Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47216 * 2 1 4 4 C 1.46898 * 111.00087 * 199.78296 * 3 2 1 5 5 C 1.50697 * 109.47352 * 66.04360 * 4 3 2 6 6 H 1.08007 * 120.00167 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00298 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00345 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99917 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47515 * 89.99588 * 9 7 5 11 11 H 1.48503 * 109.47411 * 209.99907 * 9 7 5 12 12 H 1.48505 * 109.47051 * 329.99685 * 9 7 5 13 13 C 1.46896 * 110.99954 * 75.82218 * 3 2 1 14 14 H 1.08999 * 109.63595 * 313.12674 * 13 3 2 15 15 C 1.53180 * 109.55177 * 192.87803 * 13 3 2 16 16 C 1.53085 * 109.24723 * 182.86843 * 15 13 3 17 17 O 1.42967 * 109.39413 * 57.91534 * 16 15 13 18 18 C 1.42539 * 114.12317 * 299.51463 * 17 16 15 19 19 C 1.53987 * 109.85688 * 181.30836 * 18 17 16 20 20 C 1.54957 * 104.13514 * 95.92600 * 19 18 17 21 21 C 1.54924 * 102.78315 * 37.70216 * 20 19 18 22 22 C 1.53618 * 110.02639 * 298.71005 * 18 17 16 23 23 C 1.52767 * 110.34961 * 60.16702 * 18 17 16 24 24 H 1.09006 * 109.47226 * 304.57623 * 1 2 3 25 25 H 1.08996 * 109.47327 * 64.57674 * 1 2 3 26 26 H 1.09000 * 109.47310 * 184.57922 * 1 2 3 27 27 H 1.08993 * 109.47096 * 239.99810 * 2 1 3 28 28 H 1.08998 * 109.46887 * 119.99580 * 2 1 3 29 29 H 1.08998 * 109.46868 * 186.04197 * 4 3 2 30 30 H 1.09000 * 109.47026 * 306.04470 * 4 3 2 31 31 H 0.96995 * 120.00588 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.50824 * 62.93456 * 15 13 3 33 33 H 1.09000 * 109.50884 * 302.80165 * 15 13 3 34 34 H 1.09005 * 109.48083 * 297.94314 * 16 15 13 35 35 H 1.08996 * 109.48640 * 177.89343 * 16 15 13 36 36 H 1.08995 * 110.50123 * 214.59158 * 19 18 17 37 37 H 1.09005 * 110.49499 * 337.27067 * 19 18 17 38 38 H 1.08992 * 110.75007 * 279.37827 * 20 19 18 39 39 H 1.09004 * 110.90500 * 156.09088 * 20 19 18 40 40 H 1.08996 * 110.48405 * 203.52643 * 21 20 19 41 41 H 1.09001 * 110.59826 * 80.93660 * 21 20 19 42 42 H 1.09004 * 110.05294 * 359.92784 * 22 18 17 43 43 H 1.08994 * 110.05012 * 121.41096 * 22 18 17 44 44 H 1.09001 * 109.52591 * 63.19934 * 23 18 17 45 45 H 1.09003 * 109.52028 * 183.38036 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4118 1.4512 -0.4642 5 6 3.4775 1.0477 -1.9146 6 1 2.5752 0.7702 -2.4394 7 6 4.6893 1.0337 -2.5721 8 7 4.7467 0.6810 -3.8379 9 14 6.2498 1.5142 -1.6649 10 1 6.8537 0.3073 -1.0451 11 1 7.2139 2.1143 -2.6217 12 1 5.9224 2.5030 -0.6064 13 6 1.8785 1.9933 1.3296 14 1 0.8819 1.7899 1.7215 15 6 2.0895 3.5069 1.2259 16 6 2.0119 4.1243 2.6246 17 8 2.9964 3.5187 3.4661 18 6 2.8379 2.1114 3.6285 19 6 3.9250 1.5684 4.5743 20 6 3.2345 1.5281 5.9609 21 6 1.7919 1.0835 5.6127 22 6 1.4828 1.8069 4.2849 23 6 2.9312 1.4068 2.2762 24 1 -0.3634 0.5832 0.8462 25 1 -0.3634 0.4412 -0.9281 26 1 -0.3634 -1.0244 0.0820 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7837 2.4697 -0.3532 30 1 4.0254 0.7736 0.1296 31 1 5.5992 0.6708 -4.3004 32 1 1.3146 3.9400 0.5934 33 1 3.0690 3.7091 0.7926 34 1 1.0203 3.9524 3.0434 35 1 2.1987 5.1961 2.5598 36 1 4.2298 0.5670 4.2705 37 1 4.7833 2.2400 4.5948 38 1 3.2336 2.5163 6.4207 39 1 3.7158 0.8002 6.6141 40 1 1.0969 1.4001 6.3904 41 1 1.7457 0.0028 5.4780 42 1 0.9456 2.7349 4.4810 43 1 0.8903 1.1614 3.6367 44 1 3.9249 1.5578 1.8545 45 1 2.7487 0.3402 2.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = -74.102338 kcal Electronic energy + Delta-G solvation = -22378.658513 eV Core-core repulsion = 19394.574609 eV Total energy + Delta-G solvation = -2984.083904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61729 -38.78259 -36.90344 -34.83039 -33.40522 -31.64966 -31.54136 -29.69327 -28.73949 -26.20091 -25.09469 -24.11847 -22.92759 -21.76327 -20.86016 -19.42771 -19.01867 -17.53965 -17.18968 -16.90601 -16.12898 -15.84512 -15.72048 -15.42333 -15.32273 -14.89882 -14.55666 -14.41041 -14.14264 -13.96620 -13.68271 -13.04837 -12.87238 -12.75722 -12.58356 -12.53434 -12.36899 -12.15366 -12.09452 -11.98412 -11.83211 -11.81072 -11.68484 -11.51668 -11.40878 -11.29828 -10.94903 -10.78705 -10.36240 -8.93841 -8.31421 -6.32831 1.27626 1.30263 1.40791 2.29587 2.83128 3.01208 3.18349 3.55400 3.65053 3.81044 3.88893 4.08720 4.18236 4.22331 4.29159 4.35044 4.38939 4.48566 4.56667 4.59507 4.64925 4.66373 4.77018 4.80296 4.83157 4.88809 4.89963 4.99497 5.03216 5.04867 5.07531 5.15231 5.19734 5.24677 5.26753 5.31807 5.37432 5.43833 5.47039 5.57706 6.00924 6.40285 6.43037 6.67154 6.74138 7.30370 8.85301 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.006415 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.512690 B = 4364.015119 C = 4880.701004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.178 3.822 5 C -0.512 4.512 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.257 1.257 13 C 0.084 3.916 14 H 0.096 0.904 15 C -0.147 4.147 16 C 0.065 3.935 17 O -0.389 6.389 18 C 0.118 3.882 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.146 4.146 23 C -0.169 4.169 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.023 0.977 30 H -0.018 1.018 31 H 0.266 0.734 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 2.576 21.264 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.256 5.256 4 C 0.051 3.949 5 C -0.551 4.551 6 H 0.058 0.942 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.762 3.238 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.181 1.181 13 C -0.024 4.024 14 H 0.114 0.886 15 C -0.185 4.185 16 C -0.011 4.011 17 O -0.309 6.309 18 C 0.078 3.922 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.184 4.184 23 C -0.208 4.208 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.000 1.000 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.979 2.917 20.849 22.179 hybrid contribution 1.388 -0.527 -0.392 1.536 sum -5.591 2.390 20.457 21.342 Atomic orbital electron populations 1.21676 0.93542 1.01844 1.01792 1.22013 0.96778 0.89043 0.99799 1.62091 1.21284 1.18481 1.23740 1.19855 0.86492 0.95145 0.93443 1.21302 0.93974 1.44150 0.95630 0.94195 1.25732 1.02280 0.95011 0.95469 1.70032 1.26912 1.50337 1.11384 0.85855 0.79469 0.79479 0.79019 1.19304 1.20394 1.18069 1.21862 0.98652 0.94341 0.87564 0.88632 1.22242 1.02206 0.95369 0.98700 1.22681 0.92752 0.97824 0.87884 1.87873 1.53690 1.20984 1.68317 1.21933 0.96359 0.80827 0.93052 1.22408 0.97249 1.00620 0.95259 1.22475 0.95525 1.01934 0.95420 1.22331 0.96803 1.00190 0.96181 1.22789 0.96171 1.01677 0.97767 1.22829 1.00206 1.00657 0.97115 0.91760 0.93628 0.91071 0.93142 0.94881 0.95866 1.00029 0.92447 0.90048 0.93705 0.91013 0.87517 0.90470 0.91597 0.91247 0.90068 0.90090 0.91097 0.90251 0.91043 0.93678 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 10.08 71.98 0.73 -3.17 16 2 C 0.05 1.95 5.43 86.30 0.47 2.42 16 3 N -0.53 -21.96 4.36 -874.73 -3.81 -25.77 16 4 C 0.18 8.74 2.63 85.56 0.22 8.96 16 5 C -0.51 -30.19 8.78 25.60 0.22 -29.97 16 6 H 0.04 2.61 7.56 -2.91 -0.02 2.59 16 7 C 0.01 0.75 5.47 84.65 0.46 1.21 16 8 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 9 Si 0.94 45.69 27.47 68.60 1.88 47.57 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 13 C 0.08 2.73 1.92 45.06 0.09 2.82 16 14 H 0.10 2.69 5.25 -2.39 -0.01 2.68 16 15 C -0.15 -4.60 5.46 30.68 0.17 -4.43 16 16 C 0.07 1.60 6.53 72.01 0.47 2.07 16 17 O -0.39 -11.05 10.17 -148.98 -1.51 -12.56 16 18 C 0.12 3.04 0.97 -10.33 -0.01 3.03 16 19 C -0.12 -2.73 6.09 31.60 0.19 -2.54 16 20 C -0.12 -2.03 6.91 31.92 0.22 -1.81 16 21 C -0.12 -1.91 6.84 31.71 0.22 -1.70 16 22 C -0.15 -2.94 5.18 31.26 0.16 -2.78 16 23 C -0.17 -5.30 3.14 30.60 0.10 -5.20 16 24 H 0.06 1.65 6.67 -2.38 -0.02 1.63 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 2.29 6.58 -2.39 -0.02 2.28 16 28 H 0.03 1.15 6.45 -2.39 -0.02 1.14 16 29 H 0.02 1.18 5.25 -2.39 -0.01 1.17 16 30 H -0.02 -0.88 6.19 -2.39 -0.01 -0.90 16 31 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.04 1.67 6.38 -2.39 -0.02 1.66 16 34 H 0.07 1.45 6.45 -2.38 -0.02 1.43 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.08 1.76 7.83 -2.39 -0.02 1.74 16 37 H 0.07 1.64 8.06 -2.38 -0.02 1.62 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.49 6.50 -2.38 -0.02 1.48 16 43 H 0.07 1.43 6.62 -2.39 -0.02 1.42 16 44 H 0.04 1.70 6.33 -2.39 -0.02 1.68 16 45 H 0.07 2.18 6.76 -2.39 -0.02 2.17 16 Total: -1.00 -67.51 324.45 1.47 -66.04 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.90 Total: 15.47 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.71 Total: -31.08 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.51 Total: -85.44 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.51 Total: -12.56 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -67.51 1.47 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -67.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds