Wall clock time and date at job start Mon Mar 30 2020 08:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00388 * 2 1 4 4 C 1.52997 * 109.47554 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47277 * 67.84483 * 4 3 2 6 6 C 1.46902 * 111.00096 * 293.74169 * 5 4 3 7 7 C 1.50691 * 109.46930 * 300.20100 * 6 5 4 8 8 H 1.07995 * 120.00417 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99909 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99799 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47574 * 89.99832 * 11 9 7 13 13 H 1.48503 * 109.47128 * 329.99830 * 11 9 7 14 14 H 1.48502 * 109.47153 * 209.99964 * 11 9 7 15 15 C 1.46900 * 110.99765 * 57.69683 * 5 4 3 16 16 H 1.09007 * 111.20330 * 292.33301 * 15 5 4 17 17 C 1.50629 * 111.41136 * 57.26853 * 15 5 4 18 18 C 1.26242 * 122.10312 * 207.56380 * 17 15 5 19 19 C 1.50665 * 122.11015 * 214.17478 * 18 17 15 20 20 C 1.55115 * 99.44392 * 91.23648 * 19 18 17 21 21 C 1.54379 * 109.89653 * 306.57346 * 20 19 18 22 22 C 1.52774 * 111.70396 * 89.99408 * 21 20 19 23 23 C 1.54375 * 111.73441 * 232.39905 * 22 21 20 24 24 H 1.09004 * 109.47202 * 300.00191 * 1 2 3 25 25 H 1.08997 * 109.47021 * 60.00052 * 1 2 3 26 26 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 59.99536 * 3 2 1 28 28 H 1.09001 * 109.47054 * 300.00011 * 3 2 1 29 29 H 1.09005 * 109.47179 * 307.84670 * 4 3 2 30 30 H 1.08996 * 109.47514 * 187.84594 * 4 3 2 31 31 H 1.09001 * 109.47037 * 180.19991 * 6 5 4 32 32 H 1.08999 * 109.46683 * 60.20182 * 6 5 4 33 33 H 0.97000 * 120.00357 * 180.02562 * 10 9 7 34 34 H 1.07995 * 118.96860 * 27.63509 * 17 15 5 35 35 H 1.08004 * 118.91396 * 34.22549 * 18 17 15 36 36 H 1.09002 * 111.40667 * 333.67298 * 19 18 17 37 37 H 1.09001 * 111.45700 * 208.82039 * 19 18 17 38 38 H 1.09003 * 109.39383 * 186.44157 * 20 19 18 39 39 H 1.09002 * 109.39821 * 66.71060 * 20 19 18 40 40 H 1.09007 * 109.03411 * 329.41999 * 21 20 19 41 41 H 1.09002 * 108.97626 * 210.53047 * 21 20 19 42 42 H 1.08998 * 109.02370 * 111.82244 * 22 21 20 43 43 H 1.08996 * 109.02555 * 352.97987 * 22 21 20 44 44 H 1.09003 * 109.40786 * 330.73091 * 23 22 21 45 45 H 1.09003 * 109.33103 * 210.94526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9818 0.6255 -1.2837 6 6 3.5257 -0.7621 -1.4405 7 6 4.0836 -1.6036 -0.3218 8 1 4.7135 -1.1528 0.4306 9 6 3.7888 -2.9491 -0.2583 10 7 4.2752 -3.6834 0.7182 11 14 2.6986 -3.7287 -1.5595 12 1 3.5395 -4.2195 -2.6807 13 1 1.7355 -2.7192 -2.0680 14 1 1.9540 -4.8673 -0.9640 15 6 3.5302 1.4583 -2.4064 16 1 2.4463 1.4190 -2.5154 17 6 4.0180 2.8768 -2.2699 18 6 3.3919 3.8526 -2.7696 19 6 4.1016 5.0630 -3.3185 20 6 4.2581 4.6179 -4.7962 21 6 4.9406 3.2346 -4.8588 22 6 3.9194 2.0987 -4.8265 23 6 4.2464 1.0671 -3.7256 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8482 0.5272 0.8106 30 1 3.9781 2.1707 0.1396 31 1 3.8729 -1.1527 -2.3970 32 1 2.4366 -0.7921 -1.4095 33 1 4.0682 -4.6300 0.7626 34 1 4.9331 3.0655 -1.7283 35 1 2.3130 3.8184 -2.8037 36 1 5.0710 5.2062 -2.8413 37 1 3.4853 5.9582 -3.2357 38 1 4.8670 5.3467 -5.3312 39 1 3.2746 4.5579 -5.2623 40 1 5.6139 3.1315 -4.0078 41 1 5.5193 3.1662 -5.7799 42 1 3.9155 1.5968 -5.7940 43 1 2.9298 2.5158 -4.6400 44 1 5.3234 1.0436 -3.5597 45 1 3.9074 0.0810 -4.0430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305961859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:37 Heat of formation + Delta-G solvation = -25.405278 kcal Electronic energy + Delta-G solvation = -22173.405913 eV Core-core repulsion = 19191.433672 eV Total energy + Delta-G solvation = -2981.972241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70265 -39.01067 -37.16097 -34.65647 -33.74108 -33.00707 -30.88937 -28.83840 -27.40068 -26.69868 -25.65168 -24.11086 -22.38800 -21.64798 -20.45180 -19.94523 -18.90825 -17.55460 -17.23777 -16.59365 -16.47673 -16.21637 -15.81115 -15.67208 -15.21862 -14.54654 -14.38707 -13.99426 -13.73642 -13.66022 -13.43804 -13.20418 -13.06691 -13.02656 -12.75982 -12.69120 -12.43535 -12.18329 -11.88671 -11.87989 -11.72627 -11.68745 -11.56522 -11.34240 -11.08908 -10.80898 -10.69836 -10.38132 -9.40680 -8.80866 -8.16627 -6.13105 1.34465 1.36007 1.40915 1.48242 2.42462 2.96973 3.19799 3.30913 3.77060 3.93836 4.03298 4.16310 4.23878 4.25990 4.33744 4.44401 4.48594 4.49592 4.52088 4.53664 4.60014 4.69975 4.78220 4.81384 4.83979 4.95627 5.01554 5.05326 5.10762 5.17867 5.27537 5.29522 5.32606 5.40666 5.50029 5.52057 5.61114 5.69483 5.87668 6.06997 6.19224 6.40558 6.51142 6.82738 6.89935 7.47390 9.00734 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.006195 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.294583 B = 4518.544077 C = 5056.194861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.032 3.968 4 C 0.068 3.932 5 N -0.530 5.530 6 C 0.167 3.833 7 C -0.482 4.482 8 H 0.034 0.966 9 C 0.009 3.991 10 N -0.957 5.957 11 Si 0.937 3.063 12 H -0.273 1.273 13 H -0.252 1.252 14 H -0.286 1.286 15 C 0.112 3.888 16 H 0.039 0.961 17 C -0.147 4.147 18 C -0.159 4.159 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.107 4.107 23 C -0.104 4.104 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.008 0.992 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 18.535 -10.724 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.311 6.311 3 C -0.046 4.046 4 C -0.060 4.060 5 N -0.253 5.253 6 C 0.040 3.960 7 C -0.521 4.521 8 H 0.052 0.948 9 C -0.187 4.187 10 N -0.600 5.600 11 Si 0.762 3.238 12 H -0.198 1.198 13 H -0.175 1.175 14 H -0.212 1.212 15 C 0.004 3.996 16 H 0.057 0.943 17 C -0.165 4.165 18 C -0.178 4.178 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.142 4.142 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.160 18.189 -10.688 21.719 hybrid contribution -1.290 -1.049 0.151 1.669 sum -6.449 17.140 -10.538 21.129 Atomic orbital electron populations 1.22853 0.81624 1.02610 1.00507 1.88343 1.19840 1.28031 1.94903 1.23292 0.95954 0.84950 1.00373 1.22126 0.91140 0.99857 0.92899 1.62001 1.59468 1.02462 1.01329 1.20109 0.95350 0.85893 0.94651 1.21168 1.28144 0.93213 1.09582 0.94751 1.25631 0.97446 0.97856 0.97732 1.70052 1.48288 1.07038 1.34640 0.85856 0.80005 0.78259 0.79647 1.19818 1.17543 1.21237 1.21243 0.95506 0.91521 0.91338 0.94346 1.21080 1.02154 0.92923 1.00361 1.21362 0.99258 0.97112 1.00024 1.21313 0.99990 0.95347 0.95080 1.22210 1.00993 0.95799 0.95563 1.21887 0.97863 0.94129 1.01627 1.21810 0.99907 0.95713 0.97013 1.22268 1.00455 0.97992 0.93526 0.92860 0.93412 0.90566 0.92301 0.92804 0.92477 0.88583 0.97395 0.95620 0.93043 0.88441 0.88311 0.90993 0.89479 0.90803 0.91450 0.92468 0.91935 0.92059 0.91528 0.92142 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.88 16 2 O -0.39 -16.07 7.38 -148.98 -1.10 -17.17 16 3 C 0.03 1.10 5.76 71.98 0.41 1.52 16 4 C 0.07 2.64 5.36 86.30 0.46 3.10 16 5 N -0.53 -22.18 4.64 -875.77 -4.07 -26.24 16 6 C 0.17 8.30 3.15 85.55 0.27 8.57 16 7 C -0.48 -28.84 8.82 25.60 0.23 -28.62 16 8 H 0.03 2.28 6.94 -2.91 -0.02 2.26 16 9 C 0.01 0.53 5.47 84.66 0.46 0.99 16 10 N -0.96 -62.38 13.96 21.45 0.30 -62.08 16 11 Si 0.94 46.90 27.47 68.60 1.88 48.78 16 12 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 15 C 0.11 3.71 1.53 44.87 0.07 3.78 16 16 H 0.04 1.31 6.63 -2.38 -0.02 1.30 16 17 C -0.15 -3.88 4.66 29.66 0.14 -3.74 16 18 C -0.16 -3.34 6.30 29.67 0.19 -3.16 16 19 C -0.08 -1.28 6.69 30.56 0.20 -1.08 16 20 C -0.11 -1.68 5.70 31.79 0.18 -1.49 16 21 C -0.12 -2.32 5.20 30.99 0.16 -2.16 16 22 C -0.11 -2.48 5.20 30.99 0.16 -2.31 16 23 C -0.10 -3.26 4.87 31.79 0.15 -3.11 16 24 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.05 1.66 6.14 -2.39 -0.01 1.65 16 29 H 0.06 2.69 6.27 -2.38 -0.01 2.68 16 30 H 0.10 3.14 7.13 -2.39 -0.02 3.12 16 31 H 0.01 0.41 6.22 -2.39 -0.01 0.40 16 32 H 0.03 1.33 4.35 -2.39 -0.01 1.32 16 33 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 34 H 0.10 2.75 7.94 -2.91 -0.02 2.73 16 35 H 0.10 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 40 H 0.06 1.30 6.05 -2.38 -0.01 1.29 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.49 5.98 -2.39 -0.01 1.48 16 44 H 0.06 2.02 7.65 -2.39 -0.02 2.00 16 45 H 0.04 1.39 7.18 -2.39 -0.02 1.37 16 Total: -1.00 -69.85 329.69 2.24 -67.61 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.88 Total: 14.94 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.34 Total: -25.84 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -3.77 Total: -88.33 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.10 Total: -17.17 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.78 kcal Total: -69.85 2.24 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305961859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.201 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds