Wall clock time and date at job start Mon Mar 30 2020 08:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 C 1.53002 * 109.46804 * 295.00065 * 3 2 1 5 5 C 1.53001 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46916 * 60.00065 * 5 4 3 7 7 N 1.46900 * 109.46973 * 179.97438 * 6 5 4 8 8 C 1.46899 * 111.00067 * 188.14124 * 7 6 5 9 9 C 1.50699 * 109.47388 * 195.59014 * 8 7 6 10 10 H 1.07997 * 119.99563 * 356.35999 * 9 8 7 11 11 C 1.37873 * 120.00185 * 176.36285 * 9 8 7 12 12 N 1.31513 * 120.00066 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47315 * 90.00087 * 13 11 9 15 15 H 1.48498 * 109.47043 * 209.99941 * 13 11 9 16 16 H 1.48500 * 109.47352 * 329.99856 * 13 11 9 17 17 C 1.46905 * 110.99989 * 312.10031 * 7 6 5 18 18 C 1.52998 * 109.47444 * 88.44760 * 17 7 6 19 19 C 1.52994 * 109.47070 * 65.30542 * 18 17 7 20 20 C 1.53002 * 109.47089 * 185.30549 * 18 17 7 21 21 C 1.52995 * 109.46728 * 299.99866 * 6 5 4 22 22 C 1.52992 * 109.47268 * 175.00248 * 3 2 1 23 23 H 1.08996 * 109.47169 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47090 * 300.00549 * 1 2 3 25 25 H 1.09005 * 109.47477 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46754 * 120.00216 * 2 1 3 27 27 H 1.08994 * 109.46785 * 239.99279 * 2 1 3 28 28 H 1.09004 * 109.47167 * 54.99376 * 3 2 1 29 29 H 1.09000 * 109.47185 * 300.00155 * 4 3 2 30 30 H 1.09002 * 109.47406 * 59.99923 * 4 3 2 31 31 H 1.09000 * 109.47334 * 300.00203 * 5 4 3 32 32 H 1.09000 * 109.47109 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47007 * 59.99937 * 6 5 4 34 34 H 1.09002 * 109.47149 * 315.59104 * 8 7 6 35 35 H 1.09001 * 109.46986 * 75.59095 * 8 7 6 36 36 H 0.97003 * 120.00090 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.46421 * 208.44915 * 17 7 6 38 38 H 1.09004 * 109.46910 * 328.44006 * 17 7 6 39 39 H 1.08998 * 109.46949 * 305.30657 * 18 17 7 40 40 H 1.09002 * 109.47135 * 184.26067 * 19 18 17 41 41 H 1.09004 * 109.47295 * 304.25627 * 19 18 17 42 42 H 1.09003 * 109.47175 * 64.25921 * 19 18 17 43 43 H 1.08997 * 109.46864 * 59.99838 * 20 18 17 44 44 H 1.09001 * 109.47057 * 179.97438 * 20 18 17 45 45 H 1.09003 * 109.46670 * 300.00150 * 20 18 17 46 46 H 1.09000 * 109.47434 * 299.99809 * 21 6 5 47 47 H 1.09002 * 109.46959 * 180.02562 * 21 6 5 48 48 H 1.08998 * 109.47282 * 299.99361 * 22 3 2 49 49 H 1.09004 * 109.47451 * 59.99944 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1264 -1.3074 5 6 2.1448 3.5691 -1.3072 6 6 3.6696 3.5714 -1.1812 7 7 4.1589 4.9566 -1.1816 8 6 5.6254 4.9969 -1.2566 9 6 6.1104 6.3716 -0.8745 10 1 5.3986 7.1550 -0.6603 11 6 7.4627 6.6291 -0.7986 12 7 7.8859 7.8290 -0.4657 13 14 8.6938 5.2742 -1.1700 14 1 9.0246 5.2890 -2.6175 15 1 9.9297 5.4975 -0.3775 16 1 8.1059 3.9589 -0.8100 17 6 3.5543 5.7281 -2.2759 18 6 2.2398 6.3477 -1.7975 19 6 2.5292 7.3733 -0.6997 20 6 1.5451 7.0399 -2.9719 21 6 4.0743 2.8874 0.1261 22 6 3.5648 1.4442 0.1257 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.6054 1.9815 0.8418 29 1 2.0698 1.5873 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.7099 4.1080 -0.4654 32 1 1.8568 4.0563 -2.2388 33 1 4.1045 3.0326 -2.0230 34 1 6.0446 4.2602 -0.5712 35 1 5.9436 4.7690 -2.2739 36 1 8.8374 8.0103 -0.4126 37 1 4.2382 6.5191 -2.5835 38 1 3.3587 5.0680 -3.1210 39 1 1.5920 5.5653 -1.4022 40 1 1.5888 7.7595 -0.3063 41 1 3.0908 6.8968 0.1038 42 1 3.1140 8.1943 -1.1146 43 1 1.3390 6.3092 -3.7540 44 1 0.6084 7.4810 -2.6312 45 1 2.1930 7.8223 -3.3673 46 1 3.6394 3.4263 0.9679 47 1 5.1606 2.8894 0.2161 48 1 3.8532 0.9570 1.0570 49 1 3.9994 0.9052 -0.7162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085070199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:57:59 Heat of formation + Delta-G solvation = -46.256549 kcal Electronic energy + Delta-G solvation = -22237.186999 eV Core-core repulsion = 19390.143674 eV Total energy + Delta-G solvation = -2847.043325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67912 -38.16687 -35.68279 -34.76694 -33.38257 -31.78915 -29.95173 -28.67550 -27.85541 -26.20539 -24.54773 -23.05669 -22.66078 -21.09599 -20.85335 -20.38640 -18.87759 -16.85198 -16.60408 -16.13724 -15.88122 -15.45524 -15.12852 -14.93445 -14.79477 -14.50129 -14.27903 -14.24130 -13.86987 -13.80820 -13.13836 -13.10023 -13.00444 -12.87351 -12.79089 -12.54994 -12.36212 -12.10304 -12.02160 -11.95072 -11.79032 -11.73553 -11.57550 -11.47230 -11.34534 -11.30961 -11.09871 -10.78983 -10.75768 -10.53853 -8.89025 -8.25300 -6.25935 1.31119 1.32854 1.43046 2.34197 3.05890 3.20072 3.79458 3.85066 3.97681 4.09365 4.20156 4.22042 4.31683 4.42054 4.49093 4.54383 4.59245 4.64175 4.66201 4.72153 4.77471 4.79524 4.86643 4.89658 4.92298 4.98799 5.04161 5.10233 5.11725 5.17188 5.18513 5.22765 5.25606 5.30442 5.33675 5.34846 5.36071 5.41111 5.48835 5.58304 5.62372 5.64602 5.69097 5.72118 6.12311 6.51833 6.77202 6.82269 7.36784 8.91254 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006132 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.770054 B = 4565.131951 C = 5868.835393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.107 4.107 5 C -0.109 4.109 6 C 0.084 3.916 7 N -0.530 5.530 8 C 0.170 3.830 9 C -0.503 4.503 10 H 0.046 0.954 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.938 3.062 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.253 1.253 17 C 0.070 3.930 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.108 4.108 22 C -0.105 4.105 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.020 0.980 34 H 0.030 0.970 35 H -0.026 1.026 36 H 0.264 0.736 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -14.851 -2.084 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.102 4.102 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.024 4.024 7 N -0.254 5.254 8 C 0.043 3.957 9 C -0.542 4.542 10 H 0.064 0.936 11 C -0.188 4.188 12 N -0.590 5.590 13 Si 0.763 3.237 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.177 1.177 17 C -0.059 4.059 18 C -0.113 4.113 19 C -0.184 4.184 20 C -0.199 4.199 21 C -0.146 4.146 22 C -0.143 4.143 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.048 0.952 35 H -0.009 1.009 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.924 -14.534 -1.615 21.620 hybrid contribution 1.735 -0.085 -0.774 1.902 sum -14.189 -14.620 -2.389 20.513 Atomic orbital electron populations 1.21811 0.95242 1.01819 1.02052 1.21528 0.96403 0.95396 1.01974 1.21164 0.94378 0.96516 0.98110 1.21621 1.01246 0.94229 0.97377 1.21875 0.92970 0.97673 1.02128 1.21736 0.96283 0.88072 0.96356 1.61899 1.06454 1.11556 1.45442 1.19977 0.86158 0.96032 0.93523 1.21326 0.91961 0.96338 1.44569 0.93559 1.25750 1.00384 0.97579 0.95093 1.70045 1.15276 1.22749 1.50941 0.85849 0.78658 0.80629 0.78610 1.19642 1.20725 1.17654 1.22044 0.96192 0.96249 0.91365 1.21468 0.95542 0.98255 0.96026 1.21592 0.99972 0.97933 0.98936 1.21789 1.00209 1.00242 0.97623 1.21547 0.99512 0.96263 0.97307 1.21551 0.96154 0.94766 1.01868 0.92242 0.92842 0.92318 0.91941 0.92024 0.91444 0.92274 0.90093 0.91326 0.91149 0.96181 0.95223 1.00877 0.92674 0.94122 0.94698 0.88543 0.92172 0.93947 0.95831 0.91856 0.91202 0.94161 0.92241 0.94235 0.91353 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 71.98 0.70 -1.38 16 2 C -0.12 -1.83 5.40 30.59 0.17 -1.67 16 3 C -0.08 -1.64 2.19 -10.80 -0.02 -1.66 16 4 C -0.11 -2.13 4.96 30.60 0.15 -1.98 16 5 C -0.11 -2.79 3.54 30.60 0.11 -2.68 16 6 C 0.08 2.76 1.81 44.92 0.08 2.84 16 7 N -0.53 -21.78 3.63 -875.51 -3.18 -24.96 16 8 C 0.17 8.37 3.61 85.56 0.31 8.68 16 9 C -0.50 -29.49 8.89 25.60 0.23 -29.27 16 10 H 0.05 3.00 7.89 -2.91 -0.02 2.97 16 11 C 0.01 0.52 5.47 84.65 0.46 0.98 16 12 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 13 Si 0.94 45.34 27.54 68.60 1.89 47.22 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.25 -11.49 6.44 99.48 0.64 -10.85 16 17 C 0.07 2.64 3.76 86.30 0.32 2.97 16 18 C -0.09 -2.95 2.45 -10.80 -0.03 -2.98 16 19 C -0.13 -4.58 9.03 71.98 0.65 -3.93 16 20 C -0.14 -3.62 9.19 71.98 0.66 -2.96 16 21 C -0.11 -3.43 5.21 30.61 0.16 -3.27 16 22 C -0.11 -2.49 5.21 30.61 0.16 -2.33 16 23 H 0.06 0.78 6.56 -2.39 -0.02 0.77 16 24 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.34 6.57 -2.39 -0.02 1.32 16 31 H 0.07 1.83 7.06 -2.39 -0.02 1.81 16 32 H 0.07 1.75 5.51 -2.39 -0.01 1.74 16 33 H 0.02 0.69 8.10 -2.39 -0.02 0.68 16 34 H 0.03 1.47 4.87 -2.39 -0.01 1.46 16 35 H -0.03 -1.31 7.67 -2.39 -0.02 -1.33 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.04 1.85 7.01 -2.39 -0.02 1.83 16 38 H 0.03 1.20 7.12 -2.39 -0.02 1.19 16 39 H 0.10 2.69 4.28 -2.39 -0.01 2.68 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.77 7.65 -2.38 -0.02 1.76 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.43 6.37 -2.39 -0.02 1.41 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -65.18 355.13 3.92 -61.26 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.80 Total: 15.10 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.11 Total: -38.63 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -2.88 Total: -84.95 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.89 Total: 47.22 kcal Total: -65.18 3.92 -61.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085070199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.008 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds