Wall clock time and date at job start Mon Mar 30 2020 08:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42890 * 114.00181 * 2 1 4 4 C 1.53000 * 109.47532 * 184.85792 * 3 2 1 5 5 N 1.46898 * 109.46951 * 76.19338 * 4 3 2 6 6 C 1.46904 * 111.00141 * 285.21671 * 5 4 3 7 7 C 1.50705 * 109.47315 * 158.95729 * 6 5 4 8 8 H 1.08007 * 119.99563 * 2.06855 * 7 6 5 9 9 C 1.37869 * 120.00159 * 182.06682 * 7 6 5 10 10 N 1.31520 * 120.00108 * 354.91379 * 9 7 6 11 11 Si 1.86798 * 120.00132 * 174.91608 * 9 7 6 12 12 H 1.48493 * 109.47044 * 5.00041 * 11 9 7 13 13 H 1.48494 * 109.47185 * 125.00317 * 11 9 7 14 14 H 1.48503 * 109.47245 * 244.99994 * 11 9 7 15 15 C 1.46902 * 111.00226 * 161.25945 * 5 4 3 16 16 H 1.08993 * 108.84956 * 311.44687 * 15 5 4 17 17 C 1.48681 * 108.87275 * 70.00116 * 15 5 4 18 18 C 1.28221 * 136.19581 * 121.98102 * 17 15 5 19 19 C 1.51335 * 121.78668 * 5.93111 * 18 17 15 20 20 C 1.53695 * 106.71220 * 78.53680 * 19 18 17 21 21 C 1.52570 * 109.53931 * 305.53375 * 20 19 18 22 22 C 1.51519 * 106.59758 * 295.61519 * 21 20 19 23 23 C 1.52704 * 112.94866 * 82.08600 * 22 21 20 24 24 H 1.08993 * 109.47269 * 64.95824 * 1 2 3 25 25 H 1.09004 * 109.47157 * 184.96686 * 1 2 3 26 26 H 1.08999 * 109.46396 * 304.95862 * 1 2 3 27 27 H 1.09006 * 109.47017 * 64.85618 * 3 2 1 28 28 H 1.09008 * 109.47580 * 304.86263 * 3 2 1 29 29 H 1.08997 * 109.46783 * 316.19923 * 4 3 2 30 30 H 1.08998 * 109.47676 * 196.19415 * 4 3 2 31 31 H 1.09003 * 109.47060 * 278.95755 * 6 5 4 32 32 H 1.08997 * 109.47314 * 38.95900 * 6 5 4 33 33 H 0.96999 * 120.00176 * 179.97438 * 10 9 7 34 34 H 1.08002 * 111.90373 * 301.67183 * 17 15 5 35 35 H 1.08003 * 119.12341 * 186.16757 * 18 17 15 36 36 H 1.08989 * 110.07135 * 319.22918 * 19 18 17 37 37 H 1.09000 * 110.10370 * 197.85055 * 19 18 17 38 38 H 1.09001 * 109.46081 * 185.51580 * 20 19 18 39 39 H 1.09001 * 109.46340 * 65.55049 * 20 19 18 40 40 H 1.08998 * 110.02304 * 176.34945 * 21 20 19 41 41 H 1.09004 * 110.02663 * 54.88720 * 21 20 19 42 42 H 1.08998 * 108.79142 * 321.19216 * 22 21 20 43 43 H 1.09000 * 108.78698 * 202.97549 * 22 21 20 44 44 H 1.09004 * 109.35566 * 277.28640 * 23 22 21 45 45 H 1.08998 * 109.35536 * 157.70060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1222 5 7 3.8869 0.8657 -1.5107 6 6 3.5875 -0.5389 -1.8198 7 6 3.4644 -0.7097 -3.3121 8 1 3.6284 0.1330 -3.9674 9 6 3.1425 -1.9417 -3.8407 10 7 3.0411 -2.9894 -3.0522 11 14 2.8504 -2.1228 -5.6767 12 1 3.1416 -0.8337 -6.3538 13 1 3.7428 -3.1790 -6.2181 14 1 1.4344 -2.4998 -5.9179 15 6 5.2982 1.1742 -1.7771 16 1 5.5139 2.1787 -1.4131 17 6 6.1500 0.2027 -1.0412 18 6 7.0537 -0.6535 -1.3480 19 6 7.5905 -0.7757 -2.7577 20 6 8.5919 0.3741 -2.9505 21 6 7.9147 1.7012 -2.6217 22 6 6.8141 1.8908 -3.6456 23 6 5.5359 1.1333 -3.2930 24 1 -0.3633 0.4350 -0.9310 25 1 -0.3634 -1.0238 0.0890 26 1 -0.3632 0.5889 0.8423 27 1 1.7592 1.8149 0.9303 28 1 1.6215 1.8763 -0.8433 29 1 3.8875 0.3950 0.5366 30 1 3.9931 2.1319 0.1623 31 1 4.3922 -1.1725 -1.4467 32 1 2.6498 -0.8240 -1.3429 33 1 2.8143 -3.8561 -3.4240 34 1 5.9627 0.2274 0.0221 35 1 7.4399 -1.3080 -0.5805 36 1 6.7766 -0.6853 -3.4769 37 1 8.0946 -1.7337 -2.8849 38 1 8.9343 0.3878 -3.9853 39 1 9.4449 0.2278 -2.2878 40 1 8.6354 2.5158 -2.6933 41 1 7.4893 1.6647 -1.6188 42 1 7.1722 1.5429 -4.6146 43 1 6.5831 2.9534 -3.7201 44 1 5.6295 0.0965 -3.6163 45 1 4.6904 1.5940 -3.8038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310068024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:44 Heat of formation + Delta-G solvation = -28.930165 kcal Electronic energy + Delta-G solvation = -22452.764458 eV Core-core repulsion = 19470.639366 eV Total energy + Delta-G solvation = -2982.125091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84394 -38.87953 -37.11320 -34.57344 -33.75362 -32.57160 -30.46463 -28.75823 -28.00353 -26.99409 -25.85056 -23.97982 -22.27986 -21.61929 -21.13279 -18.94926 -18.37094 -17.36569 -17.30347 -16.61028 -16.52350 -16.18962 -15.84220 -15.36413 -14.90546 -14.81335 -14.76892 -14.15962 -13.85092 -13.45691 -13.26239 -13.03314 -12.75763 -12.68862 -12.52992 -12.49420 -12.43869 -12.38434 -12.10531 -11.97682 -11.68529 -11.63642 -11.24308 -11.01744 -10.72705 -10.62776 -10.38977 -10.20796 -9.70537 -8.90090 -8.01188 -6.02906 1.40392 1.42527 1.53281 1.54205 2.48713 3.04340 3.32402 3.46770 3.83266 4.08935 4.16514 4.25298 4.29455 4.36597 4.40302 4.45166 4.47372 4.51808 4.57962 4.62811 4.63957 4.76022 4.87024 4.88807 4.97602 5.00345 5.13694 5.19446 5.23420 5.27434 5.32181 5.44124 5.49562 5.56915 5.64863 5.71111 5.81567 5.90170 6.00061 6.19968 6.34568 6.42879 6.65469 6.83159 7.11931 7.60454 9.09713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.009163 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.626558 B = 3055.111036 C = 4443.782872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.413 6.413 3 C 0.070 3.930 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.197 3.803 7 C -0.492 4.492 8 H 0.070 0.930 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.944 3.056 12 H -0.262 1.262 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.139 3.861 16 H 0.086 0.914 17 C -0.168 4.168 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.108 4.108 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.104 0.896 31 H -0.033 1.033 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 10.873 4.027 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.333 6.333 3 C -0.007 4.007 4 C -0.078 4.078 5 N -0.255 5.255 6 C 0.072 3.928 7 C -0.531 4.531 8 H 0.088 0.912 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.771 3.229 12 H -0.186 1.186 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.031 3.969 16 H 0.104 0.896 17 C -0.188 4.188 18 C -0.161 4.161 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.145 4.145 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.123 0.877 31 H -0.015 1.015 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.369 10.859 3.727 12.675 hybrid contribution -0.257 -1.298 -0.162 1.333 sum 5.112 9.561 3.565 11.413 Atomic orbital electron populations 1.22747 0.80630 1.02650 1.00319 1.88018 1.20774 1.29288 1.95207 1.22628 0.93370 0.84298 1.00397 1.22225 0.94808 1.00609 0.90115 1.62650 1.17870 1.24531 1.20419 1.19677 0.95093 0.82598 0.95481 1.21751 1.43619 0.94622 0.93072 0.91224 1.25686 0.96627 0.95934 1.01309 1.70140 1.51400 0.99917 1.36346 0.85708 0.77427 0.78116 0.81674 1.18575 1.21288 1.21200 1.20197 0.85358 0.95924 0.95441 0.89591 1.21704 0.97314 1.00281 0.99519 1.21969 0.98612 0.97296 0.98233 1.21287 0.99491 0.98888 0.95036 1.21550 0.97042 0.93938 1.01470 1.21533 0.97523 0.97207 1.00088 1.21300 0.94874 0.99986 0.99081 1.21935 0.96529 1.01326 0.94701 0.94600 0.90459 0.91904 0.90780 0.93073 0.96376 0.87748 1.01513 0.94912 0.93682 0.92220 0.87937 0.91108 0.92304 0.91306 0.91588 0.90291 0.91037 0.92417 0.91968 0.91433 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.41 -16.79 8.14 -148.98 -1.21 -18.00 16 3 C 0.07 2.33 6.13 71.98 0.44 2.77 16 4 C 0.05 1.80 4.81 86.30 0.42 2.22 16 5 N -0.53 -22.54 4.35 -882.61 -3.84 -26.37 16 6 C 0.20 10.49 4.38 85.56 0.38 10.87 16 7 C -0.49 -27.52 7.16 25.60 0.18 -27.34 16 8 H 0.07 3.81 5.29 -2.91 -0.02 3.79 16 9 C 0.00 0.05 5.45 84.65 0.46 0.51 16 10 N -0.94 -57.88 13.29 21.45 0.29 -57.59 16 11 Si 0.94 45.41 29.54 68.60 2.03 47.44 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 C 0.14 5.11 1.66 43.71 0.07 5.18 16 16 H 0.09 2.74 7.23 -2.39 -0.02 2.73 16 17 C -0.17 -6.23 4.38 27.70 0.12 -6.11 16 18 C -0.14 -5.09 8.84 28.53 0.25 -4.84 16 19 C -0.11 -3.72 5.77 30.28 0.17 -3.55 16 20 C -0.10 -2.67 5.47 30.69 0.17 -2.50 16 21 C -0.13 -3.21 5.65 29.97 0.17 -3.04 16 22 C -0.11 -3.27 5.23 30.01 0.16 -3.11 16 23 C -0.11 -4.04 3.25 30.66 0.10 -3.94 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.02 0.70 7.35 -2.39 -0.02 0.69 16 30 H 0.10 2.93 7.71 -2.39 -0.02 2.91 16 31 H -0.03 -1.94 6.26 -2.39 -0.01 -1.95 16 32 H 0.03 1.94 5.15 -2.39 -0.01 1.93 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.06 2.19 7.01 -2.91 -0.02 2.17 16 35 H 0.10 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.07 2.84 4.48 -2.39 -0.01 2.83 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.97 4.29 -2.39 -0.01 1.96 16 42 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.99 3.52 -2.38 -0.01 2.98 16 45 H 0.05 2.08 6.93 -2.39 -0.02 2.06 16 Total: -1.00 -66.61 326.19 2.55 -64.06 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.95 Total: 21.06 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.34 Total: -30.59 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.55 Total: -83.97 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.21 Total: -18.00 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.61 2.55 -64.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310068024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.126 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds