Wall clock time and date at job start Mon Mar 30 2020 08:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 C 1.53002 * 109.46804 * 295.00065 * 3 2 1 5 5 C 1.53001 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46916 * 60.00065 * 5 4 3 7 7 N 1.46900 * 109.46973 * 179.97438 * 6 5 4 8 8 C 1.46899 * 111.00067 * 188.14124 * 7 6 5 9 9 C 1.50699 * 109.47388 * 195.59014 * 8 7 6 10 10 H 1.07997 * 119.99563 * 356.35999 * 9 8 7 11 11 C 1.37873 * 120.00185 * 176.36285 * 9 8 7 12 12 N 1.31513 * 120.00066 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47315 * 90.00087 * 13 11 9 15 15 H 1.48498 * 109.47043 * 209.99941 * 13 11 9 16 16 H 1.48500 * 109.47352 * 329.99856 * 13 11 9 17 17 C 1.46905 * 110.99989 * 312.10031 * 7 6 5 18 18 C 1.52998 * 109.47444 * 88.44760 * 17 7 6 19 19 C 1.52994 * 109.47070 * 65.30542 * 18 17 7 20 20 C 1.53002 * 109.47089 * 185.30549 * 18 17 7 21 21 C 1.52995 * 109.46728 * 299.99866 * 6 5 4 22 22 C 1.52992 * 109.47268 * 175.00248 * 3 2 1 23 23 H 1.08996 * 109.47169 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47090 * 300.00549 * 1 2 3 25 25 H 1.09005 * 109.47477 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46754 * 120.00216 * 2 1 3 27 27 H 1.08994 * 109.46785 * 239.99279 * 2 1 3 28 28 H 1.09004 * 109.47167 * 54.99376 * 3 2 1 29 29 H 1.09000 * 109.47185 * 300.00155 * 4 3 2 30 30 H 1.09002 * 109.47406 * 59.99923 * 4 3 2 31 31 H 1.09000 * 109.47334 * 300.00203 * 5 4 3 32 32 H 1.09000 * 109.47109 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47007 * 59.99937 * 6 5 4 34 34 H 1.09002 * 109.47149 * 315.59104 * 8 7 6 35 35 H 1.09001 * 109.46986 * 75.59095 * 8 7 6 36 36 H 0.97003 * 120.00090 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.46421 * 208.44915 * 17 7 6 38 38 H 1.09004 * 109.46910 * 328.44006 * 17 7 6 39 39 H 1.08998 * 109.46949 * 305.30657 * 18 17 7 40 40 H 1.09002 * 109.47135 * 184.26067 * 19 18 17 41 41 H 1.09004 * 109.47295 * 304.25627 * 19 18 17 42 42 H 1.09003 * 109.47175 * 64.25921 * 19 18 17 43 43 H 1.08997 * 109.46864 * 59.99838 * 20 18 17 44 44 H 1.09001 * 109.47057 * 179.97438 * 20 18 17 45 45 H 1.09003 * 109.46670 * 300.00150 * 20 18 17 46 46 H 1.09000 * 109.47434 * 299.99809 * 21 6 5 47 47 H 1.09002 * 109.46959 * 180.02562 * 21 6 5 48 48 H 1.08998 * 109.47282 * 299.99361 * 22 3 2 49 49 H 1.09004 * 109.47451 * 59.99944 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1264 -1.3074 5 6 2.1448 3.5691 -1.3072 6 6 3.6696 3.5714 -1.1812 7 7 4.1589 4.9566 -1.1816 8 6 5.6254 4.9969 -1.2566 9 6 6.1104 6.3716 -0.8745 10 1 5.3986 7.1550 -0.6603 11 6 7.4627 6.6291 -0.7986 12 7 7.8859 7.8290 -0.4657 13 14 8.6938 5.2742 -1.1700 14 1 9.0246 5.2890 -2.6175 15 1 9.9297 5.4975 -0.3775 16 1 8.1059 3.9589 -0.8100 17 6 3.5543 5.7281 -2.2759 18 6 2.2398 6.3477 -1.7975 19 6 2.5292 7.3733 -0.6997 20 6 1.5451 7.0399 -2.9719 21 6 4.0743 2.8874 0.1261 22 6 3.5648 1.4442 0.1257 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.6054 1.9815 0.8418 29 1 2.0698 1.5873 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.7099 4.1080 -0.4654 32 1 1.8568 4.0563 -2.2388 33 1 4.1045 3.0326 -2.0230 34 1 6.0446 4.2602 -0.5712 35 1 5.9436 4.7690 -2.2739 36 1 8.8374 8.0103 -0.4126 37 1 4.2382 6.5191 -2.5835 38 1 3.3587 5.0680 -3.1210 39 1 1.5920 5.5653 -1.4022 40 1 1.5888 7.7595 -0.3063 41 1 3.0908 6.8968 0.1038 42 1 3.1140 8.1943 -1.1146 43 1 1.3390 6.3092 -3.7540 44 1 0.6084 7.4810 -2.6312 45 1 2.1930 7.8223 -3.3673 46 1 3.6394 3.4263 0.9679 47 1 5.1606 2.8894 0.2161 48 1 3.8532 0.9570 1.0570 49 1 3.9994 0.9052 -0.7162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085070199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:58:00 Heat of formation + Delta-G solvation = -31.251420 kcal Electronic energy + Delta-G solvation = -22236.536328 eV Core-core repulsion = 19390.143674 eV Total energy + Delta-G solvation = -2846.392654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.40512 -36.92788 -34.27034 -33.03817 -31.84489 -30.64364 -28.47684 -27.20669 -26.52351 -24.69256 -23.41376 -21.81649 -21.12816 -20.03597 -19.39678 -19.14314 -16.78975 -15.49713 -15.05579 -14.69625 -14.48081 -14.21107 -13.77146 -13.72899 -13.52057 -13.22570 -13.04579 -12.82185 -12.39886 -12.25806 -11.95018 -11.87298 -11.69252 -11.56829 -11.46591 -11.04450 -10.92378 -10.90683 -10.81911 -10.60995 -10.52361 -10.37056 -10.26603 -10.10752 -9.98488 -9.69042 -9.50748 -9.41892 -9.11914 -8.52153 -7.24749 -5.99982 -3.95634 3.30219 3.38114 3.39876 4.45911 4.59754 4.78077 4.83406 4.96644 5.18126 5.25989 5.32660 5.41376 5.49109 5.50578 5.58416 5.61500 5.65476 5.71742 5.77304 5.81924 5.85913 5.90268 5.97282 6.01267 6.03757 6.11575 6.17317 6.25528 6.26467 6.29485 6.38645 6.42275 6.48358 6.50488 6.53919 6.60583 6.69311 6.71732 6.80746 6.94721 7.02490 7.04091 7.21922 7.71661 8.04783 8.18122 8.74301 9.12149 9.62901 11.13236 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006132 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.770054 B = 4565.131951 C = 5868.835393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.086 3.914 7 N -0.519 5.519 8 C 0.159 3.841 9 C -0.502 4.502 10 H 0.085 0.915 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.871 3.129 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.066 3.934 18 C -0.102 4.102 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.112 4.112 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.031 0.969 35 H -0.021 1.021 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.020 0.980 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 -12.158 -1.413 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.105 4.105 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.022 4.022 7 N -0.243 5.243 8 C 0.033 3.967 9 C -0.540 4.540 10 H 0.103 0.897 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.698 3.302 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.192 1.192 17 C -0.062 4.062 18 C -0.121 4.121 19 C -0.191 4.191 20 C -0.204 4.204 21 C -0.148 4.148 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.049 0.951 35 H -0.003 1.003 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.937 -11.828 -0.940 18.304 hybrid contribution 1.172 -0.999 -1.016 1.845 sum -12.766 -12.827 -1.956 18.202 Atomic orbital electron populations 1.21820 0.96197 1.01089 1.01922 1.21577 0.95626 0.96905 1.01612 1.21195 0.95818 0.95168 0.98329 1.21649 1.00071 0.96225 0.97159 1.21952 0.95686 0.95634 1.02159 1.21589 0.94073 0.90381 0.96200 1.61935 1.08745 1.08993 1.44596 1.20261 0.83375 0.98774 0.94329 1.21106 0.92325 0.95235 1.45343 0.89748 1.24883 0.98183 0.95131 0.95143 1.69893 1.14697 1.20393 1.49182 0.86935 0.81401 0.83338 0.78476 1.20522 1.21288 1.19245 1.22058 0.95803 0.97235 0.91089 1.21491 0.96666 0.98299 0.95604 1.21676 0.99583 0.98455 0.99343 1.21835 0.99949 1.00291 0.98311 1.21577 1.01121 0.93992 0.98116 1.21594 0.94837 0.97371 1.01198 0.92504 0.92849 0.93265 0.92305 0.92307 0.91202 0.92562 0.92155 0.90972 0.91546 0.95650 0.95104 1.00333 0.92827 0.90141 0.96227 0.90445 0.94937 0.90755 0.93266 0.93656 0.93322 0.92863 0.91242 0.91693 0.92318 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.15 5.40 -26.73 -0.14 -1.29 16 3 C -0.09 -0.98 2.19 -90.62 -0.20 -1.17 16 4 C -0.11 -1.31 4.96 -26.73 -0.13 -1.45 16 5 C -0.12 -1.63 3.54 -26.73 -0.09 -1.72 16 6 C 0.09 1.46 1.81 -67.71 -0.12 1.34 16 7 N -0.52 -10.48 3.63 -228.08 -0.83 -11.31 16 8 C 0.16 3.81 3.61 -4.98 -0.02 3.79 16 9 C -0.50 -14.04 8.89 -34.44 -0.31 -14.34 16 10 H 0.08 2.55 7.89 -52.49 -0.41 2.14 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 13 Si 0.87 21.64 27.54 -169.99 -4.68 16.95 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.40 6.44 56.52 0.36 -6.04 16 17 C 0.07 1.25 3.76 -3.82 -0.01 1.23 16 18 C -0.10 -1.63 2.45 -90.62 -0.22 -1.86 16 19 C -0.13 -2.35 9.03 37.15 0.34 -2.01 16 20 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 21 C -0.11 -1.77 5.21 -26.71 -0.14 -1.91 16 22 C -0.11 -1.43 5.21 -26.71 -0.14 -1.57 16 23 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 31 H 0.07 1.04 7.06 -51.93 -0.37 0.68 16 32 H 0.07 0.93 5.51 -51.93 -0.29 0.64 16 33 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.03 0.76 4.87 -51.93 -0.25 0.50 16 35 H -0.02 -0.52 7.67 -51.93 -0.40 -0.91 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.75 7.01 -51.93 -0.36 1.38 16 38 H 0.02 0.35 7.12 -51.93 -0.37 -0.02 16 39 H 0.08 1.17 4.28 -51.93 -0.22 0.95 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.49 7.65 -51.93 -0.40 1.10 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.17 6.37 -51.93 -0.33 0.84 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -28.82 355.13 -9.57 -38.39 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -9.60 Total: -0.82 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -0.59 Total: -21.74 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.05 Total: -38.14 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.68 Total: 16.95 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.82 -9.57 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085070199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.144 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds