Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47106 * 2 1 4 4 C 1.46497 * 120.00140 * 275.08969 * 3 2 1 5 5 C 1.50698 * 109.46910 * 264.55201 * 4 3 2 6 6 H 1.08003 * 120.00467 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00502 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47099 * 89.99824 * 9 7 5 11 11 H 1.48501 * 109.47552 * 210.00598 * 9 7 5 12 12 H 1.48505 * 109.47006 * 330.00252 * 9 7 5 13 13 C 1.34778 * 120.00128 * 95.08566 * 3 2 1 14 14 O 1.21287 * 119.99663 * 354.99045 * 13 3 2 15 15 C 1.50693 * 120.00168 * 175.25702 * 13 3 2 16 16 H 1.09000 * 109.47414 * 317.90464 * 15 13 3 17 17 C 1.53001 * 109.46712 * 77.90464 * 15 13 3 18 18 C 1.52998 * 109.47225 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47321 * 299.99854 * 18 17 15 20 20 C 1.53001 * 109.46852 * 59.99917 * 19 18 17 21 21 C 1.52998 * 109.47225 * 300.00141 * 20 19 18 22 22 C 1.53004 * 109.47047 * 300.00461 * 21 20 19 23 23 C 1.53004 * 109.47372 * 180.02562 * 21 20 19 24 24 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47324 * 299.99925 * 1 2 3 26 26 H 1.09003 * 109.46642 * 60.00148 * 1 2 3 27 27 H 1.09004 * 109.47517 * 239.99700 * 2 1 3 28 28 H 1.09007 * 109.47102 * 119.99978 * 2 1 3 29 29 H 1.09001 * 109.47148 * 24.54902 * 4 3 2 30 30 H 1.09003 * 109.47340 * 144.54736 * 4 3 2 31 31 H 0.96997 * 119.99914 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47246 * 299.99628 * 17 15 13 33 33 H 1.08992 * 109.47536 * 59.99816 * 17 15 13 34 34 H 1.09000 * 109.47181 * 59.99828 * 18 17 15 35 35 H 1.08995 * 109.47680 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.47679 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46972 * 300.00102 * 19 18 17 38 38 H 1.09000 * 109.47181 * 60.00313 * 20 19 18 39 39 H 1.09000 * 109.47246 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.47238 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47049 * 299.99369 * 22 21 20 42 42 H 1.08988 * 109.47544 * 59.99866 * 22 21 20 43 43 H 1.09001 * 109.46986 * 299.99525 * 23 21 20 44 44 H 1.08994 * 109.47340 * 59.99769 * 23 21 20 45 45 H 1.09001 * 109.46803 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1564 2.1094 -1.2637 5 6 3.5765 1.9976 -1.7552 6 1 4.3037 1.4402 -1.1833 7 6 3.9476 2.6068 -2.9351 8 7 3.0623 3.2859 -3.6314 9 14 5.7081 2.4689 -3.5442 10 1 5.8396 1.2703 -4.4109 11 1 6.0593 3.6837 -4.3227 12 1 6.6252 2.3430 -2.3830 13 6 2.3405 1.9821 1.1626 14 8 2.1410 1.4131 2.2150 15 6 2.9431 3.3633 1.1553 16 1 3.6846 3.4321 0.3593 17 6 1.8420 4.3987 0.9174 18 6 2.4537 5.8010 0.9093 19 6 3.1260 6.0720 2.2567 20 6 4.2271 5.0367 2.4946 21 6 3.6154 3.6343 2.5027 22 6 2.5748 3.5383 3.6203 23 6 4.7163 2.5989 2.7412 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.4807 1.6823 -2.0048 30 1 1.9075 3.1590 -1.1073 31 1 3.3233 3.7142 -4.4617 32 1 1.3634 4.2060 -0.0428 33 1 1.1005 4.3300 1.7132 34 1 3.1950 5.8695 0.1131 35 1 1.6695 6.5387 0.7394 36 1 3.5623 7.0709 2.2508 37 1 2.3847 6.0036 3.0529 38 1 4.9684 5.1051 1.6984 39 1 4.7058 5.2294 3.4547 40 1 2.1392 2.5390 3.6263 41 1 3.0537 3.7312 4.5802 42 1 1.7904 4.2758 3.4508 43 1 5.4579 2.6672 1.9452 44 1 5.1949 2.7921 3.7012 45 1 4.2805 1.5999 2.7465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226583027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -75.079253 kcal Electronic energy + Delta-G solvation = -22752.593790 eV Core-core repulsion = 19768.467524 eV Total energy + Delta-G solvation = -2984.126266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76327 -39.10098 -36.94490 -34.72239 -33.93790 -32.78343 -31.07354 -28.94756 -28.09771 -27.43655 -25.05798 -24.69870 -23.33784 -21.99601 -20.15468 -19.09146 -18.62655 -17.75798 -17.04418 -16.34818 -16.09063 -15.81090 -15.50759 -15.25308 -14.83254 -14.51990 -14.34903 -14.00032 -13.91125 -13.61866 -13.47675 -13.24120 -13.09755 -12.77674 -12.73690 -12.63532 -12.51281 -12.24639 -12.22351 -12.12645 -11.89341 -11.73195 -11.70752 -11.56116 -11.35652 -10.97005 -10.84557 -10.58274 -9.93962 -9.37677 -8.18651 -6.31926 1.39043 1.41726 1.50521 1.86632 2.34556 2.49569 3.10734 3.67930 3.78655 3.85457 4.10651 4.23056 4.28510 4.39518 4.42061 4.52079 4.53465 4.55370 4.61966 4.64209 4.78412 4.82292 4.90938 4.94915 4.99624 5.00998 5.05845 5.11859 5.18501 5.23451 5.25181 5.28581 5.30027 5.33757 5.36078 5.49191 5.52304 5.62066 5.71326 5.82272 5.98229 6.10677 6.63807 6.87355 7.35703 7.52718 8.86393 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014329 B = 0.008793 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.664184 B = 3183.706443 C = 4104.950357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.604 5.604 4 C 0.247 3.753 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.025 3.975 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.272 1.272 13 C 0.520 3.480 14 O -0.577 6.577 15 C -0.090 4.090 16 H 0.081 0.919 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.041 4.041 22 C -0.154 4.154 23 C -0.140 4.140 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.016 0.984 30 H 0.041 0.959 31 H 0.267 0.733 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 3.175 9.608 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.334 5.334 4 C 0.126 3.874 5 C -0.579 4.579 6 H 0.066 0.934 7 C -0.175 4.175 8 N -0.556 5.556 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.196 1.196 13 C 0.310 3.690 14 O -0.460 6.460 15 C -0.111 4.111 16 H 0.100 0.900 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.143 4.143 21 C -0.042 4.042 22 C -0.211 4.211 23 C -0.198 4.198 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.024 2.971 9.947 10.432 hybrid contribution 0.879 -0.336 -1.091 1.440 sum -0.145 2.635 8.857 9.241 Atomic orbital electron populations 1.21992 0.94870 1.02837 1.01160 1.21389 0.95198 0.83040 1.01974 1.48342 1.63106 1.14119 1.07829 1.19232 0.95675 0.92483 0.80020 1.21616 0.96178 1.33165 1.06965 0.93396 1.25565 1.00879 0.94600 0.96485 1.70003 1.35527 1.34270 1.15758 0.85692 0.80659 0.77776 0.78427 1.20199 1.20450 1.19629 1.20884 0.76730 0.88688 0.82653 1.90398 1.57239 1.67605 1.30742 1.21275 0.98837 0.91218 0.99749 0.90048 1.21533 0.96832 0.94871 1.01148 1.21471 1.00086 0.95173 0.98252 1.21560 0.97990 0.98791 0.96718 1.21603 0.97810 0.92939 1.01986 1.20287 0.95333 0.95516 0.93037 1.22285 0.98335 1.03884 0.96595 1.21878 0.97717 0.98932 1.01248 0.89586 0.93606 0.93225 0.91186 0.91158 0.96585 0.94172 0.92388 0.92859 0.91435 0.93169 0.90648 0.90455 0.90912 0.92911 0.90245 0.90661 0.92601 0.92636 0.94117 0.91189 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 10.24 71.98 0.74 -4.03 16 2 C 0.11 4.01 6.12 86.38 0.53 4.54 16 3 N -0.60 -25.98 2.47 -826.14 -2.04 -28.02 16 4 C 0.25 11.91 4.87 85.63 0.42 12.33 16 5 C -0.54 -28.26 8.18 25.60 0.21 -28.05 16 6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.03 1.33 5.46 84.65 0.46 1.79 16 8 N -0.92 -50.20 13.29 21.45 0.28 -49.92 16 9 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.52 21.75 6.07 87.65 0.53 22.28 16 14 O -0.58 -24.81 11.32 -3.05 -0.03 -24.84 16 15 C -0.09 -3.39 1.04 -11.54 -0.01 -3.40 16 16 H 0.08 3.57 6.60 -2.39 -0.02 3.56 16 17 C -0.11 -3.64 4.68 30.59 0.14 -3.50 16 18 C -0.11 -3.25 5.92 30.59 0.18 -3.06 16 19 C -0.11 -2.73 5.65 30.59 0.17 -2.56 16 20 C -0.11 -2.82 4.73 30.59 0.14 -2.68 16 21 C -0.04 -1.32 0.51 -52.18 -0.03 -1.34 16 22 C -0.15 -4.67 7.47 71.98 0.54 -4.13 16 23 C -0.14 -4.63 8.19 71.98 0.59 -4.04 16 24 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 28 H 0.07 2.63 7.35 -2.38 -0.02 2.61 16 29 H 0.02 0.82 8.03 -2.39 -0.02 0.81 16 30 H 0.04 2.01 4.63 -2.39 -0.01 1.99 16 31 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.05 2.06 5.61 -2.39 -0.01 2.05 16 33 H 0.07 2.18 6.43 -2.39 -0.02 2.17 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.63 6.43 -2.39 -0.02 1.61 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.72 4.97 -2.67 -0.01 2.70 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.57 4.81 -2.39 -0.01 1.56 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.04 1.61 6.20 -2.39 -0.01 1.60 16 Total: -1.00 -57.09 331.90 5.80 -51.29 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.95 Total: 23.38 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.62 Total: -15.86 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.76 Total: -77.94 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.03 Total: -24.84 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -57.09 5.80 -51.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226583027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.788 kcal (2) G-P(sol) polarization free energy of solvation -57.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds