Wall clock time and date at job start Mon Mar 30 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47110 * 2 1 4 4 C 1.46903 * 110.99869 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47062 * 155.00109 * 4 3 2 6 6 C 1.53000 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47083 * 300.00078 * 6 5 4 8 8 O 1.42893 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.42902 * 114.00286 * 150.00120 * 8 7 6 10 10 C 1.53001 * 109.47348 * 180.02562 * 9 8 7 11 11 C 1.50699 * 115.55043 * 65.11088 * 10 9 8 12 12 H 1.07995 * 119.99859 * 266.11114 * 11 10 9 13 13 C 1.37880 * 119.99923 * 86.10611 * 11 10 9 14 14 N 1.31510 * 120.00136 * 353.70053 * 13 11 10 15 15 Si 1.86798 * 119.99984 * 173.70228 * 13 11 10 16 16 H 1.48500 * 109.47124 * 89.99932 * 15 13 11 17 17 H 1.48496 * 109.47345 * 209.99971 * 15 13 11 18 18 H 1.48504 * 109.47097 * 330.00369 * 15 13 11 19 19 C 1.52990 * 117.49883 * 279.43814 * 10 9 8 20 20 C 1.52997 * 117.49739 * 210.77875 * 10 9 8 21 21 C 1.53007 * 109.46881 * 59.99773 * 7 6 5 22 22 C 1.52992 * 109.47280 * 299.99806 * 21 7 6 23 23 H 1.09000 * 109.46747 * 299.99707 * 1 2 3 24 24 H 1.09002 * 109.47188 * 59.99815 * 1 2 3 25 25 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46747 * 240.00293 * 2 1 3 27 27 H 1.08991 * 109.46785 * 120.00412 * 2 1 3 28 28 H 1.00899 * 111.00256 * 303.95723 * 3 2 1 29 29 H 1.09001 * 109.47016 * 35.00219 * 4 3 2 30 30 H 1.09001 * 109.47115 * 60.00171 * 5 4 3 31 31 H 1.09000 * 109.47418 * 300.00296 * 5 4 3 32 32 H 1.09001 * 109.46890 * 60.00077 * 6 5 4 33 33 H 1.08997 * 109.47402 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47078 * 300.00257 * 7 6 5 35 35 H 1.09004 * 109.46843 * 300.00616 * 9 8 7 36 36 H 1.09001 * 109.46957 * 59.99660 * 9 8 7 37 37 H 0.97000 * 119.99999 * 179.97438 * 14 13 11 38 38 H 1.09004 * 117.50390 * 0.02562 * 19 10 9 39 39 H 1.09000 * 117.50229 * 145.02063 * 19 10 9 40 40 H 1.08999 * 117.49586 * 214.97914 * 20 10 9 41 41 H 1.08998 * 117.49898 * 359.97438 * 20 10 9 42 42 H 1.08997 * 109.46869 * 60.00356 * 21 7 6 43 43 H 1.09004 * 109.46697 * 179.97438 * 21 7 6 44 44 H 1.08997 * 109.47234 * 179.97438 * 22 21 7 45 45 H 1.08997 * 109.47619 * 300.00091 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9629 2.7447 -0.6102 6 6 5.4924 2.7858 -0.6103 7 6 6.0056 2.6738 0.8267 8 8 7.4340 2.7116 0.8266 9 6 8.0006 3.2786 2.0097 10 6 9.5267 3.2684 1.8998 11 6 10.1060 4.1394 0.8150 12 1 10.3242 3.7195 -0.1557 13 6 10.3574 5.4724 1.0618 14 7 9.9786 6.0134 2.1991 15 14 11.2360 6.5100 -0.2191 16 1 10.2363 7.1232 -1.1300 17 1 12.0111 7.5805 0.4578 18 1 12.1591 5.6510 -1.0036 19 6 10.2488 1.9567 2.2136 20 6 10.3273 3.1279 3.1960 21 6 5.5309 1.3531 1.4363 22 6 4.0015 1.3121 1.4364 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6442 1.9013 -0.7813 29 1 3.8736 0.5924 -0.5904 30 1 3.5775 3.5764 -0.0204 31 1 3.5969 2.8248 -1.6338 32 1 5.8781 1.9541 -1.1998 33 1 5.8306 3.7268 -1.0442 34 1 5.6198 3.5055 1.4162 35 1 7.6516 4.3049 2.1237 36 1 7.6944 2.6924 2.8761 37 1 10.1558 6.9511 2.3729 38 1 9.6368 1.1007 2.4980 39 1 11.1431 1.7237 1.6358 40 1 11.2732 3.6652 3.2639 41 1 9.7669 3.0432 4.1270 42 1 5.9167 0.5215 0.8468 43 1 5.8969 1.2731 2.4599 44 1 3.6633 0.3711 1.8702 45 1 3.6157 2.1438 2.0258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129343220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:10 Heat of formation + Delta-G solvation = -62.011512 kcal Electronic energy + Delta-G solvation = -20931.672289 eV Core-core repulsion = 17948.112683 eV Total energy + Delta-G solvation = -2983.559606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37291 -38.84717 -37.42346 -35.46074 -33.97712 -31.83204 -31.46546 -28.54508 -27.60336 -26.65858 -23.98777 -23.04781 -22.81420 -22.19044 -21.18510 -20.66859 -18.20056 -17.44523 -16.77538 -16.75456 -16.36554 -16.06019 -15.87739 -15.59808 -14.90805 -14.82220 -14.42349 -14.16302 -13.91252 -13.57988 -13.28859 -13.15347 -13.01871 -12.87257 -12.71270 -12.55010 -12.36274 -12.33124 -12.08427 -12.05393 -11.89483 -11.82487 -11.40178 -11.26764 -11.25604 -10.82009 -10.42624 -10.16026 -9.97036 -9.36533 -8.10676 -6.19886 1.40549 1.41436 1.51959 2.43475 2.79936 3.17800 3.21428 3.59650 3.71166 3.77464 4.16872 4.18476 4.24548 4.27747 4.32763 4.38881 4.42700 4.52382 4.53422 4.55376 4.58008 4.65156 4.71275 4.77886 4.84970 4.94927 4.99125 5.04680 5.05500 5.08039 5.17378 5.21573 5.22626 5.23420 5.33642 5.35669 5.45219 5.61424 5.64397 5.78505 6.12131 6.41266 6.52055 6.65969 6.83961 7.47028 8.98246 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.003875 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.466494 B = 7223.299433 C = 7805.822264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.692 5.692 4 C 0.092 3.908 5 C -0.107 4.107 6 C -0.108 4.108 7 C 0.079 3.921 8 O -0.389 6.389 9 C 0.126 3.874 10 C 0.011 3.989 11 C -0.502 4.502 12 H 0.045 0.955 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.271 1.271 19 C -0.184 4.184 20 C -0.151 4.151 21 C -0.131 4.131 22 C -0.094 4.094 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.347 0.653 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.021 0.979 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 -10.046 -3.775 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.324 5.324 4 C -0.017 4.017 5 C -0.145 4.145 6 C -0.146 4.146 7 C 0.021 3.979 8 O -0.308 6.308 9 C 0.050 3.950 10 C 0.010 3.990 11 C -0.540 4.540 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.547 5.547 15 Si 0.775 3.225 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.221 4.221 20 C -0.188 4.188 21 C -0.169 4.169 22 C -0.132 4.132 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.677 -9.880 -3.146 19.637 hybrid contribution 0.846 0.713 -1.015 1.502 sum -15.830 -9.167 -4.161 18.760 Atomic orbital electron populations 1.21732 0.93938 1.02328 1.02305 1.22008 0.96415 0.88987 1.00368 1.60496 1.07010 1.14383 1.50544 1.21456 0.87551 0.96863 0.95864 1.21597 0.93406 0.97682 1.01778 1.21482 0.95844 1.02355 0.94965 1.22232 0.81226 0.96874 0.97518 1.87932 1.19525 1.82500 1.40861 1.21822 0.93785 0.94186 0.85227 1.18900 0.89038 0.95223 0.95811 1.20614 1.41702 0.94193 0.97446 0.93639 1.25651 0.96019 0.98639 0.97286 1.70099 1.46749 1.12778 1.25058 0.85700 0.78890 0.78481 0.79447 1.20272 1.20574 1.19524 1.22946 1.02897 0.92129 1.04173 1.22433 1.01595 1.01470 0.93340 1.21944 0.96593 0.97623 1.00788 1.21384 0.92681 1.02357 0.96808 0.92458 0.92330 0.91232 0.95141 0.91555 0.83355 0.93728 0.91210 0.89821 0.91433 0.92378 0.93753 0.96096 0.95243 0.93099 0.89332 0.90536 0.91766 0.90419 0.91581 0.92464 0.91236 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.17 71.98 0.73 -1.04 16 2 C 0.05 0.78 6.20 86.31 0.54 1.32 16 3 N -0.69 -12.17 6.31 -491.57 -3.10 -15.28 16 4 C 0.09 1.90 2.49 44.91 0.11 2.01 16 5 C -0.11 -2.32 5.19 30.59 0.16 -2.16 16 6 C -0.11 -3.16 5.57 30.59 0.17 -2.99 16 7 C 0.08 2.73 2.61 30.60 0.08 2.81 16 8 O -0.39 -17.38 9.92 -148.98 -1.48 -18.85 16 9 C 0.13 6.03 5.57 71.98 0.40 6.44 16 10 C 0.01 0.55 1.62 -52.93 -0.09 0.47 16 11 C -0.50 -28.79 8.77 25.60 0.22 -28.57 16 12 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 13 C 0.02 1.35 5.38 84.66 0.46 1.80 16 14 N -0.91 -52.76 12.88 21.45 0.28 -52.48 16 15 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 19 C -0.18 -8.28 9.96 30.61 0.30 -7.97 16 20 C -0.15 -7.24 9.37 30.62 0.29 -6.96 16 21 C -0.13 -3.74 5.54 30.59 0.17 -3.57 16 22 C -0.09 -2.18 5.42 30.59 0.17 -2.01 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.03 0.45 8.05 -2.39 -0.02 0.43 16 27 H 0.07 1.08 7.43 -2.39 -0.02 1.07 16 28 H 0.35 5.21 8.34 -89.69 -0.75 4.46 16 29 H 0.04 0.94 7.80 -2.39 -0.02 0.92 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.58 7.79 -2.39 -0.02 1.57 16 35 H 0.02 1.10 8.09 -2.38 -0.02 1.08 16 36 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 39 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.06 3.29 8.14 -2.39 -0.02 3.28 16 41 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.69 7.87 -2.38 -0.02 1.67 16 44 H 0.07 1.47 7.45 -2.39 -0.02 1.45 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -61.97 356.45 1.61 -60.35 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.18 Total: 20.10 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 3.71 Total: -40.44 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -2.83 Total: -67.76 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.48 Total: -18.85 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.97 1.61 -60.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129343220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.660 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds