Wall clock time and date at job start Mon Mar 30 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47319 * 2 1 4 4 C 1.46899 * 111.00216 * 292.13570 * 3 2 1 5 5 C 1.50707 * 109.46668 * 297.26560 * 4 3 2 6 6 H 1.07999 * 120.00075 * 4.61159 * 5 4 3 7 7 C 1.37878 * 119.99418 * 184.61974 * 5 4 3 8 8 N 1.31513 * 119.99659 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00304 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46785 * 90.00729 * 9 7 5 11 11 H 1.48498 * 109.47035 * 210.00242 * 9 7 5 12 12 H 1.48496 * 109.47133 * 330.00591 * 9 7 5 13 13 C 1.46901 * 110.99929 * 168.17778 * 3 2 1 14 14 H 1.08997 * 109.54554 * 63.76493 * 13 3 2 15 15 C 1.53180 * 109.54958 * 183.95578 * 13 3 2 16 16 C 1.53081 * 109.23975 * 177.14732 * 15 13 3 17 17 O 1.42970 * 109.39129 * 302.07721 * 16 15 13 18 18 C 1.42533 * 114.13765 * 60.48137 * 17 16 15 19 19 C 1.53999 * 109.80373 * 60.93074 * 18 17 16 20 20 C 1.54948 * 104.12889 * 95.89107 * 19 18 17 21 21 C 1.54913 * 102.78279 * 37.71854 * 20 19 18 22 22 C 1.53593 * 110.05846 * 178.31483 * 18 17 16 23 23 C 1.52771 * 110.35693 * 299.86038 * 18 17 16 24 24 H 1.08999 * 109.47264 * 178.62668 * 1 2 3 25 25 H 1.08996 * 109.46943 * 298.62647 * 1 2 3 26 26 H 1.09000 * 109.46824 * 58.62086 * 1 2 3 27 27 H 1.08997 * 109.46941 * 239.99956 * 2 1 3 28 28 H 1.08998 * 109.47042 * 120.00222 * 2 1 3 29 29 H 1.08998 * 109.47057 * 57.25649 * 4 3 2 30 30 H 1.08993 * 109.47550 * 177.26357 * 4 3 2 31 31 H 0.97001 * 119.99970 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.50935 * 297.07539 * 15 13 3 33 33 H 1.09002 * 109.50672 * 57.21355 * 15 13 3 34 34 H 1.08999 * 109.48048 * 62.04859 * 16 15 13 35 35 H 1.08999 * 109.48160 * 182.09829 * 16 15 13 36 36 H 1.09000 * 110.50081 * 214.55090 * 19 18 17 37 37 H 1.08997 * 110.49645 * 337.22857 * 19 18 17 38 38 H 1.09009 * 110.75165 * 279.40222 * 20 19 18 39 39 H 1.08998 * 110.91504 * 156.11914 * 20 19 18 40 40 H 1.08993 * 110.48734 * 203.53550 * 21 20 19 41 41 H 1.09005 * 110.48037 * 80.89617 * 21 20 19 42 42 H 1.08999 * 110.05304 * 0.02562 * 22 18 17 43 43 H 1.09001 * 110.05480 * 121.50753 * 22 18 17 44 44 H 1.08994 * 109.52317 * 296.77057 * 23 18 17 45 45 H 1.08997 * 109.57045 * 176.61254 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.7081 2.0536 -1.2703 5 6 2.4191 1.3486 -2.3967 6 1 2.9797 0.4465 -2.2007 7 6 2.3539 1.8553 -3.6773 8 7 2.9739 1.2398 -4.6603 9 14 1.3838 3.4153 -4.0163 10 1 2.2731 4.5946 -3.8615 11 1 0.8511 3.3756 -5.4018 12 1 0.2564 3.5158 -3.0551 13 6 3.4608 1.4338 0.2810 14 1 4.0054 0.9302 -0.5177 15 6 3.9164 2.8935 0.3708 16 6 5.4029 2.9366 0.7339 17 8 5.6094 2.2507 1.9711 18 6 5.2322 0.8764 1.9457 19 6 6.0691 0.1251 0.8937 20 6 7.2336 -0.4930 1.7078 21 6 6.5436 -0.9100 3.0306 22 6 5.5312 0.2228 3.3030 23 6 3.7467 0.7390 1.6166 24 1 -0.3634 -1.0273 -0.0246 25 1 -0.3633 0.4923 0.9020 26 1 -0.3633 0.5351 -0.8774 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.6324 2.0217 -1.4433 30 1 2.0383 3.0914 -1.2253 31 1 2.9284 1.5965 -5.5612 32 1 3.7623 3.3828 -0.5910 33 1 3.3389 3.4085 1.1386 34 1 5.9831 2.4523 -0.0515 35 1 5.7224 3.9738 0.8354 36 1 5.4755 -0.6580 0.4218 37 1 6.4525 0.8182 0.1450 38 1 8.0105 0.2485 1.8946 39 1 7.6468 -1.3627 1.1970 40 1 7.2729 -0.9723 3.8381 41 1 6.0269 -1.8619 2.9077 42 1 5.9648 0.9557 3.9834 43 1 4.6163 -0.1883 3.7296 44 1 3.1546 1.2054 2.4038 45 1 3.4855 -0.3165 1.5412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:07 Heat of formation + Delta-G solvation = -54.602475 kcal Electronic energy + Delta-G solvation = -22419.564851 eV Core-core repulsion = 19436.326524 eV Total energy + Delta-G solvation = -2983.238326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21991 -37.28480 -35.72573 -32.65444 -32.07106 -30.54493 -29.39377 -28.59675 -27.10363 -24.90250 -23.67074 -22.38124 -21.28261 -20.37282 -19.26872 -18.56991 -16.87010 -16.21883 -15.89558 -15.29032 -14.76449 -14.55875 -14.20112 -13.97972 -13.88018 -13.15515 -13.03025 -12.88507 -12.57868 -12.16591 -11.85260 -11.79727 -11.40516 -11.27442 -11.14990 -11.09141 -11.04881 -10.77500 -10.67158 -10.57770 -10.48321 -10.43442 -10.22438 -9.97080 -9.68385 -9.61633 -9.41300 -9.01312 -8.60196 -7.15763 -6.12817 -4.11623 3.24375 3.32984 3.36991 4.01875 4.37130 4.63011 4.71117 4.84640 5.02328 5.20218 5.25863 5.38433 5.46481 5.49423 5.61649 5.68022 5.72283 5.82391 5.83401 5.89429 5.91405 5.94412 5.97723 6.07193 6.09911 6.11979 6.25206 6.26032 6.35950 6.40672 6.42709 6.50459 6.56138 6.72380 6.77151 6.83991 6.95700 6.97138 7.15533 7.57061 7.64122 8.08037 8.15760 8.43455 8.89618 9.50696 11.00137 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.006189 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.197917 B = 4523.106051 C = 4872.708241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 N -0.530 5.530 4 C 0.150 3.850 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.092 3.908 14 H 0.057 0.943 15 C -0.143 4.143 16 C 0.060 3.940 17 O -0.376 6.376 18 C 0.120 3.880 19 C -0.152 4.152 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.133 4.133 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -1.674 13.465 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.254 5.254 4 C 0.023 3.977 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.189 1.189 13 C -0.017 4.017 14 H 0.075 0.925 15 C -0.181 4.181 16 C -0.017 4.017 17 O -0.296 6.296 18 C 0.080 3.920 19 C -0.189 4.189 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.171 4.171 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.387 -1.324 13.811 14.551 hybrid contribution -0.235 0.302 -1.480 1.529 sum 4.152 -1.023 12.331 13.051 Atomic orbital electron populations 1.21705 0.96160 1.00160 1.01825 1.21976 0.95162 0.90733 1.00027 1.62505 1.12920 1.15272 1.34668 1.20233 0.96709 0.94640 0.86132 1.21643 1.32525 1.12058 0.92206 0.90865 1.24946 0.94903 0.96945 0.96185 1.69925 1.43173 1.40010 1.00662 0.86856 0.81196 0.84033 0.77711 1.20202 1.21334 1.18869 1.21414 0.90195 0.95040 0.95005 0.92542 1.22174 0.95463 0.97764 1.02721 1.22632 0.96010 0.96573 0.86460 1.87832 1.85346 1.22024 1.34367 1.21832 0.93297 0.82035 0.94873 1.23012 0.97272 1.00377 0.98263 1.22463 0.97629 1.00094 0.95708 1.22366 0.97885 0.98138 0.97632 1.22117 0.99514 0.97206 0.95925 1.22344 0.95041 1.00966 0.98779 0.93604 0.93240 0.92251 0.93510 0.92618 0.95253 0.95587 0.92734 0.90146 0.91407 0.92869 0.89361 0.90686 0.90614 0.91537 0.91790 0.91746 0.91639 0.90671 0.90941 0.91095 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C 0.05 0.94 5.29 -3.82 -0.02 0.92 16 3 N -0.53 -10.84 4.57 -227.82 -1.04 -11.88 16 4 C 0.15 3.52 3.66 -4.97 -0.02 3.50 16 5 C -0.55 -14.76 8.04 -34.44 -0.28 -15.03 16 6 H 0.07 2.17 6.12 -52.49 -0.32 1.84 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.87 21.20 27.38 -169.99 -4.65 16.54 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.20 6.68 56.52 0.38 -5.82 16 13 C 0.09 1.74 1.50 -67.50 -0.10 1.64 16 14 H 0.06 1.23 5.95 -51.93 -0.31 0.92 16 15 C -0.14 -2.57 5.08 -26.60 -0.14 -2.71 16 16 C 0.06 0.95 6.58 37.20 0.24 1.19 16 17 O -0.38 -6.00 10.15 -35.23 -0.36 -6.36 16 18 C 0.12 1.75 0.98 -89.91 -0.09 1.66 16 19 C -0.15 -2.19 4.92 -25.18 -0.12 -2.31 16 20 C -0.12 -1.44 6.91 -24.69 -0.17 -1.61 16 21 C -0.12 -1.32 6.84 -25.02 -0.17 -1.49 16 22 C -0.11 -1.34 6.27 -25.72 -0.16 -1.50 16 23 C -0.13 -2.12 3.38 -26.72 -0.09 -2.21 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.13 6.50 -51.93 -0.34 0.80 16 27 H 0.05 1.02 6.35 -51.93 -0.33 0.69 16 28 H 0.06 0.94 5.72 -51.93 -0.30 0.65 16 29 H 0.03 0.71 5.77 -51.93 -0.30 0.41 16 30 H 0.03 0.62 5.49 -51.93 -0.28 0.33 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.59 6.55 -51.93 -0.34 1.25 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.86 6.06 -51.93 -0.31 0.54 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.13 7.74 -51.93 -0.40 0.73 16 37 H 0.08 1.17 5.82 -51.93 -0.30 0.87 16 38 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.92 7.95 -51.93 -0.41 0.50 16 43 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.06 6.26 -51.93 -0.33 0.73 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -28.98 323.31 -8.89 -37.86 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.64 Total: 3.23 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.84 Total: -18.09 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.27 Total: -38.06 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.65 Total: 16.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.98 -8.89 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.739 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds