Wall clock time and date at job start Mon Mar 30 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20762 * 120.00349 * 2 1 4 4 C 1.50702 * 120.00286 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47527 * 185.16630 * 4 2 1 6 6 H 1.08994 * 109.00951 * 185.26645 * 5 4 2 7 7 C 1.54430 * 109.01876 * 66.43533 * 5 4 2 8 8 C 1.50760 * 109.02658 * 162.00304 * 7 5 4 9 9 C 1.54168 * 112.60848 * 93.01398 * 8 7 5 10 10 C 1.53817 * 111.97532 * 318.49027 * 9 8 7 11 11 C 1.50824 * 111.62000 * 319.04506 * 10 9 8 12 12 N 1.39779 * 109.02256 * 304.17435 * 5 4 2 13 13 C 1.46908 * 110.99715 * 309.71478 * 12 5 4 14 14 C 1.52992 * 109.47123 * 169.37844 * 13 12 5 15 15 C 1.53000 * 109.47291 * 185.77224 * 14 13 12 16 16 C 1.50704 * 109.47183 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99516 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99824 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46731 * 90.00495 * 20 18 16 22 22 H 1.48500 * 109.46877 * 209.99632 * 20 18 16 23 23 H 1.48501 * 109.47394 * 330.00080 * 20 18 16 24 24 H 1.08997 * 109.46679 * 239.99658 * 1 2 3 25 25 H 1.09003 * 109.47077 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47544 * 119.99299 * 1 2 3 27 27 H 1.08998 * 109.46774 * 65.16395 * 4 2 1 28 28 H 1.09002 * 109.46695 * 305.16843 * 4 2 1 29 29 H 1.09007 * 109.54299 * 281.86305 * 7 5 4 30 30 H 1.08995 * 109.55143 * 42.04276 * 7 5 4 31 31 H 1.08994 * 108.85351 * 213.82388 * 8 7 5 32 32 H 1.09001 * 108.85190 * 332.21012 * 8 7 5 33 33 H 1.09007 * 108.98501 * 79.13496 * 9 8 7 34 34 H 1.09003 * 108.98028 * 197.84534 * 9 8 7 35 35 H 1.08991 * 109.05214 * 79.59237 * 10 9 8 36 36 H 1.09000 * 109.05166 * 198.56780 * 10 9 8 37 37 H 1.09003 * 109.74582 * 335.41569 * 11 10 9 38 38 H 1.08997 * 109.74493 * 214.69308 * 11 10 9 39 39 H 1.08999 * 109.46693 * 49.38107 * 13 12 5 40 40 H 1.08998 * 109.46934 * 289.38043 * 13 12 5 41 41 H 1.09006 * 109.47364 * 65.77124 * 14 13 12 42 42 H 1.09005 * 109.47298 * 305.77474 * 14 13 12 43 43 H 1.09000 * 109.46730 * 299.99735 * 15 14 13 44 44 H 1.08998 * 109.47192 * 59.99952 * 15 14 13 45 45 H 0.97006 * 119.99637 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7597 -1.0285 0.1294 6 1 4.3036 -1.9682 0.0341 7 6 4.0411 -0.4250 1.5228 8 6 5.5109 -0.5609 1.8295 9 6 6.3198 0.6856 1.4187 10 6 5.8710 1.2396 0.0558 11 6 5.6000 0.1326 -0.9321 12 7 4.1549 -0.1672 -0.8981 13 6 3.6875 -0.6548 -2.2027 14 6 3.9024 0.4304 -3.2595 15 6 3.2863 -0.0200 -4.5856 16 6 3.4985 1.0487 -5.6268 17 1 4.0209 1.9579 -5.3686 18 6 3.0266 0.8651 -6.9092 19 7 3.2114 1.7980 -7.8176 20 14 2.1249 -0.7086 -7.3562 21 1 0.6707 -0.5320 -7.1125 22 1 2.3522 -1.0189 -8.7905 23 1 2.6348 -1.8256 -6.5211 24 1 -0.3632 -0.5139 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 2.0684 -1.8351 -0.9334 28 1 1.9296 -1.9160 0.8393 29 1 3.7639 0.6292 1.5262 30 1 3.4594 -0.9574 2.2752 31 1 5.6337 -0.7234 2.9002 32 1 5.9033 -1.4269 1.2965 33 1 6.1891 1.4586 2.1761 34 1 7.3757 0.4206 1.3635 35 1 4.9621 1.8255 0.1917 36 1 6.6543 1.8853 -0.3412 37 1 6.1670 -0.7559 -0.6543 38 1 5.8858 0.4545 -1.9334 39 1 2.6266 -0.8970 -2.1411 40 1 4.2486 -1.5474 -2.4792 41 1 4.9707 0.6000 -3.3942 42 1 3.4261 1.3549 -2.9330 43 1 3.7626 -0.9445 -4.9121 44 1 2.2180 -0.1895 -4.4509 45 1 2.8797 1.6687 -8.7200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093514331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:08 Heat of formation + Delta-G solvation = -39.798833 kcal Electronic energy + Delta-G solvation = -21845.863626 eV Core-core repulsion = 18863.267233 eV Total energy + Delta-G solvation = -2982.596392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.43573 -38.20429 -35.29117 -33.71176 -32.78652 -31.24074 -30.64872 -28.17099 -27.41886 -25.54256 -23.56191 -22.28560 -20.75963 -20.10229 -19.18160 -18.86006 -16.69459 -16.32408 -15.87627 -15.40797 -14.84208 -14.62363 -14.45164 -14.22798 -13.99031 -13.70477 -13.54138 -12.78273 -12.56668 -12.50771 -12.29503 -12.17913 -11.87353 -11.80970 -11.74132 -11.40704 -11.17301 -10.81930 -10.64915 -10.52955 -10.43178 -10.35808 -10.16496 -9.76562 -9.54108 -9.49853 -9.28083 -9.10752 -8.48967 -7.71211 -5.99228 -3.96291 2.30728 3.32332 3.39419 3.42979 4.07429 4.30958 4.48799 4.69959 4.73878 4.91668 5.11722 5.13203 5.22441 5.29578 5.34778 5.36592 5.44774 5.53766 5.57233 5.63939 5.69542 5.73497 5.79197 5.85416 5.86949 5.97393 6.02689 6.12714 6.18959 6.24473 6.28188 6.32633 6.51409 6.60682 6.69136 6.74288 7.01410 7.39372 7.46093 7.59369 7.78927 7.88309 7.89516 8.61375 9.07308 9.63588 11.14578 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.005283 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.034630 B = 5298.351236 C = 6056.224683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.345 3.655 3 O -0.411 6.411 4 C -0.178 4.178 5 C 0.120 3.880 6 H 0.023 0.977 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.115 4.115 10 C -0.119 4.119 11 C 0.066 3.934 12 N -0.536 5.536 13 C 0.053 3.947 14 C -0.097 4.097 15 C -0.012 4.012 16 C -0.515 4.515 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.267 1.267 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.012 0.988 44 H 0.008 0.992 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -8.190 20.872 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.217 3.783 3 O -0.281 6.281 4 C -0.216 4.216 5 C 0.009 3.991 6 H 0.040 0.960 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.061 4.061 12 N -0.260 5.260 13 C -0.073 4.073 14 C -0.135 4.135 15 C -0.050 4.050 16 C -0.553 4.553 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.030 0.970 44 H 0.026 0.974 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.381 -7.169 20.798 22.002 hybrid contribution -0.240 -1.763 -0.582 1.872 sum -0.621 -8.932 20.216 22.110 Atomic orbital electron populations 1.22344 0.95564 1.04624 1.03772 1.24191 0.90999 0.90476 0.72646 1.90454 1.71256 1.34165 1.32194 1.22556 0.96368 0.98475 1.04165 1.20229 0.93090 0.93174 0.92594 0.95974 1.21602 0.95699 1.03354 0.94809 1.21366 0.95695 0.98253 1.00169 1.21903 0.98709 0.97113 0.97543 1.21417 1.02073 0.98297 0.93874 1.21817 0.86612 0.97306 1.00357 1.58760 1.15069 1.48981 1.03155 1.22378 0.99506 0.97109 0.88351 1.21499 1.00556 0.97521 0.93879 1.19546 0.95233 0.97028 0.93200 1.21160 1.36678 1.03753 0.93753 0.91049 1.25041 0.95786 0.96319 0.96452 1.69925 1.47198 1.33805 1.03555 0.86778 0.80403 0.84653 0.77433 1.20353 1.21465 1.19127 0.89890 0.90269 0.89456 0.88311 0.89048 0.89467 0.92409 0.92805 0.92747 0.92616 0.92881 0.89876 0.92396 0.94973 0.89920 0.91425 0.95822 0.92933 0.91813 0.97016 0.97350 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.96 10.26 36.00 0.37 -1.59 16 2 C 0.35 4.31 6.20 -29.04 -0.18 4.13 16 3 O -0.41 -6.70 14.15 6.00 0.08 -6.62 16 4 C -0.18 -1.91 4.75 -27.88 -0.13 -2.04 16 5 C 0.12 1.49 1.64 -70.64 -0.12 1.38 16 6 H 0.02 0.28 7.54 -51.93 -0.39 -0.11 16 7 C -0.12 -1.32 4.49 -27.10 -0.12 -1.45 16 8 C -0.12 -1.23 5.31 -27.24 -0.14 -1.38 16 9 C -0.12 -1.26 5.91 -25.70 -0.15 -1.41 16 10 C -0.12 -1.56 5.41 -27.40 -0.15 -1.71 16 11 C 0.07 0.94 5.16 -4.52 -0.02 0.92 16 12 N -0.54 -8.02 2.20 -231.68 -0.51 -8.53 16 13 C 0.05 0.89 4.40 -3.82 -0.02 0.88 16 14 C -0.10 -2.02 4.93 -26.74 -0.13 -2.15 16 15 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 16 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 17 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 20 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.06 6.15 -51.93 -0.32 0.74 16 28 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 29 H 0.09 1.18 5.74 -51.93 -0.30 0.88 16 30 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.59 6.57 -51.93 -0.34 0.24 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.27 7.26 -51.93 -0.38 0.89 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.43 6.66 -51.93 -0.35 0.09 16 38 H 0.08 1.31 5.67 -51.93 -0.29 1.01 16 39 H 0.07 1.09 5.07 -51.93 -0.26 0.83 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.10 6.28 -51.93 -0.33 0.77 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 44 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -32.33 333.37 -8.58 -40.90 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.94 Total: -1.93 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.34 Total: -18.48 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.26 Total: -36.30 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.08 Total: -6.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.33 -8.58 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093514331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.106 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds