Wall clock time and date at job start Mon Mar 30 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46673 * 2 1 4 4 C 1.46903 * 111.00255 * 196.08112 * 3 2 1 5 5 C 1.50705 * 109.46492 * 66.04749 * 4 3 2 6 6 H 1.07993 * 120.00558 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99829 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99646 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47505 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47250 * 300.00292 * 9 7 5 12 12 H 1.48507 * 109.47264 * 60.00095 * 9 7 5 13 13 C 1.46905 * 111.00014 * 72.13294 * 3 2 1 14 14 C 1.53007 * 109.47139 * 199.80525 * 13 3 2 15 15 H 1.09006 * 109.83738 * 302.15097 * 14 13 3 16 16 C 1.54529 * 109.84567 * 181.22205 * 14 13 3 17 17 C 1.56085 * 101.98499 * 218.62500 * 16 14 13 18 18 H 1.08997 * 112.97416 * 155.30334 * 17 16 14 19 19 C 1.53005 * 106.57085 * 280.19080 * 17 16 14 20 20 C 1.52683 * 110.67185 * 162.52517 * 19 17 16 21 21 C 1.53241 * 108.69742 * 298.07365 * 20 19 17 22 22 C 1.52873 * 108.44575 * 63.11915 * 21 20 19 23 23 C 1.51201 * 111.20714 * 300.76063 * 22 21 20 24 24 H 1.09000 * 108.43560 * 173.69237 * 23 22 21 25 25 O 1.42930 * 113.18075 * 293.22872 * 23 22 21 26 26 H 1.09000 * 109.46634 * 181.16284 * 1 2 3 27 27 H 1.09003 * 109.47052 * 301.15911 * 1 2 3 28 28 H 1.08996 * 109.47234 * 61.16859 * 1 2 3 29 29 H 1.08996 * 109.47414 * 240.00360 * 2 1 3 30 30 H 1.08999 * 109.47503 * 119.99897 * 2 1 3 31 31 H 1.09003 * 109.47257 * 306.05214 * 4 3 2 32 32 H 1.09000 * 109.47460 * 186.04445 * 4 3 2 33 33 H 0.97006 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47001 * 319.80123 * 13 3 2 35 35 H 1.09001 * 109.47611 * 79.80497 * 13 3 2 36 36 H 1.09000 * 110.93302 * 336.79587 * 16 14 13 37 37 H 1.08998 * 110.92730 * 100.42263 * 16 14 13 38 38 H 1.09004 * 109.23284 * 282.83132 * 19 17 16 39 39 H 1.09002 * 109.23674 * 42.21409 * 19 17 16 40 40 H 1.09000 * 109.59813 * 178.31574 * 20 19 17 41 41 H 1.08993 * 109.73046 * 57.91678 * 20 19 17 42 42 H 1.08999 * 109.64545 * 303.42858 * 21 20 19 43 43 H 1.08997 * 109.81198 * 182.90460 * 21 20 19 44 44 H 1.08994 * 109.13465 * 180.31441 * 22 21 20 45 45 H 1.09001 * 109.13400 * 61.20150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4375 1.4423 -0.3799 5 6 3.5909 1.0078 -1.8148 6 1 2.7221 0.7185 -2.3873 7 6 4.8406 0.9795 -2.3966 8 7 5.8987 1.3313 -1.6993 9 14 5.0310 0.4403 -4.1749 10 1 6.4643 0.4971 -4.5587 11 1 4.5332 -0.9505 -4.3264 12 1 4.2466 1.3452 -5.0533 13 6 1.7983 2.0216 1.3053 14 6 1.8458 3.5426 1.1456 15 1 2.8054 3.8403 0.7229 16 6 1.6445 4.2209 2.5194 17 6 0.7559 5.4490 2.1474 18 1 0.1578 5.8103 2.9840 19 6 1.6972 6.5119 1.5770 20 6 0.9128 7.5626 0.7948 21 6 0.2148 6.8772 -0.3848 22 6 -0.7872 5.8639 0.1685 23 6 -0.0990 4.8271 1.0273 24 1 -0.8619 4.1989 1.4871 25 8 0.7792 3.9764 0.2871 26 1 -0.3632 -1.0275 0.0209 27 1 -0.3633 0.5317 0.8794 28 1 -0.3633 0.4956 -0.9002 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0134 0.7780 0.2645 32 1 3.8026 2.4632 -0.2684 33 1 6.7779 1.3111 -2.1086 34 1 0.8228 1.7273 1.6924 35 1 2.5757 1.7049 2.0006 36 1 1.1225 3.5572 3.2087 37 1 2.5981 4.5423 2.9384 38 1 2.2294 6.9966 2.3955 39 1 2.4182 6.0343 0.9136 40 1 1.5956 8.3261 0.4221 41 1 0.1675 8.0235 1.4430 42 1 0.9538 6.3635 -0.9996 43 1 -0.3094 7.6200 -0.9861 44 1 -1.2867 5.3653 -0.6621 45 1 -1.5310 6.3881 0.7686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379145982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:46 Heat of formation + Delta-G solvation = -63.261558 kcal Electronic energy + Delta-G solvation = -21874.765294 eV Core-core repulsion = 18891.151482 eV Total energy + Delta-G solvation = -2983.613812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28923 -36.99223 -35.34628 -32.68138 -32.49608 -30.48448 -29.79466 -28.94473 -26.54113 -24.41135 -22.68533 -22.29182 -21.70439 -20.70127 -19.63758 -19.17212 -16.55563 -16.03520 -15.60688 -14.98585 -14.82854 -14.52816 -14.12570 -13.94556 -13.73423 -13.46806 -12.97173 -12.69834 -12.46841 -12.04200 -11.89406 -11.83512 -11.73251 -11.45091 -11.35485 -11.22293 -10.98072 -10.94321 -10.67370 -10.55943 -10.50315 -10.41449 -10.04058 -9.96513 -9.89155 -9.67424 -9.12944 -8.82398 -8.36065 -7.05685 -5.96056 -3.95926 3.38291 3.41605 3.45598 4.11386 4.48926 4.54805 4.69298 4.87489 4.95921 5.17879 5.21839 5.25492 5.38236 5.40854 5.44649 5.56301 5.59731 5.65997 5.74286 5.80234 5.88907 5.91552 5.95955 6.00186 6.02020 6.13699 6.17416 6.22901 6.23178 6.31272 6.33182 6.34209 6.44518 6.54384 6.66938 6.81731 6.89708 7.38008 7.42715 7.61117 7.90664 8.20500 8.33918 8.66915 9.11840 9.67553 11.14990 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.005510 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.963263 B = 5080.685711 C = 5646.529803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 N -0.525 5.525 4 C 0.193 3.807 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.046 3.954 14 C 0.092 3.908 15 H 0.082 0.918 16 C -0.151 4.151 17 C -0.117 4.117 18 H 0.090 0.910 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.083 3.917 24 H 0.046 0.954 25 O -0.340 6.340 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.013 0.987 31 H -0.013 1.013 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 8.991 8.918 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 N -0.250 5.250 4 C 0.068 3.932 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.202 1.202 13 C -0.083 4.083 14 C 0.034 3.966 15 H 0.100 0.900 16 C -0.190 4.190 17 C -0.135 4.135 18 H 0.108 0.892 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.148 4.148 23 C 0.025 3.975 24 H 0.064 0.936 25 O -0.259 6.259 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.004 0.996 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.606 9.188 8.323 16.982 hybrid contribution 0.789 -0.746 -0.017 1.086 sum -10.817 8.442 8.306 16.039 Atomic orbital electron populations 1.21777 0.96724 0.99672 1.01698 1.21943 0.94087 0.90484 1.00578 1.62042 1.22498 1.15487 1.24927 1.19745 0.81106 0.96620 0.95754 1.21139 0.92730 1.43548 0.96609 0.91924 1.24977 0.95877 0.95756 0.98044 1.69953 0.98575 1.48936 1.36656 0.86583 0.76741 0.79137 0.85083 1.21446 1.20345 1.20170 1.22415 0.99703 0.93990 0.92199 1.22792 0.91690 0.93665 0.88435 0.89971 1.23451 1.00643 0.96822 0.98035 1.22834 0.96826 0.95802 0.98048 0.89184 1.21514 0.97945 0.95982 0.99632 1.21499 0.99155 0.97543 0.97257 1.21529 0.98883 0.97685 0.97578 1.21153 0.97788 0.96071 0.99826 1.22043 0.92656 0.91357 0.91463 0.93578 1.88646 1.37745 1.64508 1.34986 0.93744 0.93841 0.92199 0.89760 0.96897 0.99558 0.95203 0.93011 0.91922 0.95110 0.91025 0.90278 0.92291 0.90975 0.92127 0.92395 0.90785 0.92297 0.91270 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.00 37.16 0.37 -2.02 16 2 C 0.06 1.18 5.52 -3.82 -0.02 1.15 16 3 N -0.53 -11.83 4.31 -236.06 -1.02 -12.85 16 4 C 0.19 5.16 4.55 -4.97 -0.02 5.13 16 5 C -0.50 -14.47 8.28 -34.44 -0.29 -14.75 16 6 H 0.06 1.80 7.26 -52.49 -0.38 1.42 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.05 0.86 4.39 -3.82 -0.02 0.85 16 14 C 0.09 1.61 2.81 -25.92 -0.07 1.54 16 15 H 0.08 1.65 6.47 -51.93 -0.34 1.31 16 16 C -0.15 -1.99 5.90 -24.28 -0.14 -2.14 16 17 C -0.12 -1.39 3.73 -88.43 -0.33 -1.72 16 18 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.11 -1.35 4.91 -26.89 -0.13 -1.48 16 20 C -0.12 -1.26 5.92 -26.77 -0.16 -1.42 16 21 C -0.12 -1.43 5.93 -26.67 -0.16 -1.59 16 22 C -0.11 -1.34 5.63 -27.70 -0.16 -1.50 16 23 C 0.08 1.15 3.06 -27.10 -0.08 1.07 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 O -0.34 -6.21 10.64 -35.23 -0.37 -6.59 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.69 6.51 -51.93 -0.34 0.35 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.89 6.59 -51.93 -0.34 1.55 16 30 H 0.01 0.25 8.05 -51.93 -0.42 -0.16 16 31 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 32 H 0.03 0.85 6.62 -51.93 -0.34 0.50 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 1.08 6.24 -51.93 -0.32 0.76 16 35 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 36 H 0.07 0.86 7.86 -51.93 -0.41 0.46 16 37 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.03 6.97 -51.93 -0.36 0.67 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -30.71 339.71 -10.15 -40.86 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.29 Total: -1.83 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.31 Total: -15.40 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.28 Total: -39.32 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.37 Total: -6.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.71 -10.15 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379145982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.400 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds