Wall clock time and date at job start Mon Mar 30 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47110 * 2 1 4 4 C 1.46903 * 110.99869 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47062 * 155.00109 * 4 3 2 6 6 C 1.53000 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47083 * 300.00078 * 6 5 4 8 8 O 1.42893 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.42902 * 114.00286 * 150.00120 * 8 7 6 10 10 C 1.53001 * 109.47348 * 180.02562 * 9 8 7 11 11 C 1.50699 * 115.55043 * 65.11088 * 10 9 8 12 12 H 1.07995 * 119.99859 * 266.11114 * 11 10 9 13 13 C 1.37880 * 119.99923 * 86.10611 * 11 10 9 14 14 N 1.31510 * 120.00136 * 353.70053 * 13 11 10 15 15 Si 1.86798 * 119.99984 * 173.70228 * 13 11 10 16 16 H 1.48500 * 109.47124 * 89.99932 * 15 13 11 17 17 H 1.48496 * 109.47345 * 209.99971 * 15 13 11 18 18 H 1.48504 * 109.47097 * 330.00369 * 15 13 11 19 19 C 1.52990 * 117.49883 * 279.43814 * 10 9 8 20 20 C 1.52997 * 117.49739 * 210.77875 * 10 9 8 21 21 C 1.53007 * 109.46881 * 59.99773 * 7 6 5 22 22 C 1.52992 * 109.47280 * 299.99806 * 21 7 6 23 23 H 1.09000 * 109.46747 * 299.99707 * 1 2 3 24 24 H 1.09002 * 109.47188 * 59.99815 * 1 2 3 25 25 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46747 * 240.00293 * 2 1 3 27 27 H 1.08991 * 109.46785 * 120.00412 * 2 1 3 28 28 H 1.00899 * 111.00256 * 303.95723 * 3 2 1 29 29 H 1.09001 * 109.47016 * 35.00219 * 4 3 2 30 30 H 1.09001 * 109.47115 * 60.00171 * 5 4 3 31 31 H 1.09000 * 109.47418 * 300.00296 * 5 4 3 32 32 H 1.09001 * 109.46890 * 60.00077 * 6 5 4 33 33 H 1.08997 * 109.47402 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47078 * 300.00257 * 7 6 5 35 35 H 1.09004 * 109.46843 * 300.00616 * 9 8 7 36 36 H 1.09001 * 109.46957 * 59.99660 * 9 8 7 37 37 H 0.97000 * 119.99999 * 179.97438 * 14 13 11 38 38 H 1.09004 * 117.50390 * 0.02562 * 19 10 9 39 39 H 1.09000 * 117.50229 * 145.02063 * 19 10 9 40 40 H 1.08999 * 117.49586 * 214.97914 * 20 10 9 41 41 H 1.08998 * 117.49898 * 359.97438 * 20 10 9 42 42 H 1.08997 * 109.46869 * 60.00356 * 21 7 6 43 43 H 1.09004 * 109.46697 * 179.97438 * 21 7 6 44 44 H 1.08997 * 109.47234 * 179.97438 * 22 21 7 45 45 H 1.08997 * 109.47619 * 300.00091 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9629 2.7447 -0.6102 6 6 5.4924 2.7858 -0.6103 7 6 6.0056 2.6738 0.8267 8 8 7.4340 2.7116 0.8266 9 6 8.0006 3.2786 2.0097 10 6 9.5267 3.2684 1.8998 11 6 10.1060 4.1394 0.8150 12 1 10.3242 3.7195 -0.1557 13 6 10.3574 5.4724 1.0618 14 7 9.9786 6.0134 2.1991 15 14 11.2360 6.5100 -0.2191 16 1 10.2363 7.1232 -1.1300 17 1 12.0111 7.5805 0.4578 18 1 12.1591 5.6510 -1.0036 19 6 10.2488 1.9567 2.2136 20 6 10.3273 3.1279 3.1960 21 6 5.5309 1.3531 1.4363 22 6 4.0015 1.3121 1.4364 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6442 1.9013 -0.7813 29 1 3.8736 0.5924 -0.5904 30 1 3.5775 3.5764 -0.0204 31 1 3.5969 2.8248 -1.6338 32 1 5.8781 1.9541 -1.1998 33 1 5.8306 3.7268 -1.0442 34 1 5.6198 3.5055 1.4162 35 1 7.6516 4.3049 2.1237 36 1 7.6944 2.6924 2.8761 37 1 10.1558 6.9511 2.3729 38 1 9.6368 1.1007 2.4980 39 1 11.1431 1.7237 1.6358 40 1 11.2732 3.6652 3.2639 41 1 9.7669 3.0432 4.1270 42 1 5.9167 0.5215 0.8468 43 1 5.8969 1.2731 2.4599 44 1 3.6633 0.3711 1.8702 45 1 3.6157 2.1438 2.0258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129343220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:10 Heat of formation + Delta-G solvation = -45.601425 kcal Electronic energy + Delta-G solvation = -20930.960695 eV Core-core repulsion = 17948.112683 eV Total energy + Delta-G solvation = -2982.848011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.16535 -37.29058 -35.92632 -34.28990 -31.85284 -30.75582 -30.52327 -27.25695 -25.82380 -24.81101 -23.02228 -21.99932 -21.23487 -20.94753 -19.73875 -19.00913 -16.27122 -16.11052 -15.78255 -15.27294 -15.02902 -14.60300 -14.34539 -14.17444 -13.78010 -13.43246 -13.28138 -12.61389 -12.51914 -12.43691 -12.09935 -11.95879 -11.57694 -11.55695 -11.37872 -11.05347 -10.93865 -10.92322 -10.81426 -10.61165 -10.39688 -10.19932 -10.16232 -9.94415 -9.40306 -8.93452 -8.59214 -8.44216 -8.35175 -8.04569 -5.97755 -4.00598 3.33451 3.39852 3.44421 3.91955 4.41900 4.48278 4.70520 4.81807 4.91021 5.04372 5.22355 5.31428 5.31869 5.34243 5.42310 5.49857 5.51901 5.57349 5.62466 5.67797 5.74401 5.86883 5.90267 5.98667 6.07930 6.15549 6.19169 6.32059 6.35400 6.38985 6.47665 6.54466 6.59199 6.79538 6.80025 6.88727 6.93458 7.13835 7.23434 7.50848 7.58574 7.95668 8.27184 8.55023 9.00143 9.63587 11.11905 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.003875 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.466494 B = 7223.299433 C = 7805.822264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.689 5.689 4 C 0.086 3.914 5 C -0.116 4.116 6 C -0.112 4.112 7 C 0.089 3.911 8 O -0.366 6.366 9 C 0.110 3.890 10 C 0.045 3.955 11 C -0.481 4.481 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.206 4.206 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.101 4.101 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.339 0.661 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.463 -9.105 -3.110 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.320 5.320 4 C -0.023 4.023 5 C -0.154 4.154 6 C -0.150 4.150 7 C 0.030 3.970 8 O -0.285 6.285 9 C 0.034 3.966 10 C 0.045 3.955 11 C -0.519 4.519 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.244 4.244 20 C -0.190 4.190 21 C -0.179 4.179 22 C -0.139 4.139 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.399 -8.930 -2.474 17.972 hybrid contribution 0.487 0.452 -1.211 1.381 sum -14.912 -8.478 -3.685 17.545 Atomic orbital electron populations 1.21772 0.95124 1.01555 1.02331 1.21960 0.95449 0.89789 1.00454 1.60540 1.08120 1.13411 1.49947 1.21593 0.86519 0.97317 0.96869 1.21671 0.96052 0.97350 1.00342 1.21500 0.93525 1.03202 0.96769 1.21914 0.83657 0.95685 0.95743 1.87981 1.16574 1.82687 1.41288 1.22186 0.94876 0.95519 0.84005 1.18729 0.87727 0.93513 0.95544 1.20398 1.41052 0.93208 0.97214 0.92153 1.24977 0.95451 0.97662 0.95397 1.70007 1.46071 1.12520 1.23640 0.86635 0.79924 0.80010 0.81686 1.20691 1.21290 1.19867 1.22954 1.03326 0.92390 1.05694 1.22512 1.02561 1.00951 0.92944 1.22052 0.94872 0.99374 1.01564 1.21450 0.94653 1.01978 0.95832 0.91820 0.92948 0.92360 0.95516 0.91030 0.84301 0.93790 0.90983 0.91995 0.91464 0.90820 0.92892 0.93018 0.96947 0.93177 0.91746 0.90490 0.89811 0.91983 0.91612 0.91792 0.92401 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.17 37.16 0.38 -0.71 16 2 C 0.05 0.46 6.20 -3.82 -0.02 0.44 16 3 N -0.69 -6.87 6.31 -106.72 -0.67 -7.54 16 4 C 0.09 0.97 2.49 -67.71 -0.17 0.81 16 5 C -0.12 -1.36 5.19 -26.73 -0.14 -1.50 16 6 C -0.11 -1.66 5.57 -26.73 -0.15 -1.81 16 7 C 0.09 1.52 2.61 -26.73 -0.07 1.45 16 8 O -0.37 -8.10 9.92 -35.23 -0.35 -8.45 16 9 C 0.11 2.60 5.57 37.16 0.21 2.81 16 10 C 0.05 1.16 1.62 -155.67 -0.25 0.91 16 11 C -0.48 -13.57 8.77 -34.44 -0.30 -13.87 16 12 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 13 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 14 N -0.88 -25.34 12.88 55.43 0.71 -24.62 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.21 -4.73 9.96 -26.70 -0.27 -4.99 16 20 C -0.15 -3.66 9.37 -26.70 -0.25 -3.91 16 21 C -0.14 -2.06 5.54 -26.73 -0.15 -2.21 16 22 C -0.10 -1.25 5.42 -26.74 -0.15 -1.39 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.23 8.05 -51.93 -0.42 -0.19 16 27 H 0.07 0.66 7.43 -51.93 -0.39 0.28 16 28 H 0.34 2.99 8.34 -39.29 -0.33 2.66 16 29 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 35 H 0.05 1.32 8.09 -51.93 -0.42 0.90 16 36 H 0.01 0.27 7.82 -51.93 -0.41 -0.14 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 44 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -29.04 356.45 -9.99 -39.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.60 Total: 1.90 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.42 Total: -22.20 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.04 Total: -32.16 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.35 Total: -8.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.04 -9.99 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129343220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.577 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds