Wall clock time and date at job start Mon Mar 30 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 120.00033 * 2 1 4 4 C 1.50700 * 119.99953 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47199 * 185.65027 * 4 2 1 6 6 H 1.09001 * 108.78460 * 308.11312 * 5 4 2 7 7 C 1.50443 * 108.81578 * 66.51796 * 5 4 2 8 8 C 1.54300 * 108.49974 * 214.59086 * 7 5 4 9 9 C 1.45881 * 112.18798 * 281.46138 * 8 7 5 10 10 C 1.54314 * 112.18573 * 61.12567 * 9 8 7 11 11 C 1.50450 * 108.48602 * 281.46252 * 10 9 8 12 12 N 1.47997 * 112.82668 * 93.73061 * 11 10 9 13 13 C 1.46910 * 110.99850 * 84.83290 * 12 11 10 14 14 C 1.53005 * 109.46877 * 72.57495 * 13 12 11 15 15 C 1.53003 * 109.46829 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46966 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99720 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99672 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46995 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47099 * 119.99471 * 20 18 16 23 23 H 1.48492 * 109.47104 * 239.99899 * 20 18 16 24 24 H 1.08993 * 109.47638 * 270.00254 * 1 2 3 25 25 H 1.09004 * 109.46951 * 30.00964 * 1 2 3 26 26 H 1.09003 * 109.47080 * 149.99693 * 1 2 3 27 27 H 1.09003 * 109.46749 * 65.65059 * 4 2 1 28 28 H 1.09000 * 109.47459 * 305.65165 * 4 2 1 29 29 H 1.08997 * 109.62959 * 94.88507 * 7 5 4 30 30 H 1.09007 * 109.62996 * 334.29565 * 7 5 4 31 31 H 1.09008 * 108.93732 * 160.76821 * 8 7 5 32 32 H 1.08993 * 108.87053 * 42.11526 * 8 7 5 33 33 H 1.08997 * 108.93871 * 300.42439 * 9 8 7 34 34 H 1.09008 * 108.86730 * 181.76879 * 9 8 7 35 35 H 1.08999 * 109.63438 * 161.76743 * 10 9 8 36 36 H 1.08998 * 109.63491 * 41.16369 * 10 9 8 37 37 H 1.08993 * 108.80895 * 214.59337 * 11 10 9 38 38 H 1.08998 * 108.80896 * 332.86867 * 11 10 9 39 39 H 1.08996 * 109.46968 * 192.57261 * 13 12 11 40 40 H 1.08998 * 109.46879 * 312.57392 * 13 12 11 41 41 H 1.08996 * 109.46776 * 300.00077 * 14 13 12 42 42 H 1.09001 * 109.47031 * 59.99953 * 14 13 12 43 43 H 1.08994 * 109.47260 * 300.00386 * 15 14 13 44 44 H 1.08998 * 109.46742 * 60.00011 * 15 14 13 45 45 H 0.96998 * 119.99431 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7586 -1.0290 0.1425 6 1 4.0543 -0.3004 -0.6124 7 6 4.0179 -0.4477 1.5056 8 6 5.1656 0.5771 1.3906 9 6 6.4738 -0.0655 1.3278 10 6 6.6114 -0.9881 0.0985 11 6 5.8986 -2.2805 0.3900 12 7 4.5005 -2.2873 -0.0956 13 6 4.4366 -2.6764 -1.5108 14 6 4.7228 -4.1738 -1.6414 15 6 4.6556 -4.5791 -3.1153 16 6 4.9380 -6.0538 -3.2440 17 1 5.1443 -6.6430 -2.3627 18 6 4.9330 -6.6507 -4.4869 19 7 4.6813 -5.9331 -5.5599 20 14 5.2824 -8.4788 -4.6464 21 1 5.5327 -9.0542 -3.3005 22 1 4.1132 -9.1541 -5.2644 23 1 6.4797 -8.6811 -5.5011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5139 27 1 2.0752 -1.8320 -0.9355 28 1 1.9235 -1.9189 0.8359 29 1 4.3043 -1.2426 2.1942 30 1 3.1183 0.0491 1.8691 31 1 5.1376 1.2384 2.2568 32 1 5.0193 1.1705 0.4882 33 1 6.6215 -0.6562 2.2319 34 1 7.2432 0.7053 1.2795 35 1 7.6656 -1.1867 -0.0942 36 1 6.1609 -0.5093 -0.7709 37 1 6.4406 -3.0963 -0.0881 38 1 5.8973 -2.4460 1.4673 39 1 3.4425 -2.4610 -1.9023 40 1 5.1796 -2.1138 -2.0761 41 1 5.7169 -4.3891 -1.2499 42 1 3.9798 -4.7363 -1.0760 43 1 3.6613 -4.3636 -3.5064 44 1 5.3983 -4.0165 -3.6809 45 1 4.6782 -6.3531 -6.4343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093514332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:11 Heat of formation + Delta-G solvation = -78.275149 kcal Electronic energy + Delta-G solvation = -21255.982899 eV Core-core repulsion = 18271.718049 eV Total energy + Delta-G solvation = -2984.264850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26500 -39.68877 -36.70133 -35.21082 -34.32811 -32.81910 -31.61867 -29.37692 -28.43371 -26.87045 -24.68584 -24.23117 -22.06900 -21.23630 -20.69649 -19.91324 -18.44045 -17.68484 -17.02000 -16.56282 -16.43787 -16.04218 -15.65370 -15.61222 -15.15665 -14.74168 -14.41762 -14.37559 -14.00628 -13.76648 -13.63895 -13.27034 -13.10997 -12.99290 -12.94439 -12.71367 -12.53442 -12.40788 -12.26988 -12.08524 -11.75497 -11.54952 -11.47108 -11.36609 -11.31618 -11.05024 -11.01809 -10.54053 -10.52453 -9.09619 -8.18640 -6.29376 1.05111 1.41188 1.41362 1.55043 2.42052 2.71120 3.14748 3.40698 3.69530 3.76135 3.87456 4.03602 4.19133 4.21908 4.26908 4.36345 4.42699 4.51425 4.60835 4.62551 4.65861 4.73704 4.78308 4.82150 4.86954 4.91305 4.99258 5.05223 5.10721 5.15354 5.20524 5.21443 5.23677 5.27843 5.34761 5.41697 5.46383 5.56108 5.77591 5.88578 6.15320 6.30065 6.32116 6.61792 6.87962 7.40017 8.93531 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.004276 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.634220 B = 6545.850481 C = 7532.574502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.358 3.642 3 O -0.496 6.496 4 C -0.173 4.173 5 C 0.102 3.898 6 H 0.021 0.979 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.147 4.147 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.069 3.931 14 C -0.084 4.084 15 C 0.025 3.975 16 C -0.539 4.539 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.279 1.279 24 H 0.116 0.884 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.015 0.985 41 H 0.047 0.953 42 H 0.056 0.944 43 H -0.007 1.007 44 H -0.015 1.015 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 11.748 16.362 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.237 3.763 3 O -0.373 6.373 4 C -0.211 4.211 5 C -0.005 4.005 6 H 0.039 0.961 7 C -0.140 4.140 8 C -0.152 4.152 9 C -0.148 4.148 10 C -0.186 4.186 11 C -0.069 4.069 12 N -0.268 5.268 13 C -0.059 4.059 14 C -0.122 4.122 15 C -0.012 4.012 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.205 1.205 24 H 0.134 0.866 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.011 0.989 44 H 0.003 0.997 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.324 11.960 16.461 20.802 hybrid contribution 0.623 -0.241 -1.407 1.558 sum -3.701 11.719 15.054 19.433 Atomic orbital electron populations 1.22298 0.91665 1.05563 1.06075 1.25029 0.93469 0.89434 0.68392 1.90402 1.72950 1.36220 1.37749 1.22362 0.94913 0.97759 1.06044 1.21080 0.92708 0.89076 0.97652 0.96050 1.21377 0.98875 0.98228 0.95566 1.20493 0.94945 0.98114 1.01624 1.20526 0.97413 0.99036 0.97801 1.21887 1.01088 0.97240 0.98367 1.21944 0.86828 0.96766 1.01404 1.61834 1.15382 1.31976 1.17562 1.22000 1.00007 0.95917 0.87967 1.21361 1.00366 0.93943 0.96490 1.18980 0.94678 0.95022 0.92541 1.21714 1.47434 0.95480 0.93036 0.92209 1.25979 0.95024 1.03250 0.95586 1.70113 1.50783 1.37886 0.98780 0.85404 0.77836 0.79315 0.78536 1.18509 1.20276 1.20522 0.86597 0.89915 0.87999 0.88353 0.85862 0.90322 0.91227 0.91113 0.94083 0.90731 0.91674 0.90838 0.93989 0.92064 0.89604 0.91455 0.96718 0.93426 0.92498 0.98904 0.99676 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 10.25 71.24 0.73 -1.86 16 2 C 0.36 7.45 6.49 29.10 0.19 7.64 16 3 O -0.50 -13.85 15.46 -1.45 -0.02 -13.87 16 4 C -0.17 -3.76 5.13 29.85 0.15 -3.60 16 5 C 0.10 2.65 1.00 43.87 0.04 2.69 16 6 H 0.02 0.67 6.05 -2.39 -0.01 0.65 16 7 C -0.10 -2.26 4.58 30.21 0.14 -2.12 16 8 C -0.11 -2.48 5.30 28.85 0.15 -2.32 16 9 C -0.11 -2.23 5.30 28.86 0.15 -2.07 16 10 C -0.15 -3.62 5.52 30.22 0.17 -3.45 16 11 C 0.06 1.54 4.99 85.27 0.43 1.96 16 12 N -0.54 -15.77 4.32 -875.02 -3.78 -19.55 16 13 C 0.07 2.44 4.74 86.30 0.41 2.85 16 14 C -0.08 -3.50 5.23 30.60 0.16 -3.34 16 15 C 0.03 1.36 4.97 29.85 0.15 1.51 16 16 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 19 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 20 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.10 2.30 6.21 -2.39 -0.01 2.28 16 28 H 0.12 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.08 1.63 7.08 -2.39 -0.02 1.61 16 30 H 0.07 1.48 6.36 -2.38 -0.02 1.46 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.06 7.51 -2.39 -0.02 1.04 16 33 H 0.07 1.32 7.52 -2.39 -0.02 1.30 16 34 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.21 6.64 -2.39 -0.02 1.20 16 37 H 0.06 1.82 6.22 -2.39 -0.01 1.80 16 38 H 0.09 2.00 6.59 -2.39 -0.02 1.98 16 39 H 0.07 2.35 6.03 -2.39 -0.01 2.33 16 40 H 0.01 0.56 7.59 -2.39 -0.02 0.54 16 41 H 0.05 1.97 6.57 -2.39 -0.02 1.96 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.68 339.79 3.01 -64.67 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.94 Total: 11.89 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 3.56 Total: -32.49 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -3.50 Total: -76.73 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.02 Total: -13.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.68 3.01 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093514332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.609 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds