Wall clock time and date at job start Mon Mar 30 2020 08:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.53005 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.53004 * 112.84935 * 180.02562 * 4 3 2 6 6 N 1.46490 * 109.47273 * 50.33357 * 5 4 3 7 7 C 1.36936 * 120.00239 * 264.31617 * 6 5 4 8 8 H 1.08004 * 120.00496 * 145.42970 * 7 6 5 9 9 C 1.38811 * 120.00150 * 325.43325 * 7 6 5 10 10 N 1.31619 * 119.99739 * 338.56705 * 9 7 6 11 11 Si 1.86804 * 120.00420 * 158.57508 * 9 7 6 12 12 H 1.48498 * 109.47177 * 59.99617 * 11 9 7 13 13 H 1.48499 * 109.47070 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46680 * 299.99856 * 11 9 7 15 15 C 1.46498 * 119.99933 * 84.31720 * 6 5 4 16 16 C 1.54894 * 110.75616 * 120.00048 * 15 6 5 17 17 C 1.54272 * 104.31163 * 156.32224 * 16 15 6 18 18 C 1.53872 * 106.60064 * 336.32590 * 17 16 15 19 19 C 1.54275 * 106.59864 * 359.97438 * 18 17 16 20 20 C 1.53780 * 113.61469 * 311.19794 * 4 3 2 21 21 C 1.53960 * 87.01798 * 89.22601 * 20 4 3 22 22 C 1.53779 * 87.11146 * 25.36394 * 21 20 4 23 23 H 1.08994 * 109.47169 * 299.99836 * 1 2 3 24 24 H 1.08999 * 109.46959 * 59.99995 * 1 2 3 25 25 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47094 * 60.00087 * 3 2 1 27 27 H 1.08998 * 109.47473 * 300.00088 * 3 2 1 28 28 H 1.09002 * 109.46714 * 290.33090 * 5 4 3 29 29 H 1.09000 * 109.46634 * 170.33723 * 5 4 3 30 30 H 0.97002 * 120.00370 * 179.97438 * 10 9 7 31 31 H 1.09003 * 110.81855 * 356.66060 * 15 6 5 32 32 H 1.08997 * 110.48482 * 37.57744 * 16 15 6 33 33 H 1.08996 * 110.48466 * 275.06436 * 16 15 6 34 34 H 1.09000 * 110.02775 * 95.60473 * 17 16 15 35 35 H 1.08993 * 110.03419 * 217.03555 * 17 16 15 36 36 H 1.08998 * 110.03589 * 119.28028 * 18 17 16 37 37 H 1.09002 * 110.03283 * 240.66729 * 18 17 16 38 38 H 1.08995 * 110.48583 * 142.29092 * 19 18 17 39 39 H 1.09001 * 110.48651 * 264.80568 * 19 18 17 40 40 H 1.09000 * 113.60808 * 203.74540 * 20 4 3 41 41 H 1.08998 * 113.61396 * 334.65134 * 20 4 3 42 42 H 1.08998 * 113.53919 * 270.81160 * 21 20 4 43 43 H 1.08999 * 113.73838 * 139.93798 * 21 20 4 44 44 H 1.09006 * 113.61745 * 220.09058 * 22 21 20 45 45 H 1.08999 * 113.69731 * 89.19697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.2390 2.5434 0.0013 6 7 3.6802 3.3821 1.0644 7 6 2.6858 4.2789 0.7778 8 1 1.9126 4.4787 1.5049 9 6 2.6715 4.9312 -0.4474 10 7 3.7788 5.0332 -1.1516 11 14 1.0808 5.6645 -1.0967 12 1 0.5798 6.6849 -0.1411 13 1 1.3312 6.3018 -2.4144 14 1 0.0671 4.5903 -1.2504 15 6 4.1852 3.2615 2.4343 16 6 4.7733 4.6085 2.9231 17 6 4.6871 4.5265 4.4612 18 6 3.5740 3.5149 4.7858 19 6 3.0222 3.0179 3.4336 20 6 4.0759 0.2111 1.0613 21 6 3.9374 -0.8955 -0.0002 22 6 4.0767 0.2107 -1.0593 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 4.0894 3.0304 -0.9623 29 1 5.3056 2.4001 0.1742 30 1 3.7688 5.4887 -2.0080 31 1 4.9284 2.4673 2.5047 32 1 4.1775 5.4421 2.5515 33 1 5.8106 4.7101 2.6041 34 1 5.6365 4.1811 4.8705 35 1 4.4356 5.5036 4.8737 36 1 3.9832 2.6786 5.3526 37 1 2.7826 4.0008 5.3566 38 1 2.7820 1.9561 3.4867 39 1 2.1422 3.5933 3.1460 40 1 5.1073 0.4108 1.3519 41 1 3.4113 0.0834 1.9157 42 1 2.9607 -1.3793 0.0001 43 1 4.7626 -1.6077 -0.0018 44 1 3.4127 0.0828 -1.9143 45 1 5.1077 0.4112 -1.3504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336724598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:12 Heat of formation + Delta-G solvation = -29.337759 kcal Electronic energy + Delta-G solvation = -22684.782875 eV Core-core repulsion = 19702.640109 eV Total energy + Delta-G solvation = -2982.142766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78513 -38.94809 -37.59141 -35.87206 -32.88577 -30.10934 -29.33062 -28.39862 -27.87254 -26.42887 -26.29660 -24.42606 -22.45974 -21.06564 -20.83012 -19.39035 -18.18009 -17.26798 -17.14107 -16.62773 -16.44678 -16.24536 -15.87534 -15.13085 -15.03803 -14.49854 -14.34528 -13.98617 -13.87942 -13.39569 -13.24993 -12.98987 -12.80403 -12.71498 -12.46625 -12.39362 -12.24271 -12.06091 -11.91860 -11.74564 -11.71572 -11.61029 -11.30997 -11.11659 -10.97485 -10.86124 -10.66073 -10.38627 -10.33902 -8.41809 -7.73215 -5.29030 1.42936 1.46242 1.50317 2.53060 2.96934 3.30996 3.60112 3.94434 4.01105 4.04455 4.06650 4.13503 4.17631 4.37954 4.51882 4.53174 4.69016 4.70952 4.78291 4.80277 4.83113 4.92189 4.94928 4.98200 5.00292 5.02412 5.08055 5.13501 5.19897 5.22640 5.27189 5.27742 5.32483 5.37013 5.57645 5.65737 5.67336 5.73195 5.79693 5.84110 5.91619 6.39716 6.55745 7.27285 8.00495 8.50814 9.22186 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.010104 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.793468 B = 2770.388335 C = 3870.609305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.118 3.882 4 C -0.095 4.095 5 C 0.169 3.831 6 N -0.582 5.582 7 C -0.231 4.231 8 H 0.055 0.945 9 C -0.035 4.035 10 N -0.917 5.917 11 Si 0.934 3.066 12 H -0.279 1.279 13 H -0.298 1.298 14 H -0.282 1.282 15 C 0.168 3.832 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.128 4.128 23 H 0.037 0.963 24 H 0.031 0.969 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.015 0.985 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -9.315 6.485 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.042 3.958 4 C -0.097 4.097 5 C 0.042 3.958 6 N -0.300 5.300 7 C -0.362 4.362 8 H 0.073 0.927 9 C -0.232 4.232 10 N -0.562 5.562 11 Si 0.763 3.237 12 H -0.205 1.205 13 H -0.224 1.224 14 H -0.208 1.208 15 C 0.061 3.939 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.166 4.166 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.124 0.876 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.104 -9.380 6.330 11.370 hybrid contribution -1.013 1.301 -0.899 1.878 sum -2.118 -8.079 5.431 9.963 Atomic orbital electron populations 1.22831 0.81106 1.03401 0.99687 1.87815 1.19975 1.28456 1.95434 1.21739 0.92677 0.82615 0.98814 1.22424 0.93118 0.96312 0.97855 1.20735 0.92433 0.87802 0.94797 1.43914 1.41909 1.40693 1.03513 1.18948 1.01360 1.15814 1.00086 0.92724 1.25536 0.97895 0.98937 1.00831 1.70090 1.26031 1.45559 1.14561 0.85857 0.81972 0.78485 0.77361 1.20530 1.22422 1.20817 1.21563 0.93473 0.94318 0.84500 1.22668 0.98940 1.00023 0.95508 1.22026 0.99143 0.99239 0.94828 1.22023 0.97859 0.98730 0.96508 1.22645 0.99040 0.99567 0.95353 1.22766 0.99756 0.95988 0.96364 1.22799 1.02073 0.95598 0.95203 1.22844 1.00232 0.96864 0.96678 0.94396 0.94984 0.87569 0.93371 0.96633 0.91581 0.95963 0.94386 0.91977 0.94139 0.94303 0.91027 0.92268 0.90702 0.91875 0.92674 0.93514 0.90946 0.92691 0.89267 0.91154 0.92997 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -13.69 7.58 -148.98 -1.13 -14.81 16 3 C 0.12 4.72 4.71 71.98 0.34 5.06 16 4 C -0.09 -3.64 1.15 -51.65 -0.06 -3.70 16 5 C 0.17 7.69 4.68 86.38 0.40 8.09 16 6 N -0.58 -26.99 2.00 -670.17 -1.34 -28.33 16 7 C -0.23 -11.87 6.70 84.03 0.56 -11.31 16 8 H 0.06 2.86 6.39 -2.91 -0.02 2.84 16 9 C -0.04 -1.91 4.93 84.86 0.42 -1.49 16 10 N -0.92 -52.40 11.34 21.65 0.25 -52.16 16 11 Si 0.93 44.08 29.61 68.60 2.03 46.11 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C 0.17 6.69 3.20 46.42 0.15 6.84 16 16 C -0.13 -5.17 6.38 31.67 0.20 -4.97 16 17 C -0.11 -3.43 6.80 31.32 0.21 -3.21 16 18 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 19 C -0.13 -4.46 6.35 31.80 0.20 -4.26 16 20 C -0.11 -3.66 6.45 31.18 0.20 -3.46 16 21 C -0.12 -3.56 7.54 31.18 0.24 -3.32 16 22 C -0.13 -4.36 7.07 31.12 0.22 -4.14 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.05 2.10 6.99 -2.39 -0.02 2.08 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 3.53 5.36 -2.39 -0.01 3.51 16 29 H 0.02 1.00 7.93 -2.39 -0.02 0.98 16 30 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.06 2.36 7.48 -2.39 -0.02 2.34 16 32 H 0.04 1.86 7.30 -2.39 -0.02 1.84 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.86 6.28 -2.39 -0.01 1.84 16 40 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 41 H 0.05 1.83 8.10 -2.39 -0.02 1.82 16 42 H 0.09 2.73 6.15 -2.39 -0.01 2.72 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.80 8.10 -2.38 -0.02 1.79 16 45 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -56.97 339.55 5.28 -51.69 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.93 Total: 18.40 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.55 Total: -20.90 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.10 Total: -80.48 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.13 Total: -14.81 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -56.97 5.28 -51.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336724598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -56.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds