Wall clock time and date at job start Mon Mar 30 2020 08:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00388 * 2 1 4 4 C 1.52997 * 109.47554 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47277 * 67.84483 * 4 3 2 6 6 C 1.46902 * 111.00096 * 293.74169 * 5 4 3 7 7 C 1.50691 * 109.46930 * 300.20100 * 6 5 4 8 8 H 1.07995 * 120.00417 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99909 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99799 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47574 * 89.99832 * 11 9 7 13 13 H 1.48503 * 109.47128 * 329.99830 * 11 9 7 14 14 H 1.48502 * 109.47153 * 209.99964 * 11 9 7 15 15 C 1.46900 * 110.99765 * 57.69683 * 5 4 3 16 16 H 1.09007 * 111.20330 * 292.33301 * 15 5 4 17 17 C 1.50629 * 111.41136 * 57.26853 * 15 5 4 18 18 C 1.26242 * 122.10312 * 207.56380 * 17 15 5 19 19 C 1.50665 * 122.11015 * 214.17478 * 18 17 15 20 20 C 1.55115 * 99.44392 * 91.23648 * 19 18 17 21 21 C 1.54379 * 109.89653 * 306.57346 * 20 19 18 22 22 C 1.52774 * 111.70396 * 89.99408 * 21 20 19 23 23 C 1.54375 * 111.73441 * 232.39905 * 22 21 20 24 24 H 1.09004 * 109.47202 * 300.00191 * 1 2 3 25 25 H 1.08997 * 109.47021 * 60.00052 * 1 2 3 26 26 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 59.99536 * 3 2 1 28 28 H 1.09001 * 109.47054 * 300.00011 * 3 2 1 29 29 H 1.09005 * 109.47179 * 307.84670 * 4 3 2 30 30 H 1.08996 * 109.47514 * 187.84594 * 4 3 2 31 31 H 1.09001 * 109.47037 * 180.19991 * 6 5 4 32 32 H 1.08999 * 109.46683 * 60.20182 * 6 5 4 33 33 H 0.97000 * 120.00357 * 180.02562 * 10 9 7 34 34 H 1.07995 * 118.96860 * 27.63509 * 17 15 5 35 35 H 1.08004 * 118.91396 * 34.22549 * 18 17 15 36 36 H 1.09002 * 111.40667 * 333.67298 * 19 18 17 37 37 H 1.09001 * 111.45700 * 208.82039 * 19 18 17 38 38 H 1.09003 * 109.39383 * 186.44157 * 20 19 18 39 39 H 1.09002 * 109.39821 * 66.71060 * 20 19 18 40 40 H 1.09007 * 109.03411 * 329.41999 * 21 20 19 41 41 H 1.09002 * 108.97626 * 210.53047 * 21 20 19 42 42 H 1.08998 * 109.02370 * 111.82244 * 22 21 20 43 43 H 1.08996 * 109.02555 * 352.97987 * 22 21 20 44 44 H 1.09003 * 109.40786 * 330.73091 * 23 22 21 45 45 H 1.09003 * 109.33103 * 210.94526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9818 0.6255 -1.2837 6 6 3.5257 -0.7621 -1.4405 7 6 4.0836 -1.6036 -0.3218 8 1 4.7135 -1.1528 0.4306 9 6 3.7888 -2.9491 -0.2583 10 7 4.2752 -3.6834 0.7182 11 14 2.6986 -3.7287 -1.5595 12 1 3.5395 -4.2195 -2.6807 13 1 1.7355 -2.7192 -2.0680 14 1 1.9540 -4.8673 -0.9640 15 6 3.5302 1.4583 -2.4064 16 1 2.4463 1.4190 -2.5154 17 6 4.0180 2.8768 -2.2699 18 6 3.3919 3.8526 -2.7696 19 6 4.1016 5.0630 -3.3185 20 6 4.2581 4.6179 -4.7962 21 6 4.9406 3.2346 -4.8588 22 6 3.9194 2.0987 -4.8265 23 6 4.2464 1.0671 -3.7256 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8482 0.5272 0.8106 30 1 3.9781 2.1707 0.1396 31 1 3.8729 -1.1527 -2.3970 32 1 2.4366 -0.7921 -1.4095 33 1 4.0682 -4.6300 0.7626 34 1 4.9331 3.0655 -1.7283 35 1 2.3130 3.8184 -2.8037 36 1 5.0710 5.2062 -2.8413 37 1 3.4853 5.9582 -3.2357 38 1 4.8670 5.3467 -5.3312 39 1 3.2746 4.5579 -5.2623 40 1 5.6139 3.1315 -4.0078 41 1 5.5193 3.1662 -5.7799 42 1 3.9155 1.5968 -5.7940 43 1 2.9298 2.5158 -4.6400 44 1 5.3234 1.0436 -3.5597 45 1 3.9074 0.0810 -4.0430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305961859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:38 Heat of formation + Delta-G solvation = -5.441783 kcal Electronic energy + Delta-G solvation = -22172.540231 eV Core-core repulsion = 19191.433672 eV Total energy + Delta-G solvation = -2981.106559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45274 -37.69544 -35.72358 -32.77166 -32.54394 -31.67179 -29.20095 -27.17600 -26.22880 -25.51426 -24.29095 -22.39260 -20.92387 -20.73009 -19.13683 -18.73800 -16.82395 -16.08627 -15.81631 -15.39001 -15.17547 -14.83423 -14.34368 -14.05721 -13.64528 -13.37350 -12.91139 -12.66354 -12.35971 -12.30447 -12.21096 -11.90098 -11.78278 -11.62229 -11.33341 -11.21057 -10.82364 -10.74057 -10.64659 -10.60769 -10.37610 -10.30877 -10.15306 -9.71089 -9.64160 -9.05670 -9.01470 -8.36233 -8.34464 -7.16873 -5.86563 -3.79026 2.44660 3.39719 3.46405 3.51649 4.34262 4.59465 4.66852 4.78913 4.96848 5.00745 5.16345 5.38827 5.42974 5.49141 5.52073 5.55253 5.58045 5.66580 5.73215 5.75898 5.78313 5.80691 5.89942 5.94651 6.00189 6.02291 6.04281 6.15567 6.21720 6.25270 6.36227 6.41568 6.54172 6.67528 6.77340 6.91648 7.07135 7.23567 7.44617 7.74989 7.80397 8.07495 8.22521 8.84461 9.19911 9.77581 11.27397 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.006195 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.294583 B = 4518.544077 C = 5056.194861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.346 6.346 3 C 0.027 3.973 4 C 0.066 3.934 5 N -0.515 5.515 6 C 0.151 3.849 7 C -0.486 4.486 8 H 0.076 0.924 9 C 0.069 3.931 10 N -0.910 5.910 11 Si 0.871 3.129 12 H -0.281 1.281 13 H -0.266 1.266 14 H -0.291 1.291 15 C 0.110 3.890 16 H 0.043 0.957 17 C -0.129 4.129 18 C -0.187 4.187 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.028 0.972 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 15.994 -8.538 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.264 6.264 3 C -0.052 4.052 4 C -0.063 4.063 5 N -0.237 5.237 6 C 0.025 3.975 7 C -0.524 4.524 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.550 5.550 11 Si 0.699 3.301 12 H -0.207 1.207 13 H -0.191 1.191 14 H -0.217 1.217 15 C 0.001 3.999 16 H 0.061 0.939 17 C -0.147 4.147 18 C -0.205 4.205 19 C -0.120 4.120 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.143 4.143 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.565 15.614 -8.493 18.128 hybrid contribution -1.830 -0.356 -0.583 1.953 sum -5.394 15.258 -9.076 18.555 Atomic orbital electron populations 1.22692 0.83802 1.02138 0.98569 1.88444 1.17250 1.26197 1.94546 1.23326 0.97567 0.85595 0.98667 1.22211 0.89323 0.99830 0.94922 1.62133 1.58649 1.03566 0.99370 1.20455 0.95916 0.84017 0.97103 1.20934 1.29376 0.92621 1.09508 0.90626 1.24779 0.95738 0.97163 0.95425 1.69895 1.46213 1.06630 1.32293 0.86916 0.81666 0.79052 0.82425 1.20742 1.19058 1.21682 1.21271 0.95822 0.90337 0.92437 0.93949 1.21444 1.01891 0.94005 0.97406 1.21146 0.99031 0.97078 1.03273 1.21216 0.99775 0.95676 0.95298 1.22239 1.00471 0.96571 0.95673 1.21897 0.98291 0.93706 1.01621 1.21874 0.99336 0.95997 0.98111 1.22254 1.01504 0.97788 0.92731 0.94951 0.95314 0.90181 0.94456 0.94428 0.88208 0.91219 0.96714 0.95503 0.93101 0.87657 0.88855 0.91167 0.91531 0.92642 0.92093 0.91186 0.92946 0.92881 0.91923 0.90790 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.35 -7.18 7.38 -35.23 -0.26 -7.44 16 3 C 0.03 0.48 5.76 37.16 0.21 0.69 16 4 C 0.07 1.25 5.36 -3.83 -0.02 1.23 16 5 N -0.51 -10.58 4.64 -228.16 -1.06 -11.64 16 6 C 0.15 3.68 3.15 -4.98 -0.02 3.66 16 7 C -0.49 -13.92 8.82 -34.44 -0.30 -14.22 16 8 H 0.08 2.35 6.94 -52.49 -0.36 1.99 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 11 Si 0.87 22.36 27.47 -169.99 -4.67 17.69 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.11 1.86 1.53 -67.78 -0.10 1.76 16 16 H 0.04 0.76 6.63 -51.93 -0.34 0.41 16 17 C -0.13 -1.82 4.66 -35.11 -0.16 -1.98 16 18 C -0.19 -2.26 6.30 -35.09 -0.22 -2.48 16 19 C -0.08 -0.82 6.69 -26.78 -0.18 -1.00 16 20 C -0.11 -1.09 5.70 -24.89 -0.14 -1.24 16 21 C -0.12 -1.32 5.20 -26.12 -0.14 -1.46 16 22 C -0.12 -1.46 5.20 -26.13 -0.14 -1.60 16 23 C -0.10 -1.66 4.87 -24.89 -0.12 -1.78 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.62 6.14 -51.93 -0.32 0.31 16 29 H 0.10 2.22 6.27 -51.93 -0.33 1.89 16 30 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 31 H 0.01 0.37 6.22 -51.93 -0.32 0.05 16 32 H 0.03 0.69 4.35 -51.93 -0.23 0.47 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.11 1.54 7.94 -52.49 -0.42 1.12 16 35 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.07 0.86 6.05 -51.93 -0.31 0.55 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.79 5.98 -51.93 -0.31 0.48 16 44 H 0.07 1.22 7.65 -51.93 -0.40 0.82 16 45 H 0.06 1.04 7.18 -51.93 -0.37 0.67 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -31.03 329.69 -8.43 -39.46 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.88 Total: -0.29 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.31 Total: -14.96 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.29 Total: -39.44 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.26 Total: -7.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.03 -8.43 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305961859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.021 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds