Wall clock time and date at job start Mon Mar 30 2020 08:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00200 * 2 1 4 4 H 1.09000 * 109.47261 * 330.00645 * 3 2 1 5 5 C 1.53003 * 109.46642 * 90.00116 * 3 2 1 6 6 C 1.52992 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47456 * 300.00291 * 6 5 3 8 8 C 1.53003 * 109.47175 * 59.99721 * 7 6 5 9 9 H 1.09000 * 109.46861 * 60.00085 * 8 7 6 10 10 N 1.46501 * 109.47334 * 180.02562 * 8 7 6 11 11 C 1.36943 * 119.99392 * 54.27609 * 10 8 7 12 12 H 1.07994 * 119.99891 * 238.34081 * 11 10 8 13 13 C 1.38805 * 119.99949 * 58.35319 * 11 10 8 14 14 N 1.31623 * 120.00365 * 35.56230 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 215.55885 * 13 11 10 16 16 H 1.48502 * 109.46971 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47112 * 119.99852 * 15 13 11 18 18 H 1.48497 * 109.47499 * 240.00056 * 15 13 11 19 19 C 1.46497 * 120.00214 * 234.27689 * 10 8 7 20 20 C 1.54268 * 110.03419 * 236.00006 * 19 10 8 21 21 C 1.54963 * 104.15899 * 217.13726 * 20 19 10 22 22 C 1.54889 * 102.77948 * 37.89091 * 21 20 19 23 23 C 1.53878 * 110.02892 * 118.78256 * 19 10 8 24 24 C 1.52992 * 109.47366 * 209.99990 * 3 2 1 25 25 H 1.09001 * 109.46780 * 299.99742 * 1 2 3 26 26 H 1.09000 * 109.46615 * 59.99360 * 1 2 3 27 27 H 1.08993 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47256 * 300.00348 * 5 3 2 29 29 H 1.09006 * 109.46879 * 59.99851 * 5 3 2 30 30 H 1.09009 * 109.47689 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.47272 * 60.00184 * 6 5 3 32 32 H 1.09000 * 109.47156 * 299.99987 * 7 6 5 33 33 H 1.08999 * 109.47361 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00154 * 183.81424 * 14 13 11 35 35 H 1.09003 * 110.01636 * 357.39520 * 19 10 8 36 36 H 1.09000 * 110.48125 * 335.78305 * 20 19 10 37 37 H 1.09000 * 110.48173 * 98.42416 * 20 19 10 38 38 H 1.08997 * 110.71724 * 279.57269 * 21 20 19 39 39 H 1.09001 * 110.91734 * 156.29684 * 21 20 19 40 40 H 1.08993 * 110.48260 * 203.40565 * 22 21 20 41 41 H 1.08996 * 110.48943 * 80.75817 * 22 21 20 42 42 H 1.09002 * 110.03085 * 238.56600 * 23 19 10 43 43 H 1.08999 * 110.03497 * 359.95585 * 23 19 10 44 44 H 1.09000 * 109.47464 * 300.00530 * 24 3 2 45 45 H 1.09004 * 109.47284 * 60.00475 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5137 5 6 2.2178 1.7712 1.4426 6 6 2.8407 3.1686 1.4427 7 6 4.1894 3.1259 0.7216 8 6 3.9820 2.6601 -0.7209 9 1 3.3170 3.3543 -1.2348 10 7 5.2735 2.6186 -1.4113 11 6 6.3117 1.9018 -0.8787 12 1 7.2427 2.3949 -0.6415 13 6 6.1674 0.5414 -0.6439 14 7 5.4556 -0.1971 -1.4689 15 14 6.9834 -0.2416 0.8428 16 1 7.7204 0.7967 1.6070 17 1 5.9462 -0.8526 1.7123 18 1 7.9320 -1.2912 0.3914 19 6 5.4543 3.3439 -2.6712 20 6 5.9293 2.3762 -3.7746 21 6 6.9318 3.2141 -4.6079 22 6 7.6622 4.0489 -3.5268 23 6 6.5553 4.4073 -2.5138 24 6 3.3589 1.2632 -0.7212 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2569 1.8012 1.9564 29 1 2.8830 1.0771 1.9563 30 1 2.9889 3.5003 2.4704 31 1 2.1758 3.8629 0.9288 32 1 4.8543 2.4317 1.2355 33 1 4.6330 4.1215 0.7213 34 1 5.3086 -1.1361 -1.2754 35 1 4.5179 3.8170 -2.9671 36 1 6.4274 1.5118 -3.3354 37 1 5.0888 2.0601 -4.3925 38 1 6.4043 3.8635 -5.3065 39 1 7.6331 2.5687 -5.1368 40 1 8.0859 4.9526 -3.9646 41 1 8.4403 3.4550 -3.0474 42 1 6.1534 5.3963 -2.7342 43 1 6.9545 4.3843 -1.4998 44 1 4.0242 0.5693 -0.2075 45 1 3.2112 0.9314 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:55 Heat of formation + Delta-G solvation = -42.600941 kcal Electronic energy + Delta-G solvation = -22584.566340 eV Core-core repulsion = 19601.848439 eV Total energy + Delta-G solvation = -2982.717901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.76012 -37.42214 -35.85234 -33.42788 -31.21189 -29.39701 -28.47340 -27.63750 -26.21672 -26.00957 -23.55381 -21.53478 -20.85215 -19.71071 -19.23590 -18.65431 -16.55561 -15.50780 -15.28682 -14.89045 -14.64546 -14.48506 -14.26878 -13.73862 -13.37909 -13.23881 -12.60656 -12.43212 -12.23415 -12.02028 -11.78235 -11.26519 -11.23431 -10.98688 -10.88124 -10.52987 -10.46766 -10.31158 -10.25624 -10.17500 -10.07890 -9.99674 -9.73832 -9.64865 -9.59266 -9.50144 -9.32519 -8.78541 -7.79292 -6.39012 -5.62672 -3.48075 3.36587 3.49757 3.52715 4.28831 4.52719 5.16605 5.26270 5.39259 5.48180 5.56185 5.60920 5.62313 5.63841 5.70724 5.82644 5.85943 5.97935 6.08027 6.21525 6.25631 6.29915 6.31362 6.42485 6.49042 6.57313 6.61009 6.64551 6.67435 6.72956 6.73585 6.80104 6.87795 7.07324 7.11807 7.14012 7.23784 7.39870 7.52731 7.71896 7.79859 7.92203 8.03220 8.77799 9.31221 9.81632 10.60499 11.09137 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.007901 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.349280 B = 3543.202945 C = 4075.629509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.085 3.915 4 H 0.043 0.957 5 C -0.136 4.136 6 C -0.113 4.113 7 C -0.120 4.120 8 C 0.195 3.805 9 H 0.034 0.966 10 N -0.573 5.573 11 C -0.281 4.281 12 H 0.049 0.951 13 C 0.056 3.944 14 N -0.834 5.834 15 Si 0.852 3.148 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.290 1.290 19 C 0.171 3.829 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.117 4.117 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.255 0.745 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 5.416 0.632 7.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.027 3.973 4 H 0.061 0.939 5 C -0.174 4.174 6 C -0.151 4.151 7 C -0.159 4.159 8 C 0.088 3.912 9 H 0.053 0.947 10 N -0.293 5.293 11 C -0.410 4.410 12 H 0.066 0.934 13 C -0.150 4.150 14 N -0.470 5.470 15 Si 0.678 3.322 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.217 1.217 19 C 0.065 3.935 20 C -0.163 4.163 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.171 4.171 24 C -0.157 4.157 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.618 5.064 0.552 7.584 hybrid contribution -0.028 -0.438 0.856 0.962 sum -5.646 4.627 1.408 7.434 Atomic orbital electron populations 1.22672 0.82944 1.01719 0.99110 1.87997 1.18015 1.29136 1.94953 1.22500 0.96916 0.82863 0.95062 0.93914 1.21996 0.99907 0.97692 0.97786 1.21475 0.98082 0.95693 0.99882 1.21871 0.95046 1.01038 0.97984 1.20232 0.87183 0.92962 0.90798 0.94731 1.43844 1.08892 1.56714 1.19850 1.18355 0.95532 0.88061 1.39086 0.93380 1.25342 0.96494 0.96663 0.96487 1.70443 1.39573 1.05944 1.31059 0.87136 0.79659 0.79461 0.85898 1.19703 1.21010 1.21691 1.21094 0.94063 0.91037 0.87321 1.22755 0.97223 1.00329 0.95949 1.22468 0.98527 0.98265 0.97110 1.22211 0.98177 0.98158 0.96682 1.22572 0.97244 0.97726 0.99525 1.22423 0.91843 1.00748 1.00679 0.94914 0.94689 0.90509 0.93467 0.91511 0.92770 0.92978 0.91196 0.93011 0.93514 0.94392 0.88151 0.94267 0.93366 0.93135 0.93851 0.92002 0.94306 0.91285 0.88369 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 101.05 1.09 1.56 16 2 O -0.38 -7.46 10.35 -35.23 -0.36 -7.82 16 3 C 0.08 1.61 2.61 -26.73 -0.07 1.54 16 4 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 5 C -0.14 -2.35 5.54 -26.73 -0.15 -2.50 16 6 C -0.11 -1.84 5.92 -26.74 -0.16 -2.00 16 7 C -0.12 -2.34 5.08 -26.73 -0.14 -2.47 16 8 C 0.20 4.14 2.64 -67.95 -0.18 3.96 16 9 H 0.03 0.70 7.59 -51.93 -0.39 0.31 16 10 N -0.57 -13.15 2.27 -156.91 -0.36 -13.51 16 11 C -0.28 -7.09 6.05 -15.06 -0.09 -7.19 16 12 H 0.05 1.29 7.50 -52.49 -0.39 0.89 16 13 C 0.06 1.45 3.50 -17.43 -0.06 1.38 16 14 N -0.83 -22.31 10.83 55.49 0.60 -21.71 16 15 Si 0.85 20.47 29.67 -169.99 -5.04 15.42 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 19 C 0.17 3.59 3.43 -66.81 -0.23 3.36 16 20 C -0.12 -2.61 6.41 -25.03 -0.16 -2.77 16 21 C -0.13 -2.22 6.91 -24.70 -0.17 -2.39 16 22 C -0.11 -2.01 6.83 -25.07 -0.17 -2.18 16 23 C -0.13 -2.48 6.29 -25.61 -0.16 -2.64 16 24 C -0.12 -2.62 3.55 -26.76 -0.09 -2.72 16 25 H 0.03 0.42 7.87 -51.93 -0.41 0.01 16 26 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.52 7.54 -51.93 -0.39 1.13 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 36 H 0.10 2.51 6.79 -51.93 -0.35 2.15 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.42 7.06 -51.93 -0.37 1.05 16 44 H 0.10 2.50 4.92 -51.93 -0.26 2.25 16 45 H 0.06 1.61 7.91 -51.93 -0.41 1.20 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -26.22 336.42 -9.22 -35.44 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.39 Total: 2.16 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.74 Total: -15.05 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.25 Total: -35.22 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.36 Total: -7.82 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.04 Total: 15.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.22 -9.22 -35.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.164 kcal (2) G-P(sol) polarization free energy of solvation -26.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds