Wall clock time and date at job start Mon Mar 30 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20762 * 120.00349 * 2 1 4 4 C 1.50702 * 120.00286 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47527 * 185.16630 * 4 2 1 6 6 H 1.08994 * 109.00951 * 185.26645 * 5 4 2 7 7 C 1.54430 * 109.01876 * 66.43533 * 5 4 2 8 8 C 1.50760 * 109.02658 * 162.00304 * 7 5 4 9 9 C 1.54168 * 112.60848 * 93.01398 * 8 7 5 10 10 C 1.53817 * 111.97532 * 318.49027 * 9 8 7 11 11 C 1.50824 * 111.62000 * 319.04506 * 10 9 8 12 12 N 1.39779 * 109.02256 * 304.17435 * 5 4 2 13 13 C 1.46908 * 110.99715 * 309.71478 * 12 5 4 14 14 C 1.52992 * 109.47123 * 169.37844 * 13 12 5 15 15 C 1.53000 * 109.47291 * 185.77224 * 14 13 12 16 16 C 1.50704 * 109.47183 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99516 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99824 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46731 * 90.00495 * 20 18 16 22 22 H 1.48500 * 109.46877 * 209.99632 * 20 18 16 23 23 H 1.48501 * 109.47394 * 330.00080 * 20 18 16 24 24 H 1.08997 * 109.46679 * 239.99658 * 1 2 3 25 25 H 1.09003 * 109.47077 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47544 * 119.99299 * 1 2 3 27 27 H 1.08998 * 109.46774 * 65.16395 * 4 2 1 28 28 H 1.09002 * 109.46695 * 305.16843 * 4 2 1 29 29 H 1.09007 * 109.54299 * 281.86305 * 7 5 4 30 30 H 1.08995 * 109.55143 * 42.04276 * 7 5 4 31 31 H 1.08994 * 108.85351 * 213.82388 * 8 7 5 32 32 H 1.09001 * 108.85190 * 332.21012 * 8 7 5 33 33 H 1.09007 * 108.98501 * 79.13496 * 9 8 7 34 34 H 1.09003 * 108.98028 * 197.84534 * 9 8 7 35 35 H 1.08991 * 109.05214 * 79.59237 * 10 9 8 36 36 H 1.09000 * 109.05166 * 198.56780 * 10 9 8 37 37 H 1.09003 * 109.74582 * 335.41569 * 11 10 9 38 38 H 1.08997 * 109.74493 * 214.69308 * 11 10 9 39 39 H 1.08999 * 109.46693 * 49.38107 * 13 12 5 40 40 H 1.08998 * 109.46934 * 289.38043 * 13 12 5 41 41 H 1.09006 * 109.47364 * 65.77124 * 14 13 12 42 42 H 1.09005 * 109.47298 * 305.77474 * 14 13 12 43 43 H 1.09000 * 109.46730 * 299.99735 * 15 14 13 44 44 H 1.08998 * 109.47192 * 59.99952 * 15 14 13 45 45 H 0.97006 * 119.99637 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7597 -1.0285 0.1294 6 1 4.3036 -1.9682 0.0341 7 6 4.0411 -0.4250 1.5228 8 6 5.5109 -0.5609 1.8295 9 6 6.3198 0.6856 1.4187 10 6 5.8710 1.2396 0.0558 11 6 5.6000 0.1326 -0.9321 12 7 4.1549 -0.1672 -0.8981 13 6 3.6875 -0.6548 -2.2027 14 6 3.9024 0.4304 -3.2595 15 6 3.2863 -0.0200 -4.5856 16 6 3.4985 1.0487 -5.6268 17 1 4.0209 1.9579 -5.3686 18 6 3.0266 0.8651 -6.9092 19 7 3.2114 1.7980 -7.8176 20 14 2.1249 -0.7086 -7.3562 21 1 0.6707 -0.5320 -7.1125 22 1 2.3522 -1.0189 -8.7905 23 1 2.6348 -1.8256 -6.5211 24 1 -0.3632 -0.5139 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 2.0684 -1.8351 -0.9334 28 1 1.9296 -1.9160 0.8393 29 1 3.7639 0.6292 1.5262 30 1 3.4594 -0.9574 2.2752 31 1 5.6337 -0.7234 2.9002 32 1 5.9033 -1.4269 1.2965 33 1 6.1891 1.4586 2.1761 34 1 7.3757 0.4206 1.3635 35 1 4.9621 1.8255 0.1917 36 1 6.6543 1.8853 -0.3412 37 1 6.1670 -0.7559 -0.6543 38 1 5.8858 0.4545 -1.9334 39 1 2.6266 -0.8970 -2.1411 40 1 4.2486 -1.5474 -2.4792 41 1 4.9707 0.6000 -3.3942 42 1 3.4261 1.3549 -2.9330 43 1 3.7626 -0.9445 -4.9121 44 1 2.2180 -0.1895 -4.4509 45 1 2.8797 1.6687 -8.7200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093514331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:08 Heat of formation + Delta-G solvation = -58.570290 kcal Electronic energy + Delta-G solvation = -21846.677617 eV Core-core repulsion = 18863.267233 eV Total energy + Delta-G solvation = -2983.410383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46477 -39.25320 -36.64967 -35.26226 -34.22971 -32.99171 -31.52643 -29.40710 -28.66079 -26.92165 -24.65575 -23.85835 -21.86439 -21.72750 -20.23524 -19.84127 -18.88307 -17.41354 -16.95083 -16.41747 -16.24428 -15.95310 -15.78449 -15.45019 -15.07908 -14.91658 -14.85893 -14.49168 -13.77473 -13.67577 -13.58373 -13.30378 -13.04911 -12.95456 -12.78220 -12.65953 -12.63314 -12.34256 -12.00497 -11.82634 -11.66433 -11.51012 -11.40714 -11.35794 -11.19954 -11.12888 -10.94960 -10.75645 -10.24629 -8.83007 -8.29396 -6.34203 1.35051 1.38161 1.39158 1.50333 2.36675 2.99550 3.05588 3.41689 3.75827 3.88900 3.94840 4.10617 4.22684 4.29730 4.33644 4.39393 4.42276 4.51258 4.63761 4.67304 4.70398 4.71568 4.79079 4.81382 4.88162 4.93967 4.97234 4.99683 5.02547 5.09120 5.19235 5.26537 5.29612 5.36341 5.38347 5.51978 5.54258 5.62920 5.65174 5.66805 6.26611 6.35320 6.71880 6.77054 6.99130 7.30161 8.88121 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.005283 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.034630 B = 5298.351236 C = 6056.224683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.341 3.659 3 O -0.461 6.461 4 C -0.177 4.177 5 C 0.111 3.889 6 H 0.031 0.969 7 C -0.111 4.111 8 C -0.116 4.116 9 C -0.111 4.111 10 C -0.114 4.114 11 C 0.066 3.934 12 N -0.544 5.544 13 C 0.065 3.935 14 C -0.085 4.085 15 C -0.006 4.006 16 C -0.534 4.534 17 H 0.022 0.978 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.243 1.243 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 -11.742 22.660 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.216 3.784 3 O -0.334 6.334 4 C -0.214 4.214 5 C 0.001 3.999 6 H 0.049 0.951 7 C -0.149 4.149 8 C -0.153 4.153 9 C -0.149 4.149 10 C -0.152 4.152 11 C -0.061 4.061 12 N -0.269 5.269 13 C -0.062 4.062 14 C -0.123 4.123 15 C -0.044 4.044 16 C -0.572 4.572 17 H 0.041 0.959 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.166 1.166 24 H 0.134 0.866 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.502 -10.733 22.617 25.079 hybrid contribution 0.153 -0.527 -1.127 1.253 sum -1.349 -11.259 21.490 24.298 Atomic orbital electron populations 1.22355 0.93453 1.04395 1.05801 1.24834 0.92409 0.90478 0.70710 1.90465 1.72391 1.35869 1.34709 1.22615 0.94848 0.97928 1.06020 1.20414 0.94462 0.92898 0.92137 0.95096 1.21552 0.96601 1.01991 0.94745 1.21366 0.94954 0.97634 1.01362 1.21873 0.99467 0.97685 0.95881 1.21338 1.00800 0.97776 0.95276 1.21788 0.86837 0.98091 0.99345 1.58696 1.15178 1.50095 1.02898 1.22146 1.00513 0.95371 0.88179 1.21295 0.99250 0.97878 0.93894 1.19465 0.96098 0.95555 0.93261 1.21499 1.36415 1.03621 0.95701 0.95928 1.26119 0.96691 1.00706 0.96066 1.70096 1.48650 1.36578 1.04244 0.85561 0.79254 0.79703 0.77534 1.18871 1.20911 1.16591 0.86617 0.91729 0.88406 0.87784 0.85248 0.92014 0.90087 0.90928 0.92585 0.92221 0.91712 0.92539 0.92546 0.93598 0.92291 0.90256 0.94929 0.93963 0.94592 0.96023 0.96283 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.41 10.26 71.24 0.73 -2.67 16 2 C 0.34 7.95 6.20 29.10 0.18 8.13 16 3 O -0.46 -15.19 14.15 -1.46 -0.02 -15.21 16 4 C -0.18 -3.22 4.75 29.85 0.14 -3.08 16 5 C 0.11 2.50 1.64 46.68 0.08 2.57 16 6 H 0.03 0.67 7.54 -2.39 -0.02 0.65 16 7 C -0.11 -2.27 4.49 30.35 0.14 -2.13 16 8 C -0.12 -2.13 5.31 30.26 0.16 -1.97 16 9 C -0.11 -2.30 5.91 31.27 0.18 -2.12 16 10 C -0.11 -3.06 5.41 30.16 0.16 -2.90 16 11 C 0.07 1.90 5.16 85.46 0.44 2.34 16 12 N -0.54 -15.98 2.20 -886.89 -1.95 -17.92 16 13 C 0.06 2.11 4.40 86.30 0.38 2.49 16 14 C -0.09 -3.64 4.93 30.59 0.15 -3.49 16 15 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 16 C -0.53 -32.49 9.66 25.60 0.25 -32.24 16 17 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 18 C 0.00 0.02 5.47 84.66 0.46 0.48 16 19 N -0.95 -61.95 13.96 21.45 0.30 -61.66 16 20 Si 0.96 44.88 27.47 68.60 1.88 46.76 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 24 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.27 8.12 -2.39 -0.02 1.26 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.83 6.15 -2.39 -0.01 1.82 16 28 H 0.13 1.39 8.01 -2.39 -0.02 1.37 16 29 H 0.06 1.63 5.74 -2.38 -0.01 1.62 16 30 H 0.08 1.27 7.92 -2.39 -0.02 1.25 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.03 6.57 -2.39 -0.02 1.02 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.82 7.26 -2.39 -0.02 1.81 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.18 6.66 -2.39 -0.02 1.16 16 38 H 0.06 1.95 5.67 -2.39 -0.01 1.93 16 39 H 0.08 2.40 5.07 -2.39 -0.01 2.39 16 40 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 1.85 6.28 -2.38 -0.01 1.84 16 42 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 44 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 45 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -73.69 333.37 4.68 -69.01 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.89 Total: 13.76 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.58 Total: -34.75 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.65 Total: -79.58 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.02 Total: -15.21 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -73.69 4.68 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093514331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.443 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds