Wall clock time and date at job start Mon Mar 30 2020 08:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42890 * 114.00181 * 2 1 4 4 C 1.53000 * 109.47532 * 184.85792 * 3 2 1 5 5 N 1.46898 * 109.46951 * 76.19338 * 4 3 2 6 6 C 1.46904 * 111.00141 * 285.21671 * 5 4 3 7 7 C 1.50705 * 109.47315 * 158.95729 * 6 5 4 8 8 H 1.08007 * 119.99563 * 2.06855 * 7 6 5 9 9 C 1.37869 * 120.00159 * 182.06682 * 7 6 5 10 10 N 1.31520 * 120.00108 * 354.91379 * 9 7 6 11 11 Si 1.86798 * 120.00132 * 174.91608 * 9 7 6 12 12 H 1.48493 * 109.47044 * 5.00041 * 11 9 7 13 13 H 1.48494 * 109.47185 * 125.00317 * 11 9 7 14 14 H 1.48503 * 109.47245 * 244.99994 * 11 9 7 15 15 C 1.46902 * 111.00226 * 161.25945 * 5 4 3 16 16 H 1.08993 * 108.84956 * 311.44687 * 15 5 4 17 17 C 1.48681 * 108.87275 * 70.00116 * 15 5 4 18 18 C 1.28221 * 136.19581 * 121.98102 * 17 15 5 19 19 C 1.51335 * 121.78668 * 5.93111 * 18 17 15 20 20 C 1.53695 * 106.71220 * 78.53680 * 19 18 17 21 21 C 1.52570 * 109.53931 * 305.53375 * 20 19 18 22 22 C 1.51519 * 106.59758 * 295.61519 * 21 20 19 23 23 C 1.52704 * 112.94866 * 82.08600 * 22 21 20 24 24 H 1.08993 * 109.47269 * 64.95824 * 1 2 3 25 25 H 1.09004 * 109.47157 * 184.96686 * 1 2 3 26 26 H 1.08999 * 109.46396 * 304.95862 * 1 2 3 27 27 H 1.09006 * 109.47017 * 64.85618 * 3 2 1 28 28 H 1.09008 * 109.47580 * 304.86263 * 3 2 1 29 29 H 1.08997 * 109.46783 * 316.19923 * 4 3 2 30 30 H 1.08998 * 109.47676 * 196.19415 * 4 3 2 31 31 H 1.09003 * 109.47060 * 278.95755 * 6 5 4 32 32 H 1.08997 * 109.47314 * 38.95900 * 6 5 4 33 33 H 0.96999 * 120.00176 * 179.97438 * 10 9 7 34 34 H 1.08002 * 111.90373 * 301.67183 * 17 15 5 35 35 H 1.08003 * 119.12341 * 186.16757 * 18 17 15 36 36 H 1.08989 * 110.07135 * 319.22918 * 19 18 17 37 37 H 1.09000 * 110.10370 * 197.85055 * 19 18 17 38 38 H 1.09001 * 109.46081 * 185.51580 * 20 19 18 39 39 H 1.09001 * 109.46340 * 65.55049 * 20 19 18 40 40 H 1.08998 * 110.02304 * 176.34945 * 21 20 19 41 41 H 1.09004 * 110.02663 * 54.88720 * 21 20 19 42 42 H 1.08998 * 108.79142 * 321.19216 * 22 21 20 43 43 H 1.09000 * 108.78698 * 202.97549 * 22 21 20 44 44 H 1.09004 * 109.35566 * 277.28640 * 23 22 21 45 45 H 1.08998 * 109.35536 * 157.70060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1222 5 7 3.8869 0.8657 -1.5107 6 6 3.5875 -0.5389 -1.8198 7 6 3.4644 -0.7097 -3.3121 8 1 3.6284 0.1330 -3.9674 9 6 3.1425 -1.9417 -3.8407 10 7 3.0411 -2.9894 -3.0522 11 14 2.8504 -2.1228 -5.6767 12 1 3.1416 -0.8337 -6.3538 13 1 3.7428 -3.1790 -6.2181 14 1 1.4344 -2.4998 -5.9179 15 6 5.2982 1.1742 -1.7771 16 1 5.5139 2.1787 -1.4131 17 6 6.1500 0.2027 -1.0412 18 6 7.0537 -0.6535 -1.3480 19 6 7.5905 -0.7757 -2.7577 20 6 8.5919 0.3741 -2.9505 21 6 7.9147 1.7012 -2.6217 22 6 6.8141 1.8908 -3.6456 23 6 5.5359 1.1333 -3.2930 24 1 -0.3633 0.4350 -0.9310 25 1 -0.3634 -1.0238 0.0890 26 1 -0.3632 0.5889 0.8423 27 1 1.7592 1.8149 0.9303 28 1 1.6215 1.8763 -0.8433 29 1 3.8875 0.3950 0.5366 30 1 3.9931 2.1319 0.1623 31 1 4.3922 -1.1725 -1.4467 32 1 2.6498 -0.8240 -1.3429 33 1 2.8143 -3.8561 -3.4240 34 1 5.9627 0.2274 0.0221 35 1 7.4399 -1.3080 -0.5805 36 1 6.7766 -0.6853 -3.4769 37 1 8.0946 -1.7337 -2.8849 38 1 8.9343 0.3878 -3.9853 39 1 9.4449 0.2278 -2.2878 40 1 8.6354 2.5158 -2.6933 41 1 7.4893 1.6647 -1.6188 42 1 7.1722 1.5429 -4.6146 43 1 6.5831 2.9534 -3.7201 44 1 5.6295 0.0965 -3.6163 45 1 4.6904 1.5940 -3.8038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310068024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:45 Heat of formation + Delta-G solvation = -10.612951 kcal Electronic energy + Delta-G solvation = -22451.970164 eV Core-core repulsion = 19470.639366 eV Total energy + Delta-G solvation = -2981.330797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.38595 -37.46942 -35.60841 -32.53153 -32.30910 -31.19306 -28.79074 -27.11477 -26.53237 -25.64534 -24.23849 -22.22140 -20.85841 -20.08270 -19.82297 -17.44238 -16.48905 -15.92075 -15.64846 -15.21547 -14.90181 -14.59511 -14.30701 -13.92328 -13.49502 -13.38058 -13.32205 -12.33310 -12.27061 -11.93146 -11.79259 -11.36671 -11.27463 -11.17774 -11.15121 -11.00976 -10.88735 -10.68749 -10.52238 -10.39512 -10.29699 -10.15678 -9.60907 -9.39677 -9.17385 -9.06850 -8.69901 -8.24506 -8.17555 -7.16405 -5.83417 -3.79485 2.98520 3.37959 3.46137 3.49595 4.37448 4.55047 5.00117 5.19026 5.36196 5.40808 5.49988 5.52749 5.57719 5.72931 5.76810 5.80241 5.81734 5.83259 5.86840 5.96334 6.01245 6.10926 6.14783 6.16567 6.21882 6.39078 6.43953 6.45356 6.50889 6.59920 6.67904 6.68195 6.81165 7.06109 7.23758 7.46569 7.60707 7.67257 7.70688 7.78086 8.01230 8.38466 8.46591 8.75403 9.26605 9.79542 11.27226 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.009163 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.626558 B = 3055.111036 C = 4443.782872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.070 3.930 4 C 0.053 3.947 5 N -0.525 5.525 6 C 0.176 3.824 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.896 5.896 11 Si 0.882 3.118 12 H -0.273 1.273 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.138 3.862 16 H 0.062 0.938 17 C -0.160 4.160 18 C -0.137 4.137 19 C -0.108 4.108 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.112 4.112 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.000 1.000 32 H 0.060 0.940 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 8.792 4.213 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C -0.007 4.007 4 C -0.076 4.076 5 N -0.248 5.248 6 C 0.051 3.949 7 C -0.533 4.533 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.711 3.289 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.213 1.213 15 C 0.030 3.970 16 H 0.080 0.920 17 C -0.180 4.180 18 C -0.156 4.156 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.149 4.149 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.401 8.747 3.915 10.545 hybrid contribution 0.044 -0.669 -0.280 0.726 sum 4.446 8.078 3.635 9.912 Atomic orbital electron populations 1.22618 0.82389 1.02033 0.99057 1.88078 1.18606 1.27434 1.94913 1.22508 0.94284 0.85107 0.98772 1.22059 0.93648 0.99620 0.92263 1.62732 1.15973 1.27874 1.18228 1.20137 0.97637 0.80370 0.96719 1.21453 1.45092 0.94739 0.92046 0.91402 1.24922 0.96494 0.96103 0.97085 1.70000 1.49769 0.99483 1.34403 0.86696 0.77765 0.77845 0.86641 1.19768 1.21500 1.21307 1.20117 0.86689 0.94780 0.95414 0.92028 1.21733 0.96925 0.99657 0.99669 1.21740 0.98669 0.97786 0.97420 1.21296 0.99531 0.97198 0.96459 1.21579 0.97571 0.95240 1.00263 1.21545 0.97544 0.96440 1.01205 1.21380 0.96294 0.99712 0.98511 1.22077 0.95193 1.02809 0.94832 0.94254 0.90227 0.95302 0.94517 0.92523 0.94684 0.91313 0.98191 0.92266 0.93490 0.92007 0.88642 0.88366 0.92539 0.92534 0.93209 0.93050 0.90179 0.92800 0.93635 0.88352 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.01 101.05 1.11 1.69 16 2 O -0.37 -7.49 8.14 -35.23 -0.29 -7.78 16 3 C 0.07 1.22 6.13 37.16 0.23 1.45 16 4 C 0.05 0.96 4.81 -3.83 -0.02 0.94 16 5 N -0.52 -11.10 4.35 -230.33 -1.00 -12.10 16 6 C 0.18 4.53 4.38 -4.97 -0.02 4.50 16 7 C -0.49 -13.50 7.16 -34.44 -0.25 -13.74 16 8 H 0.07 1.82 5.29 -52.48 -0.28 1.54 16 9 C 0.05 1.53 5.45 -17.82 -0.10 1.43 16 10 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 11 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 C 0.14 2.60 1.66 -69.57 -0.12 2.48 16 16 H 0.06 1.06 7.23 -51.93 -0.38 0.68 16 17 C -0.16 -2.97 4.38 -36.28 -0.16 -3.13 16 18 C -0.14 -2.46 8.84 -35.01 -0.31 -2.77 16 19 C -0.11 -1.84 5.77 -27.21 -0.16 -2.00 16 20 C -0.11 -1.55 5.47 -26.59 -0.15 -1.69 16 21 C -0.13 -1.84 5.65 -27.70 -0.16 -2.00 16 22 C -0.12 -1.86 5.23 -27.63 -0.14 -2.00 16 23 C -0.11 -2.12 3.25 -26.63 -0.09 -2.21 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.03 0.68 7.35 -51.93 -0.38 0.30 16 30 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 31 H 0.00 0.01 6.26 -51.93 -0.33 -0.32 16 32 H 0.06 1.68 5.15 -51.93 -0.27 1.41 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 1.14 7.01 -52.49 -0.37 0.77 16 35 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.10 1.93 4.48 -51.94 -0.23 1.69 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.21 4.29 -51.93 -0.22 0.99 16 42 H 0.05 0.80 7.62 -51.93 -0.40 0.41 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 2.13 3.52 -51.93 -0.18 1.95 16 45 H 0.07 1.46 6.93 -51.93 -0.36 1.10 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -29.94 326.19 -8.53 -38.48 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.56 Total: 2.92 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.32 Total: -17.05 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.26 Total: -38.20 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.29 Total: -7.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.94 -8.53 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310068024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.864 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds