Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47095 * 2 1 4 4 C 1.36939 * 119.99898 * 95.87204 * 3 2 1 5 5 H 1.07998 * 119.99974 * 216.10832 * 4 3 2 6 6 C 1.38807 * 120.00270 * 36.10984 * 4 3 2 7 7 N 1.31614 * 120.00496 * 214.32829 * 6 4 3 8 8 Si 1.86809 * 120.00075 * 34.32598 * 6 4 3 9 9 H 1.48496 * 109.46794 * 95.20853 * 8 6 4 10 10 H 1.48496 * 109.47355 * 215.20824 * 8 6 4 11 11 H 1.48502 * 109.46905 * 335.21330 * 8 6 4 12 12 C 1.46498 * 119.99923 * 275.86526 * 3 2 1 13 13 H 1.08996 * 109.54725 * 359.82174 * 12 3 2 14 14 C 1.53186 * 109.54111 * 120.00642 * 12 3 2 15 15 C 1.53097 * 109.14500 * 176.87954 * 14 12 3 16 16 O 1.42902 * 109.42948 * 302.37930 * 15 14 12 17 17 C 1.42880 * 114.12476 * 61.11032 * 16 15 14 18 18 C 1.52995 * 109.51797 * 179.00286 * 17 16 15 19 19 C 1.52991 * 109.50555 * 299.76916 * 18 17 16 20 20 C 1.53007 * 109.47253 * 300.01703 * 19 18 17 21 21 C 1.53001 * 109.43888 * 60.04436 * 20 19 18 22 22 C 1.52981 * 109.52795 * 58.89822 * 17 16 15 23 23 C 1.53097 * 109.44101 * 298.92786 * 17 16 15 24 24 H 1.09003 * 109.47121 * 64.99285 * 1 2 3 25 25 H 1.09004 * 109.47479 * 184.99749 * 1 2 3 26 26 H 1.08997 * 109.47252 * 304.99950 * 1 2 3 27 27 H 1.08996 * 109.46864 * 239.99691 * 2 1 3 28 28 H 1.09002 * 109.46764 * 120.00568 * 2 1 3 29 29 H 0.96998 * 120.00777 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.52558 * 296.77424 * 14 12 3 31 31 H 1.08992 * 109.52399 * 56.97863 * 14 12 3 32 32 H 1.09003 * 109.48213 * 62.36677 * 15 14 12 33 33 H 1.09000 * 109.47686 * 182.39085 * 15 14 12 34 34 H 1.08999 * 109.46676 * 59.78105 * 18 17 16 35 35 H 1.08999 * 109.46575 * 179.75881 * 18 17 16 36 36 H 1.09005 * 109.47331 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47377 * 60.01796 * 19 18 17 38 38 H 1.09001 * 109.47320 * 300.06050 * 20 19 18 39 39 H 1.08998 * 109.48327 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46999 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46877 * 59.96560 * 21 20 19 42 42 H 1.09004 * 109.46602 * 180.24268 * 22 17 16 43 43 H 1.08993 * 109.47006 * 300.22205 * 22 17 16 44 44 H 1.08993 * 109.52022 * 297.65103 * 23 17 16 45 45 H 1.08996 * 109.52156 * 177.46799 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3610 1.9862 1.1797 5 1 2.1608 3.0375 1.3255 6 6 2.9655 1.2485 2.1882 7 7 2.7093 1.5243 3.4494 8 14 4.1428 -0.1358 1.7554 9 1 5.5374 0.3735 1.7840 10 1 3.9973 -1.2360 2.7421 11 1 3.8296 -0.6451 0.3961 12 6 2.1403 2.1150 -1.2621 13 1 1.8276 1.4754 -2.0874 14 6 1.2536 3.3633 -1.2167 15 6 1.4471 4.1638 -2.5073 16 8 2.8273 4.5041 -2.6532 17 6 3.7000 3.3767 -2.7473 18 6 5.1410 3.8591 -2.9247 19 6 5.2481 4.6880 -4.2061 20 6 4.8474 3.8268 -5.4056 21 6 3.4056 3.3465 -5.2286 22 6 3.2976 2.5174 -3.9473 23 6 3.5964 2.5439 -1.4668 24 1 -0.3633 0.4344 -0.9314 25 1 -0.3634 -1.0238 0.0895 26 1 -0.3633 0.5894 0.8418 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.1315 1.0085 4.1541 30 1 0.2091 3.0652 -1.1261 31 1 1.5336 3.9780 -0.3613 32 1 1.1290 3.5627 -3.3591 33 1 0.8508 5.0751 -2.4625 34 1 5.4264 4.4727 -2.0702 35 1 5.8065 2.9985 -2.9921 36 1 6.2751 5.0310 -4.3322 37 1 4.5831 5.5490 -4.1386 38 1 5.5118 2.9653 -5.4726 39 1 4.9241 4.4170 -6.3188 40 1 3.1194 2.7333 -6.0831 41 1 2.7413 4.2081 -5.1608 42 1 3.9613 1.6554 -4.0156 43 1 2.2704 2.1757 -3.8213 44 1 3.9231 3.1418 -0.6161 45 1 4.2276 1.6597 -1.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -45.867175 kcal Electronic energy + Delta-G solvation = -22654.711351 eV Core-core repulsion = 19671.851816 eV Total energy + Delta-G solvation = -2982.859535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.18498 -36.79391 -35.58803 -32.40450 -31.58856 -31.29790 -30.48426 -28.76823 -26.53394 -24.27896 -23.25929 -22.65283 -21.82992 -20.76889 -19.51238 -18.76036 -16.42035 -15.99062 -15.46838 -15.13559 -14.64347 -14.43521 -14.38903 -13.79486 -13.43544 -13.28519 -13.09549 -12.77474 -12.42195 -12.16684 -12.07130 -11.99325 -11.80090 -11.67577 -11.17415 -11.10712 -10.89933 -10.82889 -10.68932 -10.44151 -10.39868 -10.26590 -10.10825 -10.03349 -9.80839 -9.51571 -9.14946 -8.87359 -8.37704 -6.77153 -6.04346 -3.29570 3.38014 3.50731 3.55202 4.14992 4.57886 4.80100 4.87736 4.90972 5.00269 5.24339 5.33695 5.40192 5.46346 5.52977 5.60252 5.66288 5.75735 5.77125 5.85653 5.90291 5.94510 5.99449 6.01757 6.11874 6.12992 6.23465 6.28042 6.31379 6.34990 6.36408 6.42488 6.48291 6.52492 6.58409 6.69996 6.76258 6.91168 7.03519 7.13133 7.16419 7.73746 8.06592 8.42810 9.05893 9.77575 10.21020 11.11610 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.006663 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.005695 B = 4201.161367 C = 4559.452117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 N -0.598 5.598 4 C -0.268 4.268 5 H 0.076 0.924 6 C 0.046 3.954 7 N -0.882 5.882 8 Si 0.843 3.157 9 H -0.292 1.292 10 H -0.296 1.296 11 H -0.263 1.263 12 C 0.179 3.821 13 H 0.050 0.950 14 C -0.161 4.161 15 C 0.062 3.938 16 O -0.371 6.371 17 C 0.124 3.876 18 C -0.104 4.104 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.145 4.145 23 C -0.147 4.147 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 2.547 -16.086 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.021 3.979 3 N -0.319 5.319 4 C -0.396 4.396 5 H 0.094 0.906 6 C -0.156 4.156 7 N -0.521 5.521 8 Si 0.670 3.330 9 H -0.220 1.220 10 H -0.223 1.223 11 H -0.188 1.188 12 C 0.072 3.928 13 H 0.068 0.932 14 C -0.200 4.200 15 C -0.015 4.015 16 O -0.291 6.291 17 C 0.084 3.916 18 C -0.141 4.141 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.183 4.183 23 C -0.186 4.186 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.955 2.685 -15.883 16.137 hybrid contribution 0.636 -1.179 0.070 1.342 sum 1.591 1.506 -15.813 15.964 Atomic orbital electron populations 1.22324 0.99479 0.99462 1.01189 1.21076 0.91862 0.86324 0.98651 1.44213 1.74198 1.11056 1.02419 1.18552 1.34974 0.96533 0.89526 0.90617 1.25424 0.98240 0.97169 0.94754 1.70072 1.41013 1.41767 0.99257 0.87380 0.83865 0.82876 0.78833 1.21978 1.22302 1.18762 1.20369 0.92131 0.91799 0.88513 0.93226 1.22603 1.00570 0.98875 0.97970 1.22553 0.82826 0.99308 0.96788 1.87863 1.16382 1.31121 1.93713 1.21437 0.90014 0.86345 0.93831 1.21516 0.94284 1.00106 0.98203 1.21462 1.00678 0.98866 0.94260 1.21518 0.96702 0.99372 0.97848 1.21449 0.97028 0.99840 0.96854 1.22164 1.02255 0.98711 0.95120 1.22599 0.99607 0.99538 0.96903 0.94295 0.94458 0.92138 0.95266 0.92822 0.92856 0.91941 0.90490 0.93922 0.89971 0.91196 0.91137 0.92625 0.91199 0.92467 0.92551 0.92725 0.91572 0.91451 0.91308 0.90046 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.23 37.16 0.38 -2.75 16 2 C 0.15 3.17 4.57 -4.04 -0.02 3.15 16 3 N -0.60 -13.73 2.02 -165.46 -0.33 -14.07 16 4 C -0.27 -7.23 8.47 -15.06 -0.13 -7.35 16 5 H 0.08 2.23 6.93 -52.49 -0.36 1.86 16 6 C 0.05 1.29 4.99 -17.43 -0.09 1.20 16 7 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 8 Si 0.84 21.38 26.29 -169.99 -4.47 16.91 16 9 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 10 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.26 -6.36 5.95 56.52 0.34 -6.02 16 12 C 0.18 3.46 2.41 -67.74 -0.16 3.30 16 13 H 0.05 0.90 6.36 -51.93 -0.33 0.57 16 14 C -0.16 -2.90 5.44 -26.58 -0.14 -3.04 16 15 C 0.06 0.94 6.52 37.21 0.24 1.18 16 16 O -0.37 -6.04 8.92 -35.23 -0.31 -6.35 16 17 C 0.12 1.90 0.68 -90.58 -0.06 1.84 16 18 C -0.10 -1.44 4.94 -26.74 -0.13 -1.58 16 19 C -0.12 -1.38 5.78 -26.73 -0.15 -1.53 16 20 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 21 C -0.11 -1.33 5.78 -26.73 -0.15 -1.48 16 22 C -0.14 -1.95 4.04 -26.74 -0.11 -2.05 16 23 C -0.15 -2.76 4.21 -26.59 -0.11 -2.87 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.03 0.58 8.05 -51.93 -0.42 0.17 16 28 H 0.05 1.27 4.58 -51.93 -0.24 1.03 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.60 6.88 -51.93 -0.36 1.24 16 32 H 0.04 0.58 6.35 -51.93 -0.33 0.26 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.94 4.98 -51.93 -0.26 0.69 16 44 H 0.08 1.75 7.56 -51.93 -0.39 1.36 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -28.89 326.55 -8.40 -37.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.18 Total: 0.40 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.80 Total: -13.41 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.44 Total: -39.76 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.31 Total: -6.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.47 Total: 16.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.89 -8.40 -37.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds