Wall clock time and date at job start Mon Mar 30 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47246 * 2 1 4 4 C 1.36937 * 120.00050 * 95.49213 * 3 2 1 5 5 H 1.08001 * 120.00248 * 213.87686 * 4 3 2 6 6 C 1.38810 * 119.99923 * 33.88517 * 4 3 2 7 7 N 1.31628 * 120.00111 * 21.94123 * 6 4 3 8 8 Si 1.86802 * 120.00115 * 201.94228 * 6 4 3 9 9 H 1.48498 * 109.47038 * 59.99612 * 8 6 4 10 10 H 1.48498 * 109.47342 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47048 * 299.99830 * 8 6 4 12 12 C 1.46498 * 120.00212 * 275.49355 * 3 2 1 13 13 H 1.09003 * 109.54180 * 0.02562 * 12 3 2 14 14 C 1.53177 * 109.55026 * 239.81942 * 12 3 2 15 15 C 1.53089 * 109.15373 * 183.12450 * 14 12 3 16 16 O 1.42899 * 109.42622 * 57.62076 * 15 14 12 17 17 C 1.42887 * 114.12030 * 298.87996 * 16 15 14 18 18 C 1.52982 * 109.52134 * 301.12103 * 17 16 15 19 19 C 1.52993 * 109.50336 * 299.79024 * 18 17 16 20 20 C 1.53013 * 109.47328 * 300.02332 * 19 18 17 21 21 C 1.52997 * 109.44263 * 60.03245 * 20 19 18 22 22 C 1.52985 * 109.52129 * 181.02017 * 17 16 15 23 23 C 1.53104 * 109.50890 * 61.03340 * 17 16 15 24 24 H 1.08993 * 109.47270 * 299.99691 * 1 2 3 25 25 H 1.09000 * 109.47220 * 60.00516 * 1 2 3 26 26 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47071 * 120.00256 * 2 1 3 28 28 H 1.09005 * 109.47416 * 239.99677 * 2 1 3 29 29 H 0.96999 * 119.99516 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.52251 * 303.02986 * 14 12 3 31 31 H 1.09004 * 109.52574 * 63.15024 * 14 12 3 32 32 H 1.09004 * 109.47900 * 177.60854 * 15 14 12 33 33 H 1.09008 * 109.47766 * 297.62997 * 15 14 12 34 34 H 1.09002 * 109.47070 * 59.80317 * 18 17 16 35 35 H 1.09001 * 109.46783 * 179.78417 * 18 17 16 36 36 H 1.08998 * 109.47616 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47729 * 60.01989 * 19 18 17 38 38 H 1.09002 * 109.47418 * 300.04855 * 20 19 18 39 39 H 1.08990 * 109.48229 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47047 * 179.97438 * 21 20 19 41 41 H 1.09010 * 109.46633 * 59.97105 * 21 20 19 42 42 H 1.08994 * 109.46696 * 180.22375 * 22 17 16 43 43 H 1.08998 * 109.46511 * 300.20914 * 22 17 16 44 44 H 1.09002 * 109.59857 * 182.62068 * 23 17 16 45 45 H 1.09011 * 109.44345 * 62.44089 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3536 1.9888 1.1805 5 1 2.1857 3.0479 1.3094 6 6 2.9094 1.2437 2.2113 7 7 3.5082 0.1012 1.9489 8 14 2.8077 1.8622 3.9710 9 1 1.3828 2.0092 4.3624 10 1 3.4726 0.8910 4.8764 11 1 3.4874 3.1787 4.0731 12 6 2.1480 2.1123 -1.2629 13 1 1.8370 1.4721 -2.0884 14 6 3.6067 2.5350 -1.4630 15 6 3.7179 3.3645 -2.7448 16 8 2.8501 4.4962 -2.6553 17 6 1.4679 4.1625 -2.5138 18 6 1.0207 3.3190 -3.7091 19 6 1.2175 4.1170 -4.9995 20 6 0.3837 5.3986 -4.9390 21 6 0.8328 6.2424 -3.7444 22 6 0.6359 5.4449 -2.4537 23 6 1.2645 3.3629 -1.2240 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.8969 -0.4192 2.6693 30 1 3.9325 3.1335 -0.6122 31 1 4.2349 1.6480 -1.5461 32 1 4.7461 3.7039 -2.8701 33 1 3.4303 2.7526 -3.5999 34 1 1.6148 2.4062 -3.7523 35 1 -0.0327 3.0617 -3.5983 36 1 0.8983 3.5158 -5.8509 37 1 2.2709 4.3740 -5.1108 38 1 -0.6697 5.1418 -4.8269 39 1 0.5234 5.9669 -5.8584 40 1 0.2394 7.1557 -3.7011 41 1 1.8865 6.4985 -3.8562 42 1 -0.4177 5.1894 -2.3417 43 1 0.9563 6.0462 -1.6028 44 1 0.2188 3.0677 -1.1380 45 1 1.5418 3.9783 -0.3680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:48 Heat of formation + Delta-G solvation = -51.239703 kcal Electronic energy + Delta-G solvation = -22574.865110 eV Core-core repulsion = 19591.772604 eV Total energy + Delta-G solvation = -2983.092505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.11492 -36.61902 -35.46205 -32.38599 -31.30250 -31.04787 -30.44642 -28.43515 -26.42123 -24.42766 -22.89284 -22.63121 -21.80905 -20.40517 -19.53227 -18.70059 -16.37714 -15.87596 -15.45722 -14.75058 -14.65791 -14.37856 -14.07957 -13.83390 -13.48842 -13.18038 -13.03257 -12.60550 -12.27519 -12.06218 -11.98508 -11.77008 -11.55506 -11.39034 -11.13194 -10.86272 -10.85263 -10.71928 -10.67285 -10.44485 -10.37306 -10.18921 -10.05277 -9.94516 -9.76602 -9.52480 -9.09343 -8.77363 -8.39918 -6.54454 -5.74120 -3.26534 3.39546 3.45225 3.47686 4.21130 4.51300 4.86044 4.91569 4.99432 5.26113 5.35396 5.37554 5.44598 5.54730 5.59599 5.67547 5.70067 5.79097 5.85705 5.93051 6.02998 6.05823 6.10517 6.15554 6.17482 6.30729 6.32442 6.34293 6.37297 6.41700 6.54907 6.55820 6.63872 6.65657 6.80595 6.86061 6.90962 7.13633 7.29935 7.30877 7.78785 7.80963 7.87119 8.55838 9.25105 9.89100 10.45131 11.27025 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.005864 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.604432 B = 4773.474291 C = 4966.335251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 N -0.580 5.580 4 C -0.247 4.247 5 H 0.061 0.939 6 C 0.007 3.993 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.178 3.822 13 H 0.047 0.953 14 C -0.156 4.156 15 C 0.061 3.939 16 O -0.374 6.374 17 C 0.124 3.876 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.102 4.102 23 C -0.146 4.146 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.016 0.984 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 6.710 -11.967 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.299 5.299 4 C -0.377 4.377 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.070 3.930 13 H 0.065 0.935 14 C -0.196 4.196 15 C -0.016 4.016 16 O -0.293 6.293 17 C 0.084 3.916 18 C -0.182 4.182 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.186 4.186 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.690 6.750 -11.843 14.416 hybrid contribution -0.105 -0.117 1.052 1.063 sum -4.795 6.633 -10.792 13.544 Atomic orbital electron populations 1.22355 1.01119 0.98563 1.00258 1.20957 0.89578 0.86514 1.01671 1.43923 1.73768 1.11174 1.01066 1.18936 1.34467 0.94029 0.90282 0.92134 1.25056 0.97217 0.97941 0.99012 1.69984 1.36693 1.15652 1.31113 0.86496 0.77813 0.78056 0.85217 1.21074 1.21720 1.20847 1.20357 0.91829 0.91509 0.89291 0.93505 1.22573 0.99955 0.99795 0.97244 1.22604 0.93362 0.88257 0.97393 1.87845 1.16069 1.31443 1.93948 1.21409 0.82067 0.94170 0.93940 1.22150 1.01805 0.99107 0.95104 1.21453 1.00674 0.96128 0.96962 1.21515 0.99420 0.96492 0.97981 1.21461 1.01910 0.97503 0.94407 1.21506 0.98853 0.95529 0.98113 1.22611 1.00629 0.98748 0.96600 0.93341 0.95021 0.94857 0.88287 0.96514 0.93672 0.90651 0.91841 0.90136 0.94023 0.91231 0.91491 0.92716 0.91589 0.92471 0.92579 0.92684 0.91221 0.91173 0.91415 0.92168 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.23 37.16 0.38 -2.94 16 2 C 0.14 3.27 5.90 -4.05 -0.02 3.25 16 3 N -0.58 -14.05 2.40 -165.46 -0.40 -14.45 16 4 C -0.25 -6.60 8.20 -15.06 -0.12 -6.72 16 5 H 0.06 1.64 6.77 -52.49 -0.36 1.28 16 6 C 0.01 0.19 4.93 -17.43 -0.09 0.11 16 7 N -0.89 -25.41 11.32 55.49 0.63 -24.78 16 8 Si 0.89 21.66 29.61 -169.99 -5.03 16.63 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.18 3.65 2.41 -67.75 -0.16 3.49 16 13 H 0.05 0.93 6.36 -51.93 -0.33 0.60 16 14 C -0.16 -3.13 5.44 -26.59 -0.14 -3.27 16 15 C 0.06 1.00 6.51 37.20 0.24 1.24 16 16 O -0.37 -6.31 8.92 -35.23 -0.31 -6.63 16 17 C 0.12 1.93 0.68 -90.58 -0.06 1.87 16 18 C -0.14 -2.00 4.03 -26.74 -0.11 -2.10 16 19 C -0.11 -1.38 5.78 -26.73 -0.15 -1.53 16 20 C -0.12 -1.28 5.93 -26.73 -0.16 -1.44 16 21 C -0.12 -1.38 5.78 -26.73 -0.15 -1.53 16 22 C -0.10 -1.41 4.94 -26.74 -0.13 -1.54 16 23 C -0.15 -2.72 4.21 -26.59 -0.11 -2.83 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.10 2.65 5.33 -51.93 -0.28 2.37 16 28 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.71 7.57 -51.93 -0.39 1.32 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.63 6.35 -51.92 -0.33 0.30 16 34 H 0.07 1.02 4.98 -51.93 -0.26 0.76 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.91 7.69 -51.92 -0.40 0.51 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.50 6.86 -51.92 -0.36 1.14 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -27.85 330.32 -9.08 -36.93 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.15 Total: 1.28 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -0.80 Total: -13.96 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.23 Total: -39.23 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.31 Total: -6.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.85 -9.08 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.307 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds