Wall clock time and date at job start Mon Mar 30 2020 08:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.53005 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.53004 * 112.84935 * 180.02562 * 4 3 2 6 6 N 1.46490 * 109.47273 * 50.33357 * 5 4 3 7 7 C 1.36936 * 120.00239 * 264.31617 * 6 5 4 8 8 H 1.08004 * 120.00496 * 145.42970 * 7 6 5 9 9 C 1.38811 * 120.00150 * 325.43325 * 7 6 5 10 10 N 1.31619 * 119.99739 * 338.56705 * 9 7 6 11 11 Si 1.86804 * 120.00420 * 158.57508 * 9 7 6 12 12 H 1.48498 * 109.47177 * 59.99617 * 11 9 7 13 13 H 1.48499 * 109.47070 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46680 * 299.99856 * 11 9 7 15 15 C 1.46498 * 119.99933 * 84.31720 * 6 5 4 16 16 C 1.54894 * 110.75616 * 120.00048 * 15 6 5 17 17 C 1.54272 * 104.31163 * 156.32224 * 16 15 6 18 18 C 1.53872 * 106.60064 * 336.32590 * 17 16 15 19 19 C 1.54275 * 106.59864 * 359.97438 * 18 17 16 20 20 C 1.53780 * 113.61469 * 311.19794 * 4 3 2 21 21 C 1.53960 * 87.01798 * 89.22601 * 20 4 3 22 22 C 1.53779 * 87.11146 * 25.36394 * 21 20 4 23 23 H 1.08994 * 109.47169 * 299.99836 * 1 2 3 24 24 H 1.08999 * 109.46959 * 59.99995 * 1 2 3 25 25 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47094 * 60.00087 * 3 2 1 27 27 H 1.08998 * 109.47473 * 300.00088 * 3 2 1 28 28 H 1.09002 * 109.46714 * 290.33090 * 5 4 3 29 29 H 1.09000 * 109.46634 * 170.33723 * 5 4 3 30 30 H 0.97002 * 120.00370 * 179.97438 * 10 9 7 31 31 H 1.09003 * 110.81855 * 356.66060 * 15 6 5 32 32 H 1.08997 * 110.48482 * 37.57744 * 16 15 6 33 33 H 1.08996 * 110.48466 * 275.06436 * 16 15 6 34 34 H 1.09000 * 110.02775 * 95.60473 * 17 16 15 35 35 H 1.08993 * 110.03419 * 217.03555 * 17 16 15 36 36 H 1.08998 * 110.03589 * 119.28028 * 18 17 16 37 37 H 1.09002 * 110.03283 * 240.66729 * 18 17 16 38 38 H 1.08995 * 110.48583 * 142.29092 * 19 18 17 39 39 H 1.09001 * 110.48651 * 264.80568 * 19 18 17 40 40 H 1.09000 * 113.60808 * 203.74540 * 20 4 3 41 41 H 1.08998 * 113.61396 * 334.65134 * 20 4 3 42 42 H 1.08998 * 113.53919 * 270.81160 * 21 20 4 43 43 H 1.08999 * 113.73838 * 139.93798 * 21 20 4 44 44 H 1.09006 * 113.61745 * 220.09058 * 22 21 20 45 45 H 1.08999 * 113.69731 * 89.19697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.2390 2.5434 0.0013 6 7 3.6802 3.3821 1.0644 7 6 2.6858 4.2789 0.7778 8 1 1.9126 4.4787 1.5049 9 6 2.6715 4.9312 -0.4474 10 7 3.7788 5.0332 -1.1516 11 14 1.0808 5.6645 -1.0967 12 1 0.5798 6.6849 -0.1411 13 1 1.3312 6.3018 -2.4144 14 1 0.0671 4.5903 -1.2504 15 6 4.1852 3.2615 2.4343 16 6 4.7733 4.6085 2.9231 17 6 4.6871 4.5265 4.4612 18 6 3.5740 3.5149 4.7858 19 6 3.0222 3.0179 3.4336 20 6 4.0759 0.2111 1.0613 21 6 3.9374 -0.8955 -0.0002 22 6 4.0767 0.2107 -1.0593 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 4.0894 3.0304 -0.9623 29 1 5.3056 2.4001 0.1742 30 1 3.7688 5.4887 -2.0080 31 1 4.9284 2.4673 2.5047 32 1 4.1775 5.4421 2.5515 33 1 5.8106 4.7101 2.6041 34 1 5.6365 4.1811 4.8705 35 1 4.4356 5.5036 4.8737 36 1 3.9832 2.6786 5.3526 37 1 2.7826 4.0008 5.3566 38 1 2.7820 1.9561 3.4867 39 1 2.1422 3.5933 3.1460 40 1 5.1073 0.4108 1.3519 41 1 3.4113 0.0834 1.9157 42 1 2.9607 -1.3793 0.0001 43 1 4.7626 -1.6077 -0.0018 44 1 3.4127 0.0828 -1.9143 45 1 5.1077 0.4112 -1.3504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336724598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:13 Heat of formation + Delta-G solvation = -18.005154 kcal Electronic energy + Delta-G solvation = -22684.291456 eV Core-core repulsion = 19702.640109 eV Total energy + Delta-G solvation = -2981.651347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.26516 -37.41227 -36.17704 -34.13605 -30.99902 -28.58731 -27.84924 -26.96717 -26.11688 -24.98045 -24.80228 -22.73020 -20.93020 -19.53416 -19.26557 -17.90543 -16.37736 -15.69518 -15.56636 -15.14743 -14.87138 -14.74408 -14.12043 -13.66689 -13.39676 -13.10734 -12.82703 -12.48804 -12.34707 -11.79947 -11.56178 -11.49805 -11.09638 -10.96553 -10.88554 -10.77219 -10.71562 -10.58417 -10.35183 -10.27994 -10.03904 -9.95361 -9.77288 -9.66843 -9.50009 -9.30192 -9.05343 -8.87302 -8.40508 -6.50628 -5.76328 -3.29749 3.34335 3.41292 3.42776 4.38390 4.47260 5.18657 5.29974 5.42072 5.43736 5.46074 5.48848 5.55628 5.58951 5.71948 5.72436 5.88560 5.94896 6.18828 6.21260 6.24658 6.26997 6.34593 6.36199 6.42296 6.50165 6.53595 6.57557 6.60535 6.61757 6.64127 6.73543 6.83087 6.86429 6.93427 7.08665 7.13045 7.19785 7.28856 7.38567 7.73928 7.84329 7.86951 8.53913 9.23203 9.87509 10.44483 11.23493 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.010104 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.793468 B = 2770.388335 C = 3870.609305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.101 3.899 4 C -0.087 4.087 5 C 0.163 3.837 6 N -0.573 5.573 7 C -0.247 4.247 8 H 0.062 0.938 9 C 0.011 3.989 10 N -0.887 5.887 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.175 3.825 16 C -0.133 4.133 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.135 4.135 20 C -0.121 4.121 21 C -0.137 4.137 22 C -0.129 4.129 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.027 0.973 30 H 0.254 0.746 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -7.476 4.706 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.025 3.975 4 C -0.090 4.090 5 C 0.037 3.963 6 N -0.290 5.290 7 C -0.377 4.377 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.530 5.530 11 Si 0.717 3.283 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.211 1.211 15 C 0.067 3.933 16 C -0.172 4.172 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.174 4.174 20 C -0.159 4.159 21 C -0.174 4.174 22 C -0.167 4.167 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.941 -7.525 4.525 8.831 hybrid contribution -1.047 0.754 -0.372 1.343 sum -1.988 -6.771 4.152 8.188 Atomic orbital electron populations 1.22585 0.82900 1.01222 0.99643 1.87836 1.18065 1.30146 1.95510 1.22114 0.92135 0.81971 1.01238 1.22534 0.93590 0.97491 0.95356 1.20910 0.92357 0.86522 0.96524 1.43777 1.42100 1.40857 1.02303 1.18884 1.01371 1.16820 1.00641 0.92060 1.25048 0.96056 0.97646 1.00154 1.69966 1.24666 1.43851 1.14484 0.86612 0.84322 0.79105 0.78272 1.20839 1.21687 1.21082 1.21381 0.92425 0.93892 0.85583 1.22758 1.00308 1.01715 0.92441 1.22076 0.97671 0.98293 0.98041 1.22047 0.97790 0.98083 0.97937 1.22778 1.00802 0.99451 0.94371 1.22848 0.99742 0.96505 0.96780 1.22922 1.01229 0.95995 0.97233 1.22838 1.00185 0.96847 0.96873 0.94633 0.94809 0.90816 0.91417 0.93778 0.88137 0.95510 0.93596 0.92825 0.90534 0.93476 0.93222 0.93114 0.93121 0.93115 0.93325 0.91155 0.91553 0.92468 0.89091 0.93591 0.92464 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.40 -7.08 7.58 -35.23 -0.27 -7.34 16 3 C 0.10 2.01 4.71 37.16 0.17 2.19 16 4 C -0.09 -1.68 1.15 -153.69 -0.18 -1.86 16 5 C 0.16 3.64 4.68 -4.05 -0.02 3.62 16 6 N -0.57 -13.02 2.00 -163.18 -0.33 -13.35 16 7 C -0.25 -6.17 6.70 -15.06 -0.10 -6.27 16 8 H 0.06 1.56 6.39 -52.48 -0.34 1.22 16 9 C 0.01 0.28 4.93 -17.43 -0.09 0.19 16 10 N -0.89 -24.34 11.34 55.49 0.63 -23.71 16 11 Si 0.89 20.86 29.61 -169.99 -5.03 15.82 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.18 3.52 3.20 -65.73 -0.21 3.31 16 16 C -0.13 -2.62 6.38 -25.07 -0.16 -2.78 16 17 C -0.12 -1.99 6.80 -25.61 -0.17 -2.16 16 18 C -0.12 -1.90 6.80 -25.61 -0.17 -2.07 16 19 C -0.13 -2.46 6.35 -24.86 -0.16 -2.62 16 20 C -0.12 -2.12 6.45 -25.82 -0.17 -2.28 16 21 C -0.14 -2.22 7.54 -25.83 -0.19 -2.41 16 22 C -0.13 -2.27 7.07 -25.92 -0.18 -2.45 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.45 6.99 -51.93 -0.36 1.09 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 2.57 5.36 -51.93 -0.28 2.29 16 29 H 0.03 0.59 7.93 -51.93 -0.41 0.18 16 30 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.05 1.06 7.48 -51.93 -0.39 0.67 16 32 H 0.08 1.73 7.30 -51.93 -0.38 1.35 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.41 6.28 -51.93 -0.33 1.08 16 40 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 41 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.09 1.53 6.15 -51.93 -0.32 1.21 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -25.87 339.55 -8.65 -34.53 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.26 Total: 2.93 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.52 Total: -14.00 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.30 Total: -37.06 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.27 Total: -7.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -25.87 -8.65 -34.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336724598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.522 kcal (2) G-P(sol) polarization free energy of solvation -25.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds