Wall clock time and date at job start Mon Mar 30 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47246 * 2 1 4 4 C 1.36937 * 120.00050 * 95.49213 * 3 2 1 5 5 H 1.08001 * 120.00248 * 213.87686 * 4 3 2 6 6 C 1.38810 * 119.99923 * 33.88517 * 4 3 2 7 7 N 1.31628 * 120.00111 * 21.94123 * 6 4 3 8 8 Si 1.86802 * 120.00115 * 201.94228 * 6 4 3 9 9 H 1.48498 * 109.47038 * 59.99612 * 8 6 4 10 10 H 1.48498 * 109.47342 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47048 * 299.99830 * 8 6 4 12 12 C 1.46498 * 120.00212 * 275.49355 * 3 2 1 13 13 H 1.09003 * 109.54180 * 0.02562 * 12 3 2 14 14 C 1.53177 * 109.55026 * 239.81942 * 12 3 2 15 15 C 1.53089 * 109.15373 * 183.12450 * 14 12 3 16 16 O 1.42899 * 109.42622 * 57.62076 * 15 14 12 17 17 C 1.42887 * 114.12030 * 298.87996 * 16 15 14 18 18 C 1.52982 * 109.52134 * 301.12103 * 17 16 15 19 19 C 1.52993 * 109.50336 * 299.79024 * 18 17 16 20 20 C 1.53013 * 109.47328 * 300.02332 * 19 18 17 21 21 C 1.52997 * 109.44263 * 60.03245 * 20 19 18 22 22 C 1.52985 * 109.52129 * 181.02017 * 17 16 15 23 23 C 1.53104 * 109.50890 * 61.03340 * 17 16 15 24 24 H 1.08993 * 109.47270 * 299.99691 * 1 2 3 25 25 H 1.09000 * 109.47220 * 60.00516 * 1 2 3 26 26 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47071 * 120.00256 * 2 1 3 28 28 H 1.09005 * 109.47416 * 239.99677 * 2 1 3 29 29 H 0.96999 * 119.99516 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.52251 * 303.02986 * 14 12 3 31 31 H 1.09004 * 109.52574 * 63.15024 * 14 12 3 32 32 H 1.09004 * 109.47900 * 177.60854 * 15 14 12 33 33 H 1.09008 * 109.47766 * 297.62997 * 15 14 12 34 34 H 1.09002 * 109.47070 * 59.80317 * 18 17 16 35 35 H 1.09001 * 109.46783 * 179.78417 * 18 17 16 36 36 H 1.08998 * 109.47616 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47729 * 60.01989 * 19 18 17 38 38 H 1.09002 * 109.47418 * 300.04855 * 20 19 18 39 39 H 1.08990 * 109.48229 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47047 * 179.97438 * 21 20 19 41 41 H 1.09010 * 109.46633 * 59.97105 * 21 20 19 42 42 H 1.08994 * 109.46696 * 180.22375 * 22 17 16 43 43 H 1.08998 * 109.46511 * 300.20914 * 22 17 16 44 44 H 1.09002 * 109.59857 * 182.62068 * 23 17 16 45 45 H 1.09011 * 109.44345 * 62.44089 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3536 1.9888 1.1805 5 1 2.1857 3.0479 1.3094 6 6 2.9094 1.2437 2.2113 7 7 3.5082 0.1012 1.9489 8 14 2.8077 1.8622 3.9710 9 1 1.3828 2.0092 4.3624 10 1 3.4726 0.8910 4.8764 11 1 3.4874 3.1787 4.0731 12 6 2.1480 2.1123 -1.2629 13 1 1.8370 1.4721 -2.0884 14 6 3.6067 2.5350 -1.4630 15 6 3.7179 3.3645 -2.7448 16 8 2.8501 4.4962 -2.6553 17 6 1.4679 4.1625 -2.5138 18 6 1.0207 3.3190 -3.7091 19 6 1.2175 4.1170 -4.9995 20 6 0.3837 5.3986 -4.9390 21 6 0.8328 6.2424 -3.7444 22 6 0.6359 5.4449 -2.4537 23 6 1.2645 3.3629 -1.2240 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.8969 -0.4192 2.6693 30 1 3.9325 3.1335 -0.6122 31 1 4.2349 1.6480 -1.5461 32 1 4.7461 3.7039 -2.8701 33 1 3.4303 2.7526 -3.5999 34 1 1.6148 2.4062 -3.7523 35 1 -0.0327 3.0617 -3.5983 36 1 0.8983 3.5158 -5.8509 37 1 2.2709 4.3740 -5.1108 38 1 -0.6697 5.1418 -4.8269 39 1 0.5234 5.9669 -5.8584 40 1 0.2394 7.1557 -3.7011 41 1 1.8865 6.4985 -3.8562 42 1 -0.4177 5.1894 -2.3417 43 1 0.9563 6.0462 -1.6028 44 1 0.2188 3.0677 -1.1380 45 1 1.5418 3.9783 -0.3680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:47 Heat of formation + Delta-G solvation = -65.033304 kcal Electronic energy + Delta-G solvation = -22575.463245 eV Core-core repulsion = 19591.772604 eV Total energy + Delta-G solvation = -2983.690641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42564 -38.15093 -36.87079 -34.15317 -32.92712 -32.50117 -31.54828 -30.19553 -27.81335 -26.29686 -24.40079 -23.79915 -23.17189 -21.98562 -20.91144 -20.05843 -18.23414 -17.31981 -16.84144 -16.46871 -16.05225 -15.75302 -15.64853 -15.40799 -14.88548 -14.54993 -14.23987 -14.16900 -13.71681 -13.61363 -13.30976 -13.12682 -13.03714 -12.95218 -12.74579 -12.54402 -12.41343 -12.26431 -12.03466 -12.00298 -11.85243 -11.70231 -11.49608 -11.34029 -11.24161 -11.13931 -10.50800 -10.43289 -10.14806 -8.54590 -7.80516 -5.36060 1.43835 1.45855 1.52191 2.51097 2.93633 3.25622 3.54400 3.81401 3.89204 3.97168 4.10608 4.27446 4.31173 4.33645 4.45786 4.51432 4.55114 4.59295 4.66989 4.67452 4.71996 4.80617 4.85910 4.89758 4.90952 4.94699 5.06909 5.14978 5.16167 5.18237 5.24823 5.35201 5.36232 5.40265 5.48536 5.50458 5.53115 5.62756 5.65095 5.71237 5.87935 6.48044 6.49449 7.20554 7.92593 8.42065 9.16693 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.005864 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.604432 B = 4773.474291 C = 4966.335251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 N -0.594 5.594 4 C -0.246 4.246 5 H 0.051 0.949 6 C -0.041 4.041 7 N -0.919 5.919 8 Si 0.949 3.051 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.174 3.826 13 H 0.059 0.941 14 C -0.149 4.149 15 C 0.070 3.930 16 O -0.381 6.381 17 C 0.124 3.876 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.135 4.135 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.249 0.751 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 7.624 -13.926 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.314 5.314 4 C -0.376 4.376 5 H 0.068 0.932 6 C -0.237 4.237 7 N -0.564 5.564 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.206 1.206 12 C 0.067 3.933 13 H 0.077 0.923 14 C -0.189 4.189 15 C -0.007 4.007 16 O -0.301 6.301 17 C 0.085 3.915 18 C -0.178 4.178 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.175 4.175 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.104 7.683 -13.820 16.950 hybrid contribution 0.331 -0.404 1.634 1.715 sum -5.774 7.279 -12.187 15.324 Atomic orbital electron populations 1.22148 0.98315 1.00133 1.00156 1.20911 0.91780 0.86061 1.00291 1.44136 1.74059 1.11510 1.01709 1.19028 1.33397 0.93674 0.91524 0.93156 1.25657 0.97611 0.98422 1.02031 1.70108 1.38003 1.16739 1.31588 0.85620 0.77679 0.77415 0.81451 1.20728 1.21847 1.20637 1.20528 0.92508 0.92175 0.88042 0.92297 1.22456 0.99213 0.99107 0.98083 1.22553 0.94466 0.87996 0.95678 1.87855 1.16807 1.31621 1.93806 1.21492 0.81844 0.95146 0.93052 1.22112 1.02032 0.98557 0.95137 1.21443 1.00536 0.96646 0.96274 1.21519 0.99666 0.95857 0.98103 1.21434 1.01551 0.98137 0.93742 1.21535 0.99008 0.94622 0.98913 1.22467 0.99950 0.97614 0.97446 0.94941 0.93458 0.92457 0.91440 0.96157 0.94160 0.94196 0.93519 0.88515 0.91970 0.92124 0.90616 0.90951 0.92403 0.91474 0.90868 0.90924 0.92479 0.89941 0.92747 0.92025 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 10.23 71.98 0.74 -5.11 16 2 C 0.14 6.43 5.90 86.38 0.51 6.94 16 3 N -0.59 -29.28 2.40 -677.39 -1.63 -30.91 16 4 C -0.25 -13.47 8.20 84.03 0.69 -12.78 16 5 H 0.05 2.83 6.77 -2.91 -0.02 2.81 16 6 C -0.04 -2.28 4.93 84.86 0.42 -1.87 16 7 N -0.92 -53.93 11.32 21.65 0.25 -53.68 16 8 Si 0.95 45.49 29.61 68.60 2.03 47.52 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 C 0.17 7.16 2.41 45.11 0.11 7.27 16 13 H 0.06 2.28 6.36 -2.39 -0.02 2.27 16 14 C -0.15 -6.08 5.44 30.68 0.17 -5.91 16 15 C 0.07 2.22 6.51 72.01 0.47 2.69 16 16 O -0.38 -12.46 8.92 -148.98 -1.33 -13.79 16 17 C 0.12 3.70 0.68 -10.77 -0.01 3.69 16 18 C -0.14 -3.52 4.03 30.59 0.12 -3.40 16 19 C -0.11 -2.29 5.78 30.60 0.18 -2.11 16 20 C -0.11 -2.07 5.93 30.60 0.18 -1.89 16 21 C -0.11 -2.34 5.78 30.59 0.18 -2.17 16 22 C -0.10 -2.65 4.94 30.59 0.15 -2.50 16 23 C -0.14 -5.01 4.21 30.69 0.13 -4.88 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 3.70 5.33 -2.39 -0.01 3.68 16 28 H 0.02 0.92 8.04 -2.38 -0.02 0.90 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 30 H 0.04 1.88 7.57 -2.39 -0.02 1.86 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.06 1.75 6.35 -2.38 -0.02 1.73 16 34 H 0.06 1.62 4.98 -2.39 -0.01 1.61 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.30 7.69 -2.39 -0.02 1.28 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.36 7.69 -2.38 -0.02 1.34 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.75 6.86 -2.38 -0.02 1.74 16 Total: -1.00 -60.97 330.32 4.28 -56.69 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.93 Total: 16.18 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.03 Total: -22.01 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.38 Total: -84.59 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.33 Total: -13.79 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -60.97 4.28 -56.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.345 kcal (2) G-P(sol) polarization free energy of solvation -60.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds