Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00075 * 2 1 4 4 C 1.50698 * 109.47310 * 66.04151 * 3 2 1 5 5 H 1.07994 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99865 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99977 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00279 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47115 * 89.99965 * 8 6 4 10 10 H 1.48498 * 109.47438 * 209.99902 * 8 6 4 11 11 H 1.48505 * 109.47107 * 329.99803 * 8 6 4 12 12 C 1.46897 * 111.00430 * 236.04107 * 2 1 3 13 13 H 1.08993 * 109.61841 * 179.17798 * 12 2 1 14 14 C 1.53186 * 109.54232 * 58.95258 * 12 2 1 15 15 C 1.53090 * 109.15318 * 183.13023 * 14 12 2 16 16 O 1.42907 * 109.42488 * 57.61304 * 15 14 12 17 17 C 1.42878 * 114.11912 * 298.88199 * 16 15 14 18 18 C 1.52981 * 109.52807 * 301.12835 * 17 16 15 19 19 C 1.52998 * 109.50599 * 299.77559 * 18 17 16 20 20 C 1.53011 * 109.46978 * 300.01902 * 19 18 17 21 21 C 1.53003 * 109.44013 * 60.04336 * 20 19 18 22 22 C 1.52998 * 109.47725 * 299.95645 * 21 20 19 23 23 C 1.53096 * 109.43339 * 61.09536 * 17 16 15 24 24 H 1.09000 * 109.46985 * 183.95764 * 1 2 3 25 25 H 1.08997 * 109.46851 * 303.96020 * 1 2 3 26 26 H 1.09001 * 109.46440 * 63.95650 * 1 2 3 27 27 H 1.08998 * 109.47447 * 186.04620 * 3 2 1 28 28 H 1.09007 * 109.46910 * 306.04345 * 3 2 1 29 29 H 0.97000 * 120.00245 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.52620 * 303.03209 * 14 12 2 31 31 H 1.09001 * 109.52227 * 63.22501 * 14 12 2 32 32 H 1.08993 * 109.47838 * 177.60484 * 15 14 12 33 33 H 1.09005 * 109.47911 * 297.62928 * 15 14 12 34 34 H 1.09000 * 109.46270 * 59.78628 * 18 17 16 35 35 H 1.09004 * 109.46529 * 179.76845 * 18 17 16 36 36 H 1.08993 * 109.47692 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46799 * 60.01419 * 19 18 17 38 38 H 1.09002 * 109.47598 * 300.05538 * 20 19 18 39 39 H 1.09000 * 109.47721 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.46885 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47268 * 59.96116 * 21 20 19 42 42 H 1.08996 * 109.46582 * 299.96349 * 22 21 20 43 43 H 1.09000 * 109.45773 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.51609 * 182.51756 * 23 17 16 45 45 H 1.08999 * 109.52584 * 62.33018 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5283 7 7 1.7135 3.9395 2.6612 8 14 2.9988 4.2766 0.2302 9 1 2.0614 4.9803 -0.6815 10 1 3.8855 5.2684 0.8901 11 1 3.8224 3.3182 -0.5499 12 6 1.9956 -0.7660 -1.1375 13 1 3.0851 -0.7391 -1.1239 14 6 1.4842 -0.1565 -2.4465 15 6 1.9737 -1.0069 -3.6215 16 8 1.5210 -2.3522 -3.4556 17 6 2.0051 -2.9893 -2.2719 18 6 3.5348 -3.0054 -2.2889 19 6 4.0239 -3.7799 -3.5144 20 6 3.4994 -5.2160 -3.4530 21 6 1.9695 -5.1991 -3.4381 22 6 1.4798 -4.4251 -2.2127 23 6 1.5175 -2.2182 -1.0426 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5741 0.8524 26 1 -0.3632 0.4512 -0.9234 27 1 3.0798 1.3445 -0.1082 28 1 1.5612 1.9274 -0.8310 29 1 1.9880 4.8556 2.8231 30 1 0.3943 -0.1387 -2.4388 31 1 1.8653 0.8596 -2.5485 32 1 1.5776 -0.6023 -4.5529 33 1 3.0632 -0.9913 -3.6526 34 1 3.9083 -1.9824 -2.3328 35 1 3.9030 -3.4880 -1.3836 36 1 5.1137 -3.7914 -3.5258 37 1 3.6560 -3.2971 -4.4199 38 1 3.8663 -5.6984 -2.5471 39 1 3.8482 -5.7679 -4.3258 40 1 1.5954 -6.2221 -3.3948 41 1 1.6027 -4.7159 -4.3436 42 1 1.8461 -4.9088 -1.3072 43 1 0.3899 -4.4129 -2.2026 44 1 1.9227 -2.6768 -0.1406 45 1 0.4283 -2.2414 -1.0063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = -58.389066 kcal Electronic energy + Delta-G solvation = -22155.462732 eV Core-core repulsion = 19172.060207 eV Total energy + Delta-G solvation = -2983.402525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60773 -37.45996 -35.83722 -32.84385 -31.80535 -31.31588 -30.52404 -28.08786 -26.80676 -25.36069 -23.29397 -22.81302 -22.15933 -20.60663 -19.53012 -18.68677 -16.94673 -16.18198 -15.87752 -15.35732 -14.82657 -14.63128 -14.38107 -14.01904 -13.84513 -13.43766 -13.34257 -13.22869 -12.64960 -12.39692 -12.31614 -12.24310 -12.02179 -11.63331 -11.50417 -11.11394 -11.07804 -10.94860 -10.76883 -10.64916 -10.58369 -10.47694 -10.32739 -10.18957 -9.87298 -9.52029 -9.28571 -9.19985 -8.58142 -7.32219 -6.05981 -4.02968 3.26270 3.34212 3.35551 3.83895 4.40678 4.52461 4.66953 4.71654 4.84864 5.03779 5.08829 5.12724 5.20189 5.26750 5.30926 5.42109 5.46904 5.48696 5.54354 5.59060 5.66924 5.69876 5.85109 5.89715 5.94714 6.02201 6.07422 6.11202 6.14108 6.16535 6.19136 6.25667 6.29694 6.39210 6.43134 6.59268 6.71983 6.87589 7.00860 7.40566 7.60033 7.91460 8.06186 8.66014 9.02922 9.55931 11.07284 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.004764 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.088276 B = 5875.390130 C = 6117.411575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.523 5.523 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.083 3.917 13 H 0.076 0.924 14 C -0.192 4.192 15 C 0.065 3.935 16 O -0.371 6.371 17 C 0.123 3.877 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.102 4.102 23 C -0.133 4.133 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.015 0.985 27 H 0.025 0.975 28 H -0.015 1.015 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -16.335 -13.694 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.245 5.245 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.027 4.027 13 H 0.094 0.906 14 C -0.231 4.231 15 C -0.012 4.012 16 O -0.290 6.290 17 C 0.083 3.917 18 C -0.184 4.184 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.003 0.997 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.092 -16.471 -13.256 21.246 hybrid contribution 0.438 1.401 -1.126 1.850 sum 2.530 -15.070 -14.382 20.984 Atomic orbital electron populations 1.22330 0.88596 1.00031 1.00821 1.62177 1.07388 1.16350 1.38551 1.20174 0.95010 0.84296 0.96943 1.21052 1.35485 0.97176 1.00978 0.90152 1.24893 0.95767 0.97355 0.95290 1.69890 1.46920 1.13234 1.23931 0.86879 0.80659 0.80073 0.82237 1.20358 1.21122 1.19254 1.21781 0.99317 0.93018 0.88576 0.90595 1.22925 1.02690 1.00409 0.97109 1.22482 0.98453 0.82285 0.98029 1.87887 1.72804 1.25933 1.42385 1.21421 0.92523 0.92458 0.85277 1.22174 0.95986 1.01200 0.99041 1.21455 0.99574 0.95595 0.98641 1.21527 0.95921 0.96713 1.01362 1.21460 0.95442 0.99401 0.99006 1.21507 1.01015 0.92764 0.98662 1.22263 1.01879 0.95295 0.97704 0.93146 0.90338 0.96611 0.95668 0.99715 0.92675 0.90782 0.90955 0.89572 0.93215 0.91189 0.90941 0.92416 0.91618 0.92262 0.92390 0.92416 0.91225 0.90754 0.91358 0.90469 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.64 60.07 0.52 1.11 16 2 N -0.52 -10.89 4.75 -236.10 -1.12 -12.01 16 3 C 0.16 3.93 3.23 -4.98 -0.02 3.91 16 4 C -0.51 -14.50 9.01 -34.44 -0.31 -14.81 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.11 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 12 C 0.08 1.39 2.01 -67.53 -0.14 1.26 16 13 H 0.08 1.31 6.52 -51.93 -0.34 0.97 16 14 C -0.19 -3.00 4.73 -26.59 -0.13 -3.13 16 15 C 0.06 0.85 6.52 37.20 0.24 1.09 16 16 O -0.37 -5.01 8.92 -35.23 -0.31 -5.32 16 17 C 0.12 1.52 0.68 -90.58 -0.06 1.46 16 18 C -0.15 -1.69 4.03 -26.74 -0.11 -1.80 16 19 C -0.12 -1.17 5.78 -26.73 -0.15 -1.32 16 20 C -0.12 -1.07 5.93 -26.72 -0.16 -1.23 16 21 C -0.12 -1.11 5.78 -26.73 -0.15 -1.27 16 22 C -0.10 -1.09 4.94 -26.73 -0.13 -1.22 16 23 C -0.13 -1.92 4.06 -26.59 -0.11 -2.03 16 24 H 0.05 0.85 6.26 -51.93 -0.32 0.53 16 25 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 26 H 0.02 0.29 6.22 -51.93 -0.32 -0.03 16 27 H 0.03 0.62 7.07 -51.93 -0.37 0.26 16 28 H -0.01 -0.36 6.44 -51.92 -0.33 -0.69 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.07 1.20 6.24 -51.93 -0.32 0.88 16 31 H 0.07 1.21 6.93 -51.93 -0.36 0.85 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 34 H 0.07 0.87 4.98 -51.93 -0.26 0.61 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.07 6.27 -51.93 -0.33 0.74 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -30.03 321.04 -9.09 -39.12 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.79 Total: -0.53 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.80 Total: -16.08 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.35 Total: -38.90 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.31 Total: -5.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.03 -9.09 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.271 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds