Wall clock time and date at job start Mon Mar 30 2020 08:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00200 * 2 1 4 4 H 1.09000 * 109.47261 * 330.00645 * 3 2 1 5 5 C 1.53003 * 109.46642 * 90.00116 * 3 2 1 6 6 C 1.52992 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47456 * 300.00291 * 6 5 3 8 8 C 1.53003 * 109.47175 * 59.99721 * 7 6 5 9 9 H 1.09000 * 109.46861 * 60.00085 * 8 7 6 10 10 N 1.46501 * 109.47334 * 180.02562 * 8 7 6 11 11 C 1.36943 * 119.99392 * 54.27609 * 10 8 7 12 12 H 1.07994 * 119.99891 * 238.34081 * 11 10 8 13 13 C 1.38805 * 119.99949 * 58.35319 * 11 10 8 14 14 N 1.31623 * 120.00365 * 35.56230 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 215.55885 * 13 11 10 16 16 H 1.48502 * 109.46971 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47112 * 119.99852 * 15 13 11 18 18 H 1.48497 * 109.47499 * 240.00056 * 15 13 11 19 19 C 1.46497 * 120.00214 * 234.27689 * 10 8 7 20 20 C 1.54268 * 110.03419 * 236.00006 * 19 10 8 21 21 C 1.54963 * 104.15899 * 217.13726 * 20 19 10 22 22 C 1.54889 * 102.77948 * 37.89091 * 21 20 19 23 23 C 1.53878 * 110.02892 * 118.78256 * 19 10 8 24 24 C 1.52992 * 109.47366 * 209.99990 * 3 2 1 25 25 H 1.09001 * 109.46780 * 299.99742 * 1 2 3 26 26 H 1.09000 * 109.46615 * 59.99360 * 1 2 3 27 27 H 1.08993 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47256 * 300.00348 * 5 3 2 29 29 H 1.09006 * 109.46879 * 59.99851 * 5 3 2 30 30 H 1.09009 * 109.47689 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.47272 * 60.00184 * 6 5 3 32 32 H 1.09000 * 109.47156 * 299.99987 * 7 6 5 33 33 H 1.08999 * 109.47361 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00154 * 183.81424 * 14 13 11 35 35 H 1.09003 * 110.01636 * 357.39520 * 19 10 8 36 36 H 1.09000 * 110.48125 * 335.78305 * 20 19 10 37 37 H 1.09000 * 110.48173 * 98.42416 * 20 19 10 38 38 H 1.08997 * 110.71724 * 279.57269 * 21 20 19 39 39 H 1.09001 * 110.91734 * 156.29684 * 21 20 19 40 40 H 1.08993 * 110.48260 * 203.40565 * 22 21 20 41 41 H 1.08996 * 110.48943 * 80.75817 * 22 21 20 42 42 H 1.09002 * 110.03085 * 238.56600 * 23 19 10 43 43 H 1.08999 * 110.03497 * 359.95585 * 23 19 10 44 44 H 1.09000 * 109.47464 * 300.00530 * 24 3 2 45 45 H 1.09004 * 109.47284 * 60.00475 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5137 5 6 2.2178 1.7712 1.4426 6 6 2.8407 3.1686 1.4427 7 6 4.1894 3.1259 0.7216 8 6 3.9820 2.6601 -0.7209 9 1 3.3170 3.3543 -1.2348 10 7 5.2735 2.6186 -1.4113 11 6 6.3117 1.9018 -0.8787 12 1 7.2427 2.3949 -0.6415 13 6 6.1674 0.5414 -0.6439 14 7 5.4556 -0.1971 -1.4689 15 14 6.9834 -0.2416 0.8428 16 1 7.7204 0.7967 1.6070 17 1 5.9462 -0.8526 1.7123 18 1 7.9320 -1.2912 0.3914 19 6 5.4543 3.3439 -2.6712 20 6 5.9293 2.3762 -3.7746 21 6 6.9318 3.2141 -4.6079 22 6 7.6622 4.0489 -3.5268 23 6 6.5553 4.4073 -2.5138 24 6 3.3589 1.2632 -0.7212 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2569 1.8012 1.9564 29 1 2.8830 1.0771 1.9563 30 1 2.9889 3.5003 2.4704 31 1 2.1758 3.8629 0.9288 32 1 4.8543 2.4317 1.2355 33 1 4.6330 4.1215 0.7213 34 1 5.3086 -1.1361 -1.2754 35 1 4.5179 3.8170 -2.9671 36 1 6.4274 1.5118 -3.3354 37 1 5.0888 2.0601 -4.3925 38 1 6.4043 3.8635 -5.3065 39 1 7.6331 2.5687 -5.1368 40 1 8.0859 4.9526 -3.9646 41 1 8.4403 3.4550 -3.0474 42 1 6.1534 5.3963 -2.7342 43 1 6.9545 4.3843 -1.4998 44 1 4.0242 0.5693 -0.2075 45 1 3.2112 0.9314 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:54 Heat of formation + Delta-G solvation = -55.372534 kcal Electronic energy + Delta-G solvation = -22585.120158 eV Core-core repulsion = 19601.848439 eV Total energy + Delta-G solvation = -2983.271718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32002 -38.98169 -37.35052 -35.12717 -33.07257 -30.93731 -30.01105 -29.20677 -27.98414 -27.24370 -25.35005 -23.04535 -22.41707 -21.22273 -20.93995 -20.25438 -18.25852 -17.15311 -16.90718 -16.47761 -16.21140 -16.05872 -15.88642 -15.15877 -15.00873 -14.71168 -14.22201 -13.95876 -13.90063 -13.60449 -13.22544 -13.11673 -12.89038 -12.63941 -12.50777 -12.23727 -12.07636 -11.92250 -11.84955 -11.73788 -11.67050 -11.62544 -11.30039 -11.21517 -11.17949 -11.14312 -10.97539 -10.24911 -9.77353 -8.35960 -7.52828 -5.48625 1.37606 1.48217 1.53592 2.53441 2.95725 3.18951 3.63811 3.98020 4.05982 4.09992 4.11593 4.28633 4.34169 4.46045 4.49235 4.56895 4.58478 4.66448 4.75281 4.79318 4.83539 4.89012 4.89709 4.94824 5.02079 5.07954 5.09499 5.17864 5.23744 5.27452 5.32795 5.35477 5.42886 5.52821 5.57233 5.65266 5.76881 5.82408 5.87135 5.98622 6.07301 6.48977 6.72210 7.39747 7.96017 8.65952 9.07142 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.007901 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.349280 B = 3543.202945 C = 4075.629509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.088 3.912 4 H 0.062 0.938 5 C -0.130 4.130 6 C -0.105 4.105 7 C -0.113 4.113 8 C 0.191 3.809 9 H 0.050 0.950 10 N -0.585 5.585 11 C -0.269 4.269 12 H 0.032 0.968 13 C 0.027 3.973 14 N -0.856 5.856 15 Si 0.893 3.107 16 H -0.268 1.268 17 H -0.293 1.293 18 H -0.295 1.295 19 C 0.162 3.838 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.246 0.754 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 7.727 0.838 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.168 4.168 6 C -0.143 4.143 7 C -0.152 4.152 8 C 0.084 3.916 9 H 0.068 0.932 10 N -0.305 5.305 11 C -0.399 4.399 12 H 0.049 0.951 13 C -0.176 4.176 14 N -0.493 5.493 15 Si 0.720 3.280 16 H -0.193 1.193 17 H -0.219 1.219 18 H -0.222 1.222 19 C 0.056 3.944 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.163 4.163 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.885 7.388 0.765 10.128 hybrid contribution 0.322 -1.166 0.740 1.418 sum -6.563 6.223 1.505 9.168 Atomic orbital electron populations 1.22924 0.80226 1.03299 1.00572 1.87946 1.21078 1.29526 1.95224 1.22384 0.95247 0.83374 0.96001 0.91978 1.21944 1.00926 0.97571 0.96382 1.21441 0.96205 0.95578 1.01046 1.21752 0.96675 1.00205 0.96579 1.20359 0.86497 0.92645 0.92096 0.93219 1.44039 1.09007 1.56631 1.20825 1.18218 0.95564 0.87887 1.38214 0.95098 1.25668 0.97217 0.97056 0.97703 1.70527 1.41365 1.05498 1.31945 0.86491 0.78571 0.78694 0.84214 1.19261 1.21926 1.22247 1.21293 0.95365 0.91375 0.86386 1.22625 0.97543 0.99453 0.96573 1.22412 0.97760 0.98076 0.97072 1.22183 0.97274 0.99175 0.96166 1.22458 0.96826 0.98206 0.98783 1.22140 0.93644 1.00437 0.98231 0.92858 0.93653 0.89065 0.90455 0.94089 0.90511 0.90542 0.94358 0.92385 0.94410 0.93399 0.92548 0.95089 0.90758 0.92591 0.90573 0.93877 0.91650 0.93411 0.91937 0.95618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.82 113.37 1.23 1.92 16 2 O -0.42 -16.12 10.35 -148.98 -1.54 -17.66 16 3 C 0.09 3.25 2.61 30.59 0.08 3.33 16 4 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16 5 C -0.13 -4.24 5.54 30.59 0.17 -4.07 16 6 C -0.10 -3.10 5.92 30.59 0.18 -2.92 16 7 C -0.11 -4.28 5.08 30.59 0.16 -4.13 16 8 C 0.19 8.05 2.64 44.98 0.12 8.17 16 9 H 0.05 1.94 7.59 -2.39 -0.02 1.92 16 10 N -0.58 -27.24 2.27 -650.35 -1.47 -28.72 16 11 C -0.27 -14.00 6.05 84.03 0.51 -13.49 16 12 H 0.03 1.72 7.50 -2.91 -0.02 1.70 16 13 C 0.03 1.46 3.50 84.86 0.30 1.76 16 14 N -0.86 -48.21 10.83 21.65 0.23 -47.98 16 15 Si 0.89 43.74 29.67 68.60 2.04 45.77 16 16 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 18 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 19 C 0.16 6.71 3.43 45.72 0.16 6.87 16 20 C -0.12 -5.24 6.41 31.70 0.20 -5.04 16 21 C -0.12 -3.88 6.91 31.91 0.22 -3.66 16 22 C -0.11 -3.65 6.83 31.67 0.22 -3.43 16 23 C -0.12 -4.46 6.29 31.32 0.20 -4.26 16 24 C -0.10 -4.79 3.55 30.57 0.11 -4.68 16 25 H 0.05 1.20 7.87 -2.39 -0.02 1.18 16 26 H 0.04 1.10 8.08 -2.39 -0.02 1.08 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 29 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 32 H 0.04 1.68 7.54 -2.39 -0.02 1.66 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 35 H 0.05 1.87 7.60 -2.39 -0.02 1.86 16 36 H 0.06 2.92 6.79 -2.39 -0.02 2.90 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.93 7.06 -2.39 -0.02 1.91 16 44 H 0.06 3.32 4.92 -2.39 -0.01 3.31 16 45 H 0.02 1.32 7.91 -2.38 -0.02 1.30 16 Total: -1.00 -59.82 336.42 4.02 -55.81 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.92 Total: 16.41 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.84 Total: -23.64 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.24 Total: -76.69 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.54 Total: -17.66 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.04 Total: 45.77 kcal Total: -59.82 4.02 -55.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.433 kcal (2) G-P(sol) polarization free energy of solvation -59.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds