Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47095 * 2 1 4 4 C 1.36939 * 119.99898 * 95.87204 * 3 2 1 5 5 H 1.07998 * 119.99974 * 216.10832 * 4 3 2 6 6 C 1.38807 * 120.00270 * 36.10984 * 4 3 2 7 7 N 1.31614 * 120.00496 * 214.32829 * 6 4 3 8 8 Si 1.86809 * 120.00075 * 34.32598 * 6 4 3 9 9 H 1.48496 * 109.46794 * 95.20853 * 8 6 4 10 10 H 1.48496 * 109.47355 * 215.20824 * 8 6 4 11 11 H 1.48502 * 109.46905 * 335.21330 * 8 6 4 12 12 C 1.46498 * 119.99923 * 275.86526 * 3 2 1 13 13 H 1.08996 * 109.54725 * 359.82174 * 12 3 2 14 14 C 1.53186 * 109.54111 * 120.00642 * 12 3 2 15 15 C 1.53097 * 109.14500 * 176.87954 * 14 12 3 16 16 O 1.42902 * 109.42948 * 302.37930 * 15 14 12 17 17 C 1.42880 * 114.12476 * 61.11032 * 16 15 14 18 18 C 1.52995 * 109.51797 * 179.00286 * 17 16 15 19 19 C 1.52991 * 109.50555 * 299.76916 * 18 17 16 20 20 C 1.53007 * 109.47253 * 300.01703 * 19 18 17 21 21 C 1.53001 * 109.43888 * 60.04436 * 20 19 18 22 22 C 1.52981 * 109.52795 * 58.89822 * 17 16 15 23 23 C 1.53097 * 109.44101 * 298.92786 * 17 16 15 24 24 H 1.09003 * 109.47121 * 64.99285 * 1 2 3 25 25 H 1.09004 * 109.47479 * 184.99749 * 1 2 3 26 26 H 1.08997 * 109.47252 * 304.99950 * 1 2 3 27 27 H 1.08996 * 109.46864 * 239.99691 * 2 1 3 28 28 H 1.09002 * 109.46764 * 120.00568 * 2 1 3 29 29 H 0.96998 * 120.00777 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.52558 * 296.77424 * 14 12 3 31 31 H 1.08992 * 109.52399 * 56.97863 * 14 12 3 32 32 H 1.09003 * 109.48213 * 62.36677 * 15 14 12 33 33 H 1.09000 * 109.47686 * 182.39085 * 15 14 12 34 34 H 1.08999 * 109.46676 * 59.78105 * 18 17 16 35 35 H 1.08999 * 109.46575 * 179.75881 * 18 17 16 36 36 H 1.09005 * 109.47331 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47377 * 60.01796 * 19 18 17 38 38 H 1.09001 * 109.47320 * 300.06050 * 20 19 18 39 39 H 1.08998 * 109.48327 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46999 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46877 * 59.96560 * 21 20 19 42 42 H 1.09004 * 109.46602 * 180.24268 * 22 17 16 43 43 H 1.08993 * 109.47006 * 300.22205 * 22 17 16 44 44 H 1.08993 * 109.52022 * 297.65103 * 23 17 16 45 45 H 1.08996 * 109.52156 * 177.46799 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3610 1.9862 1.1797 5 1 2.1608 3.0375 1.3255 6 6 2.9655 1.2485 2.1882 7 7 2.7093 1.5243 3.4494 8 14 4.1428 -0.1358 1.7554 9 1 5.5374 0.3735 1.7840 10 1 3.9973 -1.2360 2.7421 11 1 3.8296 -0.6451 0.3961 12 6 2.1403 2.1150 -1.2621 13 1 1.8276 1.4754 -2.0874 14 6 1.2536 3.3633 -1.2167 15 6 1.4471 4.1638 -2.5073 16 8 2.8273 4.5041 -2.6532 17 6 3.7000 3.3767 -2.7473 18 6 5.1410 3.8591 -2.9247 19 6 5.2481 4.6880 -4.2061 20 6 4.8474 3.8268 -5.4056 21 6 3.4056 3.3465 -5.2286 22 6 3.2976 2.5174 -3.9473 23 6 3.5964 2.5439 -1.4668 24 1 -0.3633 0.4344 -0.9314 25 1 -0.3634 -1.0238 0.0895 26 1 -0.3633 0.5894 0.8418 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.1315 1.0085 4.1541 30 1 0.2091 3.0652 -1.1261 31 1 1.5336 3.9780 -0.3613 32 1 1.1290 3.5627 -3.3591 33 1 0.8508 5.0751 -2.4625 34 1 5.4264 4.4727 -2.0702 35 1 5.8065 2.9985 -2.9921 36 1 6.2751 5.0310 -4.3322 37 1 4.5831 5.5490 -4.1386 38 1 5.5118 2.9653 -5.4726 39 1 4.9241 4.4170 -6.3188 40 1 3.1194 2.7333 -6.0831 41 1 2.7413 4.2081 -5.1608 42 1 3.9613 1.6554 -4.0156 43 1 2.2704 2.1757 -3.8213 44 1 3.9231 3.1418 -0.6161 45 1 4.2276 1.6597 -1.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -61.807304 kcal Electronic energy + Delta-G solvation = -22655.402567 eV Core-core repulsion = 19671.851816 eV Total energy + Delta-G solvation = -2983.550751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44886 -38.31044 -36.89685 -34.19750 -33.37801 -32.48867 -31.55050 -30.46177 -27.90205 -26.07999 -24.74216 -23.76975 -23.17617 -22.22671 -20.85013 -20.07967 -18.32088 -17.34436 -16.93973 -16.74128 -16.13773 -15.78397 -15.65225 -15.24303 -14.93047 -14.71194 -14.43441 -14.18426 -14.05000 -13.74216 -13.53704 -13.26164 -13.05406 -12.95661 -12.86630 -12.56406 -12.39605 -12.28155 -12.07223 -12.00443 -11.86161 -11.60034 -11.43978 -11.34330 -11.32342 -11.16667 -10.55801 -10.47485 -10.14413 -8.70590 -8.23420 -5.44045 1.32111 1.41842 1.49838 2.45382 2.91380 2.99323 3.35430 3.78560 3.87998 3.95985 4.06649 4.24782 4.30253 4.30829 4.35435 4.42220 4.52438 4.54907 4.65483 4.66447 4.68618 4.73644 4.77321 4.82680 4.84490 4.89768 4.99952 5.07226 5.15027 5.16455 5.22078 5.24875 5.34380 5.34845 5.39711 5.46310 5.48298 5.53090 5.60868 5.64229 5.97290 6.23495 6.49412 7.05853 7.72709 8.14793 8.97355 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.006663 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.005695 B = 4201.161367 C = 4559.452117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 N -0.608 5.608 4 C -0.245 4.245 5 H 0.036 0.964 6 C -0.010 4.010 7 N -0.933 5.933 8 Si 0.907 3.093 9 H -0.301 1.301 10 H -0.300 1.300 11 H -0.240 1.240 12 C 0.175 3.825 13 H 0.076 0.924 14 C -0.154 4.154 15 C 0.068 3.932 16 O -0.383 6.383 17 C 0.126 3.874 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 1.393 -19.911 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.011 3.989 3 N -0.330 5.330 4 C -0.374 4.374 5 H 0.053 0.947 6 C -0.207 4.207 7 N -0.576 5.576 8 Si 0.734 3.266 9 H -0.230 1.230 10 H -0.227 1.227 11 H -0.163 1.163 12 C 0.069 3.931 13 H 0.094 0.906 14 C -0.194 4.194 15 C -0.009 4.009 16 O -0.302 6.302 17 C 0.086 3.914 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.179 4.179 23 C -0.181 4.181 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.894 1.521 -19.761 19.839 hybrid contribution 0.592 -0.745 1.260 1.579 sum 1.486 0.776 -18.501 18.577 Atomic orbital electron populations 1.22170 0.97361 1.00866 1.00920 1.21227 0.93660 0.85224 0.98753 1.44355 1.74397 1.11828 1.02417 1.18337 1.33237 0.94918 0.90953 0.94677 1.25920 0.99940 1.00316 0.94545 1.70168 1.42950 1.44197 1.00290 0.86370 0.80850 0.79936 0.79464 1.22988 1.22678 1.16299 1.20586 0.92811 0.92270 0.87442 0.90576 1.22502 1.00294 0.98196 0.98383 1.22601 0.82642 1.00057 0.95603 1.87869 1.17009 1.31750 1.93613 1.21455 0.90863 0.86098 0.92985 1.21554 0.93498 1.00543 0.98847 1.21427 1.01402 0.98311 0.93643 1.21525 0.96349 0.99623 0.97724 1.21438 0.97437 0.99589 0.96335 1.22129 1.02274 0.98683 0.94782 1.22515 0.98869 0.99261 0.97476 0.92261 0.91704 0.95170 0.92578 0.95121 0.93076 0.91596 0.94541 0.91327 0.88309 0.93137 0.90308 0.91220 0.92296 0.91680 0.90814 0.90720 0.92128 0.90788 0.91260 0.94232 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.23 71.98 0.74 -4.77 16 2 C 0.14 5.64 4.57 86.38 0.39 6.03 16 3 N -0.61 -27.84 2.02 -677.38 -1.37 -29.21 16 4 C -0.24 -13.73 8.47 84.03 0.71 -13.02 16 5 H 0.04 2.23 6.93 -2.91 -0.02 2.21 16 6 C -0.01 -0.57 4.99 84.86 0.42 -0.15 16 7 N -0.93 -58.57 13.97 21.65 0.30 -58.27 16 8 Si 0.91 45.28 26.29 68.60 1.80 47.09 16 9 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 10 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 11 H -0.24 -10.90 5.95 99.48 0.59 -10.31 16 12 C 0.17 6.58 2.41 45.11 0.11 6.69 16 13 H 0.08 2.50 6.36 -2.39 -0.02 2.49 16 14 C -0.15 -5.54 5.44 30.69 0.17 -5.37 16 15 C 0.07 1.91 6.52 72.01 0.47 2.38 16 16 O -0.38 -11.99 8.92 -148.98 -1.33 -13.32 16 17 C 0.13 3.69 0.68 -10.77 -0.01 3.68 16 18 C -0.11 -2.86 4.94 30.59 0.15 -2.71 16 19 C -0.11 -2.38 5.78 30.59 0.18 -2.20 16 20 C -0.11 -2.05 5.93 30.60 0.18 -1.87 16 21 C -0.11 -2.11 5.78 30.59 0.18 -1.94 16 22 C -0.14 -3.30 4.04 30.59 0.12 -3.17 16 23 C -0.14 -5.28 4.21 30.69 0.13 -5.16 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 28 H 0.03 1.40 4.58 -2.39 -0.01 1.39 16 29 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.59 6.88 -2.39 -0.02 1.57 16 32 H 0.07 1.62 6.35 -2.39 -0.02 1.61 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.25 7.69 -2.38 -0.02 1.23 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.61 4.98 -2.39 -0.01 1.59 16 44 H 0.04 1.78 7.56 -2.39 -0.02 1.76 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.30 326.55 4.17 -61.13 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.82 Total: 14.14 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.94 Total: -21.56 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -1.07 Total: -87.48 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.33 Total: -13.32 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.80 Total: 47.09 kcal Total: -65.30 4.17 -61.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.675 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds