Wall clock time and date at job start Mon Mar 30 2020 07:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 120.00033 * 2 1 4 4 C 1.50700 * 119.99953 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47199 * 185.65027 * 4 2 1 6 6 H 1.09001 * 108.78460 * 308.11312 * 5 4 2 7 7 C 1.50443 * 108.81578 * 66.51796 * 5 4 2 8 8 C 1.54300 * 108.49974 * 214.59086 * 7 5 4 9 9 C 1.45881 * 112.18798 * 281.46138 * 8 7 5 10 10 C 1.54314 * 112.18573 * 61.12567 * 9 8 7 11 11 C 1.50450 * 108.48602 * 281.46252 * 10 9 8 12 12 N 1.47997 * 112.82668 * 93.73061 * 11 10 9 13 13 C 1.46910 * 110.99850 * 84.83290 * 12 11 10 14 14 C 1.53005 * 109.46877 * 72.57495 * 13 12 11 15 15 C 1.53003 * 109.46829 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46966 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99720 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99672 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46995 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47099 * 119.99471 * 20 18 16 23 23 H 1.48492 * 109.47104 * 239.99899 * 20 18 16 24 24 H 1.08993 * 109.47638 * 270.00254 * 1 2 3 25 25 H 1.09004 * 109.46951 * 30.00964 * 1 2 3 26 26 H 1.09003 * 109.47080 * 149.99693 * 1 2 3 27 27 H 1.09003 * 109.46749 * 65.65059 * 4 2 1 28 28 H 1.09000 * 109.47459 * 305.65165 * 4 2 1 29 29 H 1.08997 * 109.62959 * 94.88507 * 7 5 4 30 30 H 1.09007 * 109.62996 * 334.29565 * 7 5 4 31 31 H 1.09008 * 108.93732 * 160.76821 * 8 7 5 32 32 H 1.08993 * 108.87053 * 42.11526 * 8 7 5 33 33 H 1.08997 * 108.93871 * 300.42439 * 9 8 7 34 34 H 1.09008 * 108.86730 * 181.76879 * 9 8 7 35 35 H 1.08999 * 109.63438 * 161.76743 * 10 9 8 36 36 H 1.08998 * 109.63491 * 41.16369 * 10 9 8 37 37 H 1.08993 * 108.80895 * 214.59337 * 11 10 9 38 38 H 1.08998 * 108.80896 * 332.86867 * 11 10 9 39 39 H 1.08996 * 109.46968 * 192.57261 * 13 12 11 40 40 H 1.08998 * 109.46879 * 312.57392 * 13 12 11 41 41 H 1.08996 * 109.46776 * 300.00077 * 14 13 12 42 42 H 1.09001 * 109.47031 * 59.99953 * 14 13 12 43 43 H 1.08994 * 109.47260 * 300.00386 * 15 14 13 44 44 H 1.08998 * 109.46742 * 60.00011 * 15 14 13 45 45 H 0.96998 * 119.99431 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7586 -1.0290 0.1425 6 1 4.0543 -0.3004 -0.6124 7 6 4.0179 -0.4477 1.5056 8 6 5.1656 0.5771 1.3906 9 6 6.4738 -0.0655 1.3278 10 6 6.6114 -0.9881 0.0985 11 6 5.8986 -2.2805 0.3900 12 7 4.5005 -2.2873 -0.0956 13 6 4.4366 -2.6764 -1.5108 14 6 4.7228 -4.1738 -1.6414 15 6 4.6556 -4.5791 -3.1153 16 6 4.9380 -6.0538 -3.2440 17 1 5.1443 -6.6430 -2.3627 18 6 4.9330 -6.6507 -4.4869 19 7 4.6813 -5.9331 -5.5599 20 14 5.2824 -8.4788 -4.6464 21 1 5.5327 -9.0542 -3.3005 22 1 4.1132 -9.1541 -5.2644 23 1 6.4797 -8.6811 -5.5011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5139 27 1 2.0752 -1.8320 -0.9355 28 1 1.9235 -1.9189 0.8359 29 1 4.3043 -1.2426 2.1942 30 1 3.1183 0.0491 1.8691 31 1 5.1376 1.2384 2.2568 32 1 5.0193 1.1705 0.4882 33 1 6.6215 -0.6562 2.2319 34 1 7.2432 0.7053 1.2795 35 1 7.6656 -1.1867 -0.0942 36 1 6.1609 -0.5093 -0.7709 37 1 6.4406 -3.0963 -0.0881 38 1 5.8973 -2.4460 1.4673 39 1 3.4425 -2.4610 -1.9023 40 1 5.1796 -2.1138 -2.0761 41 1 5.7169 -4.3891 -1.2499 42 1 3.9798 -4.7363 -1.0760 43 1 3.6613 -4.3636 -3.5064 44 1 5.3983 -4.0165 -3.6809 45 1 4.6782 -6.3531 -6.4343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093514332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:12 Heat of formation + Delta-G solvation = -60.398690 kcal Electronic energy + Delta-G solvation = -21255.207718 eV Core-core repulsion = 18271.718049 eV Total energy + Delta-G solvation = -2983.489669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25550 -38.66569 -35.27733 -33.63108 -32.97830 -31.08107 -30.80798 -28.17259 -27.16599 -25.31554 -23.62282 -22.54308 -20.70358 -20.02429 -19.62119 -18.80837 -16.64568 -16.29318 -15.94007 -15.52465 -14.96155 -14.68602 -14.51352 -14.40509 -14.04647 -13.38257 -13.31490 -13.05799 -12.73395 -12.57084 -12.35976 -12.20906 -12.13928 -11.64609 -11.48171 -11.36319 -11.10469 -10.85234 -10.71463 -10.58227 -10.52027 -10.43133 -10.31392 -10.19386 -9.64237 -9.53535 -9.27843 -9.01388 -8.32063 -7.85366 -5.97402 -3.99132 1.90812 3.32581 3.40047 3.44525 3.75615 4.36168 4.49712 4.68124 4.71442 4.85776 4.97643 5.03080 5.14727 5.22132 5.33441 5.38169 5.38841 5.49245 5.62972 5.64737 5.65753 5.73696 5.81666 5.87681 5.94028 5.97558 6.08534 6.12290 6.13807 6.18541 6.26959 6.38172 6.41717 6.46384 6.76368 6.84726 7.19351 7.42860 7.49410 7.52982 7.72442 7.87356 8.03740 8.47408 9.08592 9.64881 11.14101 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.004276 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.634220 B = 6545.850481 C = 7532.574502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.355 3.645 3 O -0.460 6.460 4 C -0.172 4.172 5 C 0.101 3.899 6 H 0.046 0.954 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.149 4.149 11 C 0.060 3.940 12 N -0.546 5.546 13 C 0.056 3.944 14 C -0.101 4.101 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 12.487 14.420 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.230 3.770 3 O -0.334 6.334 4 C -0.209 4.209 5 C -0.007 4.007 6 H 0.064 0.936 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.188 4.188 11 C -0.068 4.068 12 N -0.271 5.271 13 C -0.071 4.071 14 C -0.139 4.139 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.888 12.698 14.501 19.663 hybrid contribution 0.490 -0.501 -0.785 1.052 sum -3.398 12.197 13.716 18.667 Atomic orbital electron populations 1.22300 0.94680 1.04817 1.04451 1.24669 0.91909 0.90444 0.69940 1.90402 1.71943 1.35251 1.35787 1.22315 0.96037 0.96957 1.05611 1.21041 0.91762 0.90547 0.97336 0.93575 1.21413 0.98470 0.98093 0.96657 1.20508 0.94750 0.98138 1.01977 1.20564 0.97406 0.99005 0.98329 1.21931 1.01090 0.97578 0.98243 1.21874 0.87503 0.96723 1.00662 1.61840 1.14437 1.30887 1.19892 1.22302 1.00390 0.98320 0.86102 1.21633 1.00269 0.91760 1.00260 1.19082 0.96997 0.96040 0.89546 1.21297 1.47300 0.94244 0.92597 0.92636 1.25028 0.95479 0.97997 0.96022 1.69982 1.49961 1.35593 0.98130 0.86560 0.77837 0.85671 0.78089 1.19716 1.21049 1.21093 0.88846 0.89947 0.89478 0.87649 0.87847 0.91075 0.91718 0.92612 0.92032 0.92193 0.92713 0.91511 0.91829 0.90512 0.91402 0.91638 0.95270 0.93486 0.92718 0.96747 0.96911 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.55 10.25 36.01 0.37 -1.19 16 2 C 0.35 3.86 6.49 -29.03 -0.19 3.68 16 3 O -0.46 -6.45 15.46 6.00 0.09 -6.36 16 4 C -0.17 -1.94 5.13 -27.89 -0.14 -2.09 16 5 C 0.10 1.33 1.00 -68.39 -0.07 1.26 16 6 H 0.05 0.70 6.05 -51.93 -0.31 0.38 16 7 C -0.11 -1.28 4.58 -27.33 -0.13 -1.40 16 8 C -0.12 -1.33 5.30 -29.42 -0.16 -1.49 16 9 C -0.12 -1.26 5.30 -29.41 -0.16 -1.42 16 10 C -0.15 -1.87 5.52 -27.32 -0.15 -2.02 16 11 C 0.06 0.82 4.99 -4.49 -0.02 0.80 16 12 N -0.55 -8.04 4.32 -227.92 -0.99 -9.02 16 13 C 0.06 0.97 4.74 -3.82 -0.02 0.95 16 14 C -0.10 -2.09 5.23 -26.73 -0.14 -2.23 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.11 1.25 6.21 -51.93 -0.32 0.93 16 28 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 29 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 30 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16 33 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 34 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.89 6.64 -51.93 -0.34 0.55 16 37 H 0.08 1.15 6.22 -51.93 -0.32 0.83 16 38 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 39 H 0.07 1.11 6.03 -51.93 -0.31 0.80 16 40 H 0.03 0.53 7.59 -51.93 -0.39 0.13 16 41 H 0.05 0.97 6.57 -51.93 -0.34 0.63 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -31.08 339.79 -9.34 -40.43 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.94 Total: -2.27 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.35 Total: -18.24 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.25 Total: -35.40 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.09 Total: -6.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.08 -9.34 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093514332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds