Wall clock time and date at job start Mon Mar 30 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 110.99974 * 2 1 4 4 C 1.50694 * 109.47066 * 66.04837 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.46899 * 110.99924 * 236.04865 * 2 1 3 13 13 H 1.09004 * 109.54884 * 63.95120 * 12 2 1 14 14 C 1.53181 * 109.54721 * 184.13341 * 12 2 1 15 15 C 1.53103 * 109.15975 * 176.76004 * 14 12 2 16 16 O 1.42906 * 109.49791 * 302.53566 * 15 14 12 17 17 C 1.42886 * 114.09906 * 61.08438 * 16 15 14 18 18 C 1.52989 * 109.51438 * 58.80431 * 17 16 15 19 19 C 1.52996 * 109.49734 * 60.20363 * 18 17 16 20 20 C 1.53008 * 109.46675 * 59.98859 * 19 18 17 21 21 C 1.53005 * 109.44553 * 299.96084 * 20 19 18 22 22 C 1.52980 * 109.52844 * 178.90861 * 17 16 15 23 23 C 1.53091 * 109.42996 * 298.86146 * 17 16 15 24 24 H 1.09000 * 109.47009 * 60.00040 * 1 2 3 25 25 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46724 * 300.00378 * 1 2 3 27 27 H 1.09007 * 109.47052 * 306.04522 * 3 2 1 28 28 H 1.09003 * 109.46808 * 186.05214 * 3 2 1 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.52132 * 296.76188 * 14 12 2 31 31 H 1.08999 * 109.51564 * 56.94406 * 14 12 2 32 32 H 1.08997 * 109.48106 * 182.50383 * 15 14 12 33 33 H 1.09001 * 109.40172 * 62.52160 * 15 14 12 34 34 H 1.09002 * 109.46556 * 180.21022 * 18 17 16 35 35 H 1.08999 * 109.46584 * 300.19301 * 18 17 16 36 36 H 1.09003 * 109.47146 * 299.99356 * 19 18 17 37 37 H 1.08996 * 109.47384 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47219 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47605 * 59.94906 * 20 19 18 40 40 H 1.08998 * 109.46956 * 300.02626 * 21 20 19 41 41 H 1.09000 * 109.46520 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47251 * 59.79903 * 22 17 16 43 43 H 1.09004 * 109.46732 * 179.78727 * 22 17 16 44 44 H 1.09001 * 109.52400 * 297.71425 * 23 17 16 45 45 H 1.08992 * 109.58105 * 177.55191 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0269 3.3495 1.5285 7 7 2.7120 4.0019 0.6149 8 14 1.5819 4.1872 3.1377 9 1 0.2695 4.8673 2.9954 10 1 1.4986 3.1717 4.2180 11 1 2.6240 5.1887 3.4790 12 6 1.9955 -0.7659 -1.1376 13 1 1.7050 -0.2809 -2.0696 14 6 3.5233 -0.8313 -1.0484 15 6 4.0567 -1.6986 -2.1918 16 8 3.4676 -2.9985 -2.1193 17 6 2.0444 -3.0020 -2.2454 18 6 1.6485 -2.3772 -3.5846 19 6 2.2586 -3.1905 -4.7278 20 6 1.7409 -4.6289 -4.6632 21 6 2.1386 -5.2538 -3.3244 22 6 1.5287 -4.4408 -2.1807 23 6 1.4299 -2.1891 -1.1029 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5611 1.9274 -0.8310 28 1 3.0798 1.3444 -0.1084 29 1 2.9859 4.9183 0.7766 30 1 3.9362 0.1742 -1.1288 31 1 3.8139 -1.2701 -0.0939 32 1 5.1400 -1.7852 -2.1075 33 1 3.8020 -1.2368 -3.1458 34 1 0.5625 -2.3768 -3.6783 35 1 2.0173 -1.3525 -3.6305 36 1 3.3446 -3.1908 -4.6343 37 1 1.9759 -2.7453 -5.6817 38 1 2.1752 -5.2083 -5.4779 39 1 0.6549 -4.6287 -4.7558 40 1 3.2246 -5.2534 -3.2316 41 1 1.7703 -6.2786 -3.2783 42 1 1.8125 -4.8860 -1.2271 43 1 0.4426 -4.4420 -2.2732 44 1 1.6772 -2.6561 -0.1495 45 1 0.3470 -2.1537 -1.2210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:21 Heat of formation + Delta-G solvation = -80.770985 kcal Electronic energy + Delta-G solvation = -22051.808979 eV Core-core repulsion = 19067.435901 eV Total energy + Delta-G solvation = -2984.373078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61933 -38.59547 -36.95975 -34.88776 -33.00092 -32.64446 -31.55053 -29.53762 -27.75080 -27.02468 -24.33022 -24.00188 -23.37991 -22.06754 -20.66257 -20.07999 -18.58860 -17.41627 -16.90070 -16.72384 -16.32790 -15.89190 -15.59580 -15.35997 -15.12969 -14.78450 -14.40657 -14.15012 -14.10466 -13.85485 -13.40757 -13.23238 -13.10575 -13.04122 -12.72739 -12.65076 -12.44342 -12.44010 -12.20573 -12.10020 -11.93283 -11.68806 -11.39924 -11.31176 -11.20232 -11.19342 -10.65477 -10.56254 -10.26676 -9.02165 -8.21976 -6.31786 1.39197 1.40697 1.52460 2.38744 2.83710 3.10363 3.22651 3.65863 3.79898 3.83473 3.94900 4.07972 4.17027 4.26551 4.30403 4.34682 4.43693 4.49196 4.60727 4.63909 4.64208 4.71682 4.73164 4.79587 4.82047 4.89909 5.03059 5.04784 5.11126 5.12275 5.15920 5.20549 5.27166 5.31775 5.32327 5.38776 5.40478 5.48689 5.62088 5.64722 6.05213 6.31550 6.38966 6.64369 6.84386 7.37749 8.89131 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040424 B = 0.004322 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.491591 B = 6477.056435 C = 6674.456557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.206 3.794 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.265 1.265 11 H -0.281 1.281 12 C 0.085 3.915 13 H 0.022 0.978 14 C -0.144 4.144 15 C 0.070 3.930 16 O -0.375 6.375 17 C 0.123 3.877 18 C -0.145 4.145 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.126 4.126 24 H 0.006 0.994 25 H 0.083 0.917 26 H 0.056 0.944 27 H -0.046 1.046 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -17.498 -9.899 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.269 5.269 3 C 0.080 3.920 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.190 1.190 11 H -0.207 1.207 12 C -0.024 4.024 13 H 0.040 0.960 14 C -0.182 4.182 15 C -0.007 4.007 16 O -0.294 6.294 17 C 0.083 3.917 18 C -0.183 4.183 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.164 4.164 24 H 0.024 0.976 25 H 0.102 0.898 26 H 0.075 0.925 27 H -0.028 1.028 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.988 -17.734 -9.472 20.203 hybrid contribution -0.349 1.974 0.104 2.007 sum -2.337 -15.760 -9.368 18.482 Atomic orbital electron populations 1.22247 0.87784 1.01190 0.99711 1.62114 1.07980 1.15194 1.41626 1.19428 0.94361 0.83612 0.94574 1.21486 1.34849 0.97565 1.02420 0.92065 1.25908 0.94982 0.98019 1.00693 1.70086 1.39358 1.11833 1.36214 0.85389 0.77985 0.78103 0.79190 1.19776 1.18965 1.20652 1.21659 0.94936 0.94493 0.91292 0.96030 1.22217 0.95399 1.00131 1.00451 1.22528 0.98470 0.83426 0.96264 1.87892 1.20114 1.27722 1.93662 1.21524 0.80831 0.96451 0.92863 1.22158 1.01779 0.99167 0.95207 1.21442 1.00407 0.95965 0.97233 1.21522 1.01152 0.95087 0.97439 1.21443 1.00839 0.98848 0.93887 1.21539 1.00724 0.91719 0.99874 1.22244 1.00768 0.93584 0.99765 0.97555 0.89837 0.92529 1.02812 0.96769 0.92695 0.92794 0.91858 0.87486 0.92746 0.90434 0.92997 0.92442 0.91518 0.91097 0.91389 0.92422 0.90632 0.91535 0.89419 0.91374 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 8.99 127.69 1.15 2.68 16 2 N -0.55 -24.32 4.62 -900.87 -4.17 -28.48 16 3 C 0.21 11.29 4.54 85.55 0.39 11.68 16 4 C -0.52 -30.44 8.52 25.60 0.22 -30.22 16 5 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 6 C 0.00 0.11 5.46 84.66 0.46 0.57 16 7 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 8 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.08 3.12 1.71 45.04 0.08 3.20 16 13 H 0.02 0.84 6.62 -2.39 -0.02 0.83 16 14 C -0.14 -5.19 5.13 30.69 0.16 -5.03 16 15 C 0.07 1.99 6.51 72.02 0.47 2.46 16 16 O -0.37 -10.43 8.92 -148.98 -1.33 -11.76 16 17 C 0.12 3.04 0.68 -10.77 -0.01 3.04 16 18 C -0.15 -3.34 4.03 30.59 0.12 -3.21 16 19 C -0.11 -2.18 5.78 30.60 0.18 -2.00 16 20 C -0.11 -1.82 5.93 30.60 0.18 -1.64 16 21 C -0.11 -1.95 5.78 30.60 0.18 -1.77 16 22 C -0.10 -2.00 4.94 30.59 0.15 -1.85 16 23 C -0.13 -3.68 3.74 30.69 0.11 -3.57 16 24 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.08 2.66 6.09 -2.39 -0.01 2.65 16 26 H 0.06 2.39 6.86 -2.39 -0.02 2.37 16 27 H -0.05 -2.75 8.12 -2.38 -0.02 -2.76 16 28 H 0.01 0.83 5.91 -2.39 -0.01 0.82 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.05 2.20 6.39 -2.39 -0.02 2.18 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.05 1.48 6.34 -2.39 -0.02 1.47 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.38 4.97 -2.39 -0.01 1.37 16 36 H 0.06 1.22 7.69 -2.39 -0.02 1.20 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.16 7.69 -2.39 -0.02 1.14 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.08 2.14 6.46 -2.39 -0.02 2.12 16 Total: -1.00 -64.81 327.55 1.60 -63.21 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.94 Total: 12.47 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.84 Total: -25.67 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.88 Total: -85.16 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.33 Total: -11.76 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.81 1.60 -63.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.560 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds