Wall clock time and date at job start Mon Mar 30 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47319 * 2 1 4 4 C 1.46899 * 111.00216 * 292.13570 * 3 2 1 5 5 C 1.50707 * 109.46668 * 297.26560 * 4 3 2 6 6 H 1.07999 * 120.00075 * 4.61159 * 5 4 3 7 7 C 1.37878 * 119.99418 * 184.61974 * 5 4 3 8 8 N 1.31513 * 119.99659 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00304 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46785 * 90.00729 * 9 7 5 11 11 H 1.48498 * 109.47035 * 210.00242 * 9 7 5 12 12 H 1.48496 * 109.47133 * 330.00591 * 9 7 5 13 13 C 1.46901 * 110.99929 * 168.17778 * 3 2 1 14 14 H 1.08997 * 109.54554 * 63.76493 * 13 3 2 15 15 C 1.53180 * 109.54958 * 183.95578 * 13 3 2 16 16 C 1.53081 * 109.23975 * 177.14732 * 15 13 3 17 17 O 1.42970 * 109.39129 * 302.07721 * 16 15 13 18 18 C 1.42533 * 114.13765 * 60.48137 * 17 16 15 19 19 C 1.53999 * 109.80373 * 60.93074 * 18 17 16 20 20 C 1.54948 * 104.12889 * 95.89107 * 19 18 17 21 21 C 1.54913 * 102.78279 * 37.71854 * 20 19 18 22 22 C 1.53593 * 110.05846 * 178.31483 * 18 17 16 23 23 C 1.52771 * 110.35693 * 299.86038 * 18 17 16 24 24 H 1.08999 * 109.47264 * 178.62668 * 1 2 3 25 25 H 1.08996 * 109.46943 * 298.62647 * 1 2 3 26 26 H 1.09000 * 109.46824 * 58.62086 * 1 2 3 27 27 H 1.08997 * 109.46941 * 239.99956 * 2 1 3 28 28 H 1.08998 * 109.47042 * 120.00222 * 2 1 3 29 29 H 1.08998 * 109.47057 * 57.25649 * 4 3 2 30 30 H 1.08993 * 109.47550 * 177.26357 * 4 3 2 31 31 H 0.97001 * 119.99970 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.50935 * 297.07539 * 15 13 3 33 33 H 1.09002 * 109.50672 * 57.21355 * 15 13 3 34 34 H 1.08999 * 109.48048 * 62.04859 * 16 15 13 35 35 H 1.08999 * 109.48160 * 182.09829 * 16 15 13 36 36 H 1.09000 * 110.50081 * 214.55090 * 19 18 17 37 37 H 1.08997 * 110.49645 * 337.22857 * 19 18 17 38 38 H 1.09009 * 110.75165 * 279.40222 * 20 19 18 39 39 H 1.08998 * 110.91504 * 156.11914 * 20 19 18 40 40 H 1.08993 * 110.48734 * 203.53550 * 21 20 19 41 41 H 1.09005 * 110.48037 * 80.89617 * 21 20 19 42 42 H 1.08999 * 110.05304 * 0.02562 * 22 18 17 43 43 H 1.09001 * 110.05480 * 121.50753 * 22 18 17 44 44 H 1.08994 * 109.52317 * 296.77057 * 23 18 17 45 45 H 1.08997 * 109.57045 * 176.61254 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.7081 2.0536 -1.2703 5 6 2.4191 1.3486 -2.3967 6 1 2.9797 0.4465 -2.2007 7 6 2.3539 1.8553 -3.6773 8 7 2.9739 1.2398 -4.6603 9 14 1.3838 3.4153 -4.0163 10 1 2.2731 4.5946 -3.8615 11 1 0.8511 3.3756 -5.4018 12 1 0.2564 3.5158 -3.0551 13 6 3.4608 1.4338 0.2810 14 1 4.0054 0.9302 -0.5177 15 6 3.9164 2.8935 0.3708 16 6 5.4029 2.9366 0.7339 17 8 5.6094 2.2507 1.9711 18 6 5.2322 0.8764 1.9457 19 6 6.0691 0.1251 0.8937 20 6 7.2336 -0.4930 1.7078 21 6 6.5436 -0.9100 3.0306 22 6 5.5312 0.2228 3.3030 23 6 3.7467 0.7390 1.6166 24 1 -0.3634 -1.0273 -0.0246 25 1 -0.3633 0.4923 0.9020 26 1 -0.3633 0.5351 -0.8774 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.6324 2.0217 -1.4433 30 1 2.0383 3.0914 -1.2253 31 1 2.9284 1.5965 -5.5612 32 1 3.7623 3.3828 -0.5910 33 1 3.3389 3.4085 1.1386 34 1 5.9831 2.4523 -0.0515 35 1 5.7224 3.9738 0.8354 36 1 5.4755 -0.6580 0.4218 37 1 6.4525 0.8182 0.1450 38 1 8.0105 0.2485 1.8946 39 1 7.6468 -1.3627 1.1970 40 1 7.2729 -0.9723 3.8381 41 1 6.0269 -1.8619 2.9077 42 1 5.9648 0.9557 3.9834 43 1 4.6163 -0.1883 3.7296 44 1 3.1546 1.2054 2.4038 45 1 3.4855 -0.3165 1.5412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:06 Heat of formation + Delta-G solvation = -72.788902 kcal Electronic energy + Delta-G solvation = -22420.353473 eV Core-core repulsion = 19436.326524 eV Total energy + Delta-G solvation = -2984.026949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50276 -38.83601 -36.88872 -34.71402 -33.58852 -31.89892 -30.98622 -29.65659 -28.80032 -26.31457 -25.11110 -24.10960 -22.59597 -21.54468 -20.77147 -20.03107 -18.81254 -17.48164 -17.30036 -16.60696 -16.46113 -16.12608 -15.76763 -15.36924 -15.18113 -14.62893 -14.44888 -14.36421 -13.98697 -13.69783 -13.44871 -13.40730 -12.79305 -12.77110 -12.58357 -12.37082 -12.27212 -12.22775 -12.11627 -12.01510 -11.89666 -11.75527 -11.69679 -11.57807 -11.42841 -11.04022 -10.95401 -10.77311 -10.32479 -8.95192 -8.32238 -6.35375 1.31550 1.33686 1.45110 2.31438 2.81644 3.03379 3.20275 3.61450 3.67539 3.89106 3.97951 4.10703 4.19582 4.25297 4.32797 4.45587 4.52677 4.53680 4.57040 4.63165 4.67430 4.74891 4.81172 4.82436 4.88496 4.93100 4.98194 5.02717 5.07499 5.11474 5.14395 5.18245 5.20793 5.23519 5.26550 5.34436 5.41407 5.46210 5.48127 5.57199 6.11757 6.35775 6.39823 6.48560 6.70614 7.30664 8.84052 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.006189 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.197917 B = 4523.106051 C = 4872.708241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 N -0.525 5.525 4 C 0.159 3.841 5 C -0.538 4.538 6 H 0.033 0.967 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.940 3.060 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.092 3.908 14 H 0.018 0.982 15 C -0.140 4.140 16 C 0.065 3.935 17 O -0.378 6.378 18 C 0.115 3.885 19 C -0.156 4.156 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.107 4.107 23 C -0.123 4.123 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.009 0.991 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -1.058 15.978 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 N -0.248 5.248 4 C 0.031 3.969 5 C -0.577 4.577 6 H 0.051 0.949 7 C -0.185 4.185 8 N -0.588 5.588 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.017 4.017 14 H 0.036 0.964 15 C -0.178 4.178 16 C -0.012 4.012 17 O -0.297 6.297 18 C 0.076 3.924 19 C -0.193 4.193 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.161 4.161 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.945 -0.715 16.352 16.836 hybrid contribution -0.052 0.014 -2.261 2.261 sum 3.893 -0.701 14.091 14.636 Atomic orbital electron populations 1.21665 0.94360 1.01606 1.01599 1.22054 0.96682 0.89755 0.99448 1.62574 1.13924 1.15909 1.32348 1.20056 0.95972 0.94599 0.86237 1.21809 1.31622 1.10681 0.93548 0.94920 1.25831 0.96131 1.00542 0.95947 1.70074 1.45324 1.42174 1.01220 0.85807 0.80178 0.79807 0.77807 1.19131 1.21100 1.17146 1.21438 0.88740 0.95882 0.95600 0.96430 1.22135 0.97231 0.96726 1.01713 1.22608 0.94275 0.97902 0.86430 1.87838 1.85244 1.22626 1.34028 1.22012 0.92153 0.81711 0.96557 1.22993 0.98331 0.99748 0.98257 1.22462 0.96668 1.00318 0.96107 1.22371 0.97882 0.97817 0.97320 1.22141 1.00624 0.97562 0.94087 1.22271 0.96371 1.00756 0.96691 0.91344 0.91416 0.94441 0.97275 0.90039 0.95299 0.95295 0.92658 0.92439 0.90608 0.93909 0.86983 0.92220 0.92558 0.91287 0.90919 0.89588 0.90857 0.90200 0.89694 0.90485 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.91 71.98 0.71 -3.77 16 2 C 0.05 1.85 5.29 86.31 0.46 2.31 16 3 N -0.52 -21.45 4.57 -874.69 -3.99 -25.44 16 4 C 0.16 7.53 3.66 85.56 0.31 7.84 16 5 C -0.54 -30.26 8.04 25.60 0.21 -30.06 16 6 H 0.03 2.07 6.12 -2.91 -0.02 2.05 16 7 C 0.01 0.77 5.47 84.66 0.46 1.23 16 8 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 9 Si 0.94 44.00 27.38 68.60 1.88 45.88 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.25 -10.87 6.68 99.48 0.66 -10.21 16 13 C 0.09 3.54 1.50 45.06 0.07 3.61 16 14 H 0.02 0.82 5.95 -2.39 -0.01 0.81 16 15 C -0.14 -5.02 5.08 30.68 0.16 -4.86 16 16 C 0.06 2.01 6.58 72.01 0.47 2.49 16 17 O -0.38 -11.52 10.15 -148.98 -1.51 -13.03 16 18 C 0.12 3.23 0.98 -10.33 -0.01 3.22 16 19 C -0.16 -4.52 4.92 31.60 0.16 -4.36 16 20 C -0.12 -2.63 6.91 31.91 0.22 -2.41 16 21 C -0.12 -2.16 6.84 31.70 0.22 -1.95 16 22 C -0.11 -2.30 6.27 31.25 0.20 -2.11 16 23 C -0.12 -3.79 3.38 30.60 0.10 -3.69 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.39 6.50 -2.39 -0.02 1.38 16 27 H 0.01 0.41 6.35 -2.39 -0.02 0.39 16 28 H 0.08 2.67 5.72 -2.39 -0.01 2.65 16 29 H 0.03 1.39 5.77 -2.39 -0.01 1.37 16 30 H 0.03 1.37 5.49 -2.39 -0.01 1.35 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.06 2.30 6.55 -2.39 -0.02 2.29 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.04 1.42 6.06 -2.39 -0.01 1.41 16 35 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16 36 H 0.06 1.88 7.74 -2.39 -0.02 1.86 16 37 H 0.06 1.83 5.82 -2.39 -0.01 1.81 16 38 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.08 1.68 7.95 -2.39 -0.02 1.67 16 43 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.18 6.26 -2.39 -0.01 2.16 16 Total: -1.00 -64.38 323.31 1.32 -63.07 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.91 Total: 20.67 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 3.73 Total: -32.50 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.70 Total: -84.09 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.51 Total: -13.03 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -64.38 1.32 -63.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.721 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds