * 1 2 3 28 28 H 1.08997 * 109.46950 * 299.99637 * 5 3 2 29 29 H 1.08997 * 109.46941 * 60.00009 * 5 3 2 30 30 H 1.08997 * 109.47202 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.47462 * 59.99974 * 6 5 3 32 32 H 1.08993 * 109.46843 * 299.99919 * 7 6 5 33 33 H 1.09006 * 109.46921 * 179.97438 * 7 6 5 34 34 H 0.96995 * 119.99617 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.01910 * 0.05742 * 19 10 8 36 36 H 1.09000 * 110.48281 * 335.78511 * 20 19 10 37 37 H 1.09006 * 110.48610 * 98.42464 * 20 19 10 38 38 H 1.08997 * 110.71580 * 279.56816 * 21 20 19 39 39 H 1.09001 * 110.91959 * 156.29478 * 21 20 19 40 40 H 1.09003 * 110.48117 * 203.40502 * 22 21 20 41 41 H 1.08995 * 110.60155 * 80.82346 * 22 21 20 42 42 H 1.08998 * 110.03138 * 238.57070 * 23 19 10 43 43 H 1.09002 * 110.02672 * 359.95405 * 23 19 10 44 44 H 1.09001 * 109.47539 * 300.01043 * 24 8 7 45 45 H 1.08991 * 109.47375 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8406 3.1688 1.4425 7 6 4.1894 3.1260 0.7214 8 6 3.9819 2.6602 -0.7211 9 1 4.9429 2.6293 -1.2347 10 7 3.0882 3.5931 -1.4118 11 6 2.6892 4.7462 -0.7903 12 1 1.6371 4.9572 -0.6675 13 6 3.6368 5.6438 -0.3180 14 7 3.2773 6.6113 0.4988 15 14 5.4223 5.4786 -0.8415 16 1 5.6202 6.1580 -2.1471 17 1 6.2980 6.1061 0.1806 18 1 5.7682 4.0406 -0.9743 19 6 2.6215 3.2925 -2.7675 20 6 3.0415 4.4199 -3.7332 21 6 1.8425 4.5519 -4.7061 22 6 0.6222 4.3350 -3.7773 23 6 1.0840 3.2381 -2.7958 24 6 3.3591 1.2627 -0.7211 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2569 1.8014 1.9563 29 1 2.8830 1.0774 1.9563 30 1 2.9880 3.5009 2.4702 31 1 2.1757 3.8631 0.9286 32 1 4.8542 2.4319 1.2354 33 1 4.6329 4.1218 0.7210 34 1 3.9395 7.2387 0.8285 35 1 3.0349 2.3410 -3.1021 36 1 3.1947 5.3514 -3.1884 37 1 3.9450 4.1409 -4.2755 38 1 1.8840 3.7814 -5.4759 39 1 1.8139 5.5443 -5.1562 40 1 -0.2390 3.9945 -4.3522 41 1 0.3820 5.2520 -3.2392 42 1 0.7513 2.2606 -3.1448 43 1 0.6851 3.4346 -1.8006 44 1 4.0239 0.5685 -0.2071 45 1 3.2116 0.9306 -1.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:46 Heat of formation + Delta-G solvation = -42.629119 kcal Electronic energy + Delta-G solvation = -23297.463624 eV Core-core repulsion = 20314.744501 eV Total energy + Delta-G solvation = -2982.719122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88735 -38.83168 -37.57198 -34.61381 -33.45713 -31.11443 -30.44677 -29.33846 -28.11690 -27.16897 -25.26872 -23.37147 -22.55524 -21.30913 -20.78450 -20.28191 -18.37106 -17.48681 -17.05462 -16.71120 -16.41972 -15.89204 -15.69634 -15.52104 -14.88794 -14.74036 -14.51094 -14.12931 -13.95821 -13.56325 -13.37478 -13.16636 -12.87807 -12.78230 -12.35196 -12.29327 -12.06803 -11.91978 -11.80975 -11.71787 -11.53017 -11.42452 -11.31231 -11.25198 -11.22504 -11.07961 -10.84844 -10.29472 -10.18751 -8.19285 -8.01272 -5.61286 1.38866 1.47789 1.52221 2.50905 2.93824 3.20798 3.39715 3.96559 3.99562 4.01476 4.07697 4.28371 4.37110 4.47597 4.53260 4.62247 4.63423 4.67483 4.69782 4.78930 4.79651 4.85300 4.87749 4.89515 4.96951 4.97648 4.99625 5.03990 5.16605 5.21353 5.23954 5.27551 5.35180 5.47239 5.53623 5.55368 5.58987 5.70151 5.72711 6.02501 6.14349 6.43179 6.49873 7.28806 7.77395 8.31459 9.11573 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.011287 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.132201 B = 2480.090420 C = 3578.206834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.103 3.897 4 H 0.063 0.937 5 C -0.123 4.123 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.163 3.837 9 H 0.039 0.961 10 N -0.601 5.601 11 C -0.215 4.215 12 H 0.034 0.966 13 C 0.015 3.985 14 N -0.946 5.946 15 Si 0.904 3.096 16 H -0.306 1.306 17 H -0.318 1.318 18 H -0.223 1.223 19 C 0.166 3.834 20 C -0.139 4.139 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.113 4.113 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.256 0.744 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -11.510 -5.308 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.046 3.954 4 H 0.081 0.919 5 C -0.161 4.161 6 C -0.147 4.147 7 C -0.148 4.148 8 C 0.058 3.942 9 H 0.057 0.943 10 N -0.325 5.325 11 C -0.345 4.345 12 H 0.052 0.948 13 C -0.182 4.182 14 N -0.589 5.589 15 Si 0.735 3.265 16 H -0.234 1.234 17 H -0.247 1.247 18 H -0.147 1.147 19 C 0.060 3.940 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.152 4.152 25 H 0.120 0.880 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.917 -11.574 -5.189 13.015 hybrid contribution 0.838 1.178 0.336 1.484 sum -2.079 -10.396 -4.853 11.660 Atomic orbital electron populations 1.22866 0.80497 1.03367 1.00013 1.87802 1.20638 1.28951 1.95203 1.21975 0.95187 0.83193 0.95081 0.91920 1.21885 1.00216 0.96839 0.97186 1.21523 0.97950 0.96849 0.98361 1.21652 0.97768 0.99631 0.95712 1.20818 0.92470 0.88740 0.92132 0.94318 1.44352 1.56207 1.20013 1.11914 1.17770 0.90657 0.95023 1.31086 0.94835 1.26239 1.00254 0.94696 0.97046 1.69914 1.34958 1.19246 1.34777 0.86852 0.83406 0.80473 0.75748 1.23419 1.24688 1.14669 1.21245 0.92997 0.95715 0.84043 1.22798 0.97731 1.00135 0.97186 1.22373 0.94220 1.01291 0.97054 1.22207 0.97871 0.98151 0.96976 1.22449 0.96947 0.98052 0.98678 1.21936 0.95630 0.97292 1.00361 0.87979 0.94423 0.94065 0.92868 0.92033 0.94816 0.89534 0.91958 0.93846 0.93518 0.91203 0.93754 0.92730 0.90000 0.92319 0.90651 0.94232 0.91613 0.93583 0.91177 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.82 113.37 1.23 1.93 16 2 O -0.41 -12.65 10.35 -148.98 -1.54 -14.19 16 3 C 0.10 3.46 2.45 30.60 0.08 3.53 16 4 H 0.06 2.31 5.30 -2.39 -0.01 2.30 16 5 C -0.12 -4.28 5.54 30.60 0.17 -4.11 16 6 C -0.11 -4.52 5.43 30.60 0.17 -4.35 16 7 C -0.11 -4.52 4.36 30.59 0.13 -4.39 16 8 C 0.16 6.31 2.06 44.99 0.09 6.40 16 9 H 0.04 1.54 6.24 -2.38 -0.01 1.52 16 10 N -0.60 -24.96 1.03 -650.26 -0.67 -25.63 16 11 C -0.22 -10.75 4.40 84.03 0.37 -10.38 16 12 H 0.03 1.95 7.21 -2.91 -0.02 1.93 16 13 C 0.01 0.79 3.99 84.86 0.34 1.13 16 14 N -0.95 -55.78 13.97 21.65 0.30 -55.48 16 15 Si 0.90 44.00 24.78 68.60 1.70 45.70 16 16 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 17 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 18 H -0.22 -9.73 4.20 99.48 0.42 -9.32 16 19 C 0.17 5.95 2.94 45.72 0.13 6.08 16 20 C -0.14 -5.05 6.42 31.70 0.20 -4.85 16 21 C -0.11 -3.27 6.91 31.91 0.22 -3.05 16 22 C -0.11 -3.52 6.83 31.67 0.22 -3.30 16 23 C -0.12 -4.04 5.49 31.32 0.17 -3.87 16 24 C -0.11 -3.74 4.85 30.60 0.15 -3.59 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 0.91 7.87 -2.39 -0.02 0.89 16 27 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.05 1.77 7.87 -2.39 -0.02 1.75 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 4.21 4.84 -2.38 -0.01 4.20 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.04 2.03 2.89 -2.38 -0.01 2.02 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.07 2.27 6.64 -2.39 -0.02 2.26 16 36 H 0.04 1.97 6.77 -2.39 -0.02 1.96 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.77 5.86 -2.39 -0.01 1.76 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.07 2.12 6.73 -2.39 -0.02 2.11 16 Total: -1.00 -58.11 315.20 4.12 -54.00 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.66 Total: 18.41 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.67 Total: -22.81 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -0.37 Total: -81.11 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.54 Total: -14.19 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.70 Total: 45.70 kcal Total: -58.11 4.12 -54.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.369 kcal (2) G-P(sol) polarization free energy of solvation -58.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds