Wall clock time and date at job start Mon Mar 30 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00075 * 2 1 4 4 C 1.50698 * 109.47310 * 66.04151 * 3 2 1 5 5 H 1.07994 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99865 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99977 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00279 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47115 * 89.99965 * 8 6 4 10 10 H 1.48498 * 109.47438 * 209.99902 * 8 6 4 11 11 H 1.48505 * 109.47107 * 329.99803 * 8 6 4 12 12 C 1.46897 * 111.00430 * 236.04107 * 2 1 3 13 13 H 1.08993 * 109.61841 * 179.17798 * 12 2 1 14 14 C 1.53186 * 109.54232 * 58.95258 * 12 2 1 15 15 C 1.53090 * 109.15318 * 183.13023 * 14 12 2 16 16 O 1.42907 * 109.42488 * 57.61304 * 15 14 12 17 17 C 1.42878 * 114.11912 * 298.88199 * 16 15 14 18 18 C 1.52981 * 109.52807 * 301.12835 * 17 16 15 19 19 C 1.52998 * 109.50599 * 299.77559 * 18 17 16 20 20 C 1.53011 * 109.46978 * 300.01902 * 19 18 17 21 21 C 1.53003 * 109.44013 * 60.04336 * 20 19 18 22 22 C 1.52998 * 109.47725 * 299.95645 * 21 20 19 23 23 C 1.53096 * 109.43339 * 61.09536 * 17 16 15 24 24 H 1.09000 * 109.46985 * 183.95764 * 1 2 3 25 25 H 1.08997 * 109.46851 * 303.96020 * 1 2 3 26 26 H 1.09001 * 109.46440 * 63.95650 * 1 2 3 27 27 H 1.08998 * 109.47447 * 186.04620 * 3 2 1 28 28 H 1.09007 * 109.46910 * 306.04345 * 3 2 1 29 29 H 0.97000 * 120.00245 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.52620 * 303.03209 * 14 12 2 31 31 H 1.09001 * 109.52227 * 63.22501 * 14 12 2 32 32 H 1.08993 * 109.47838 * 177.60484 * 15 14 12 33 33 H 1.09005 * 109.47911 * 297.62928 * 15 14 12 34 34 H 1.09000 * 109.46270 * 59.78628 * 18 17 16 35 35 H 1.09004 * 109.46529 * 179.76845 * 18 17 16 36 36 H 1.08993 * 109.47692 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46799 * 60.01419 * 19 18 17 38 38 H 1.09002 * 109.47598 * 300.05538 * 20 19 18 39 39 H 1.09000 * 109.47721 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.46885 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47268 * 59.96116 * 21 20 19 42 42 H 1.08996 * 109.46582 * 299.96349 * 22 21 20 43 43 H 1.09000 * 109.45773 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.51609 * 182.51756 * 23 17 16 45 45 H 1.08999 * 109.52584 * 62.33018 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5283 7 7 1.7135 3.9395 2.6612 8 14 2.9988 4.2766 0.2302 9 1 2.0614 4.9803 -0.6815 10 1 3.8855 5.2684 0.8901 11 1 3.8224 3.3182 -0.5499 12 6 1.9956 -0.7660 -1.1375 13 1 3.0851 -0.7391 -1.1239 14 6 1.4842 -0.1565 -2.4465 15 6 1.9737 -1.0069 -3.6215 16 8 1.5210 -2.3522 -3.4556 17 6 2.0051 -2.9893 -2.2719 18 6 3.5348 -3.0054 -2.2889 19 6 4.0239 -3.7799 -3.5144 20 6 3.4994 -5.2160 -3.4530 21 6 1.9695 -5.1991 -3.4381 22 6 1.4798 -4.4251 -2.2127 23 6 1.5175 -2.2182 -1.0426 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5741 0.8524 26 1 -0.3632 0.4512 -0.9234 27 1 3.0798 1.3445 -0.1082 28 1 1.5612 1.9274 -0.8310 29 1 1.9880 4.8556 2.8231 30 1 0.3943 -0.1387 -2.4388 31 1 1.8653 0.8596 -2.5485 32 1 1.5776 -0.6023 -4.5529 33 1 3.0632 -0.9913 -3.6526 34 1 3.9083 -1.9824 -2.3328 35 1 3.9030 -3.4880 -1.3836 36 1 5.1137 -3.7914 -3.5258 37 1 3.6560 -3.2971 -4.4199 38 1 3.8663 -5.6984 -2.5471 39 1 3.8482 -5.7679 -4.3258 40 1 1.5954 -6.2221 -3.3948 41 1 1.6027 -4.7159 -4.3436 42 1 1.8461 -4.9088 -1.3072 43 1 0.3899 -4.4129 -2.2026 44 1 1.9227 -2.6768 -0.1406 45 1 0.4283 -2.2414 -1.0063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:17 Heat of formation + Delta-G solvation = -77.383039 kcal Electronic energy + Delta-G solvation = -22156.286373 eV Core-core repulsion = 19172.060207 eV Total energy + Delta-G solvation = -2984.226166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68496 -38.80559 -36.90062 -34.86146 -33.07933 -32.47343 -31.48349 -29.88344 -28.01783 -26.95850 -24.44055 -23.98740 -23.36275 -21.95740 -20.55160 -19.91696 -19.03932 -17.31361 -16.93126 -16.79770 -16.25876 -15.86144 -15.73733 -15.35805 -14.99714 -14.91000 -14.59118 -14.34939 -14.20309 -13.94598 -13.44353 -13.26178 -13.08519 -12.98936 -12.80317 -12.67366 -12.57978 -12.18368 -12.03086 -11.92880 -11.81007 -11.78334 -11.59049 -11.43149 -11.36048 -11.18643 -10.81873 -10.57180 -10.26617 -8.97226 -8.30222 -6.33456 1.31493 1.33398 1.44077 2.32005 2.84593 3.02389 3.18397 3.65979 3.81899 3.84669 3.91011 4.07088 4.11862 4.24079 4.30218 4.34654 4.42254 4.49697 4.59836 4.62166 4.66035 4.66635 4.72471 4.78250 4.81621 4.85504 4.92818 4.97623 5.04352 5.06523 5.13907 5.17801 5.25970 5.28416 5.32668 5.37817 5.38834 5.48344 5.52851 5.62368 5.98355 6.34836 6.38673 6.65034 6.72959 7.30169 8.86555 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.004764 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.088276 B = 5875.390130 C = 6117.411575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.175 3.825 4 C -0.518 4.518 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.250 1.250 12 C 0.082 3.918 13 H 0.073 0.927 14 C -0.187 4.187 15 C 0.070 3.930 16 O -0.376 6.376 17 C 0.125 3.875 18 C -0.146 4.146 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.102 4.102 23 C -0.127 4.127 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.023 0.977 27 H 0.024 0.976 28 H -0.012 1.012 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -17.696 -16.120 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.262 5.262 3 C 0.048 3.952 4 C -0.556 4.556 5 H 0.055 0.945 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.173 1.173 12 C -0.027 4.027 13 H 0.091 0.909 14 C -0.227 4.227 15 C -0.007 4.007 16 O -0.295 6.295 17 C 0.085 3.915 18 C -0.184 4.184 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.165 4.165 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.006 0.994 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.174 -17.862 -15.697 23.990 hybrid contribution 0.039 1.760 -0.283 1.783 sum 3.213 -16.102 -15.980 22.912 Atomic orbital electron populations 1.22237 0.87978 1.01143 0.99663 1.62069 1.08101 1.14701 1.41340 1.19883 0.94851 0.86001 0.94456 1.21290 1.34855 0.97531 1.01924 0.94464 1.25829 0.96937 0.98388 0.97675 1.70046 1.48563 1.13883 1.26354 0.85745 0.79312 0.78775 0.79316 1.19260 1.20533 1.17343 1.21857 0.99096 0.93936 0.87821 0.90866 1.22856 1.02100 1.00224 0.97484 1.22492 0.99012 0.81770 0.97474 1.87898 1.73059 1.25915 1.42642 1.21480 0.93206 0.92970 0.83836 1.22164 0.95188 1.00925 1.00090 1.21437 1.00157 0.95993 0.97391 1.21532 0.95416 0.96111 1.02300 1.21436 0.95866 0.99902 0.97761 1.21540 1.00887 0.91718 0.99825 1.22227 1.01502 0.93791 0.98997 0.90560 0.93579 0.95907 0.95759 0.99433 0.92406 0.91497 0.92094 0.87824 0.92350 0.92296 0.90541 0.91481 0.92314 0.91577 0.91188 0.90897 0.92322 0.89719 0.91654 0.90572 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 8.64 127.69 1.10 2.59 16 2 N -0.54 -22.55 4.75 -900.89 -4.28 -26.83 16 3 C 0.18 8.50 3.23 85.56 0.28 8.77 16 4 C -0.52 -30.40 9.01 25.60 0.23 -30.17 16 5 H 0.04 2.44 7.37 -2.91 -0.02 2.42 16 6 C 0.01 0.53 5.47 84.66 0.46 0.99 16 7 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 8 Si 0.95 44.33 27.47 68.60 1.88 46.22 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 12 C 0.08 2.67 2.01 45.04 0.09 2.76 16 13 H 0.07 2.45 6.52 -2.39 -0.02 2.43 16 14 C -0.19 -5.59 4.73 30.69 0.15 -5.45 16 15 C 0.07 1.67 6.52 72.01 0.47 2.14 16 16 O -0.38 -9.31 8.92 -148.98 -1.33 -10.64 16 17 C 0.12 2.83 0.68 -10.77 -0.01 2.82 16 18 C -0.15 -3.05 4.03 30.59 0.12 -2.93 16 19 C -0.11 -1.97 5.78 30.60 0.18 -1.79 16 20 C -0.12 -1.75 5.93 30.60 0.18 -1.57 16 21 C -0.11 -1.84 5.78 30.59 0.18 -1.66 16 22 C -0.10 -1.94 4.94 30.59 0.15 -1.79 16 23 C -0.13 -3.48 4.06 30.68 0.12 -3.36 16 24 H 0.08 2.55 6.26 -2.39 -0.01 2.53 16 25 H 0.05 2.08 6.76 -2.39 -0.02 2.06 16 26 H 0.02 0.85 6.22 -2.39 -0.01 0.83 16 27 H 0.02 1.18 7.07 -2.39 -0.02 1.17 16 28 H -0.01 -0.57 6.44 -2.38 -0.02 -0.59 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.07 2.08 6.24 -2.39 -0.01 2.07 16 31 H 0.06 1.95 6.93 -2.39 -0.02 1.94 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.32 6.35 -2.38 -0.02 1.30 16 34 H 0.06 1.36 4.98 -2.39 -0.01 1.35 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.12 7.69 -2.39 -0.02 1.10 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 1.11 7.69 -2.39 -0.02 1.09 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.07 1.90 6.27 -2.39 -0.01 1.89 16 Total: -1.00 -65.60 321.04 1.18 -64.43 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.89 Total: 14.96 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.70 Total: -28.64 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.98 Total: -86.33 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.33 Total: -10.64 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -65.60 1.18 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.957 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds