Wall clock time and date at job start Mon Mar 30 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46673 * 2 1 4 4 C 1.46903 * 111.00255 * 196.08112 * 3 2 1 5 5 C 1.50705 * 109.46492 * 66.04749 * 4 3 2 6 6 H 1.07993 * 120.00558 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99829 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99646 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47505 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47250 * 300.00292 * 9 7 5 12 12 H 1.48507 * 109.47264 * 60.00095 * 9 7 5 13 13 C 1.46905 * 111.00014 * 72.13294 * 3 2 1 14 14 C 1.53007 * 109.47139 * 199.80525 * 13 3 2 15 15 H 1.09006 * 109.83738 * 302.15097 * 14 13 3 16 16 C 1.54529 * 109.84567 * 181.22205 * 14 13 3 17 17 C 1.56085 * 101.98499 * 218.62500 * 16 14 13 18 18 H 1.08997 * 112.97416 * 155.30334 * 17 16 14 19 19 C 1.53005 * 106.57085 * 280.19080 * 17 16 14 20 20 C 1.52683 * 110.67185 * 162.52517 * 19 17 16 21 21 C 1.53241 * 108.69742 * 298.07365 * 20 19 17 22 22 C 1.52873 * 108.44575 * 63.11915 * 21 20 19 23 23 C 1.51201 * 111.20714 * 300.76063 * 22 21 20 24 24 H 1.09000 * 108.43560 * 173.69237 * 23 22 21 25 25 O 1.42930 * 113.18075 * 293.22872 * 23 22 21 26 26 H 1.09000 * 109.46634 * 181.16284 * 1 2 3 27 27 H 1.09003 * 109.47052 * 301.15911 * 1 2 3 28 28 H 1.08996 * 109.47234 * 61.16859 * 1 2 3 29 29 H 1.08996 * 109.47414 * 240.00360 * 2 1 3 30 30 H 1.08999 * 109.47503 * 119.99897 * 2 1 3 31 31 H 1.09003 * 109.47257 * 306.05214 * 4 3 2 32 32 H 1.09000 * 109.47460 * 186.04445 * 4 3 2 33 33 H 0.97006 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47001 * 319.80123 * 13 3 2 35 35 H 1.09001 * 109.47611 * 79.80497 * 13 3 2 36 36 H 1.09000 * 110.93302 * 336.79587 * 16 14 13 37 37 H 1.08998 * 110.92730 * 100.42263 * 16 14 13 38 38 H 1.09004 * 109.23284 * 282.83132 * 19 17 16 39 39 H 1.09002 * 109.23674 * 42.21409 * 19 17 16 40 40 H 1.09000 * 109.59813 * 178.31574 * 20 19 17 41 41 H 1.08993 * 109.73046 * 57.91678 * 20 19 17 42 42 H 1.08999 * 109.64545 * 303.42858 * 21 20 19 43 43 H 1.08997 * 109.81198 * 182.90460 * 21 20 19 44 44 H 1.08994 * 109.13465 * 180.31441 * 22 21 20 45 45 H 1.09001 * 109.13400 * 61.20150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4375 1.4423 -0.3799 5 6 3.5909 1.0078 -1.8148 6 1 2.7221 0.7185 -2.3873 7 6 4.8406 0.9795 -2.3966 8 7 5.8987 1.3313 -1.6993 9 14 5.0310 0.4403 -4.1749 10 1 6.4643 0.4971 -4.5587 11 1 4.5332 -0.9505 -4.3264 12 1 4.2466 1.3452 -5.0533 13 6 1.7983 2.0216 1.3053 14 6 1.8458 3.5426 1.1456 15 1 2.8054 3.8403 0.7229 16 6 1.6445 4.2209 2.5194 17 6 0.7559 5.4490 2.1474 18 1 0.1578 5.8103 2.9840 19 6 1.6972 6.5119 1.5770 20 6 0.9128 7.5626 0.7948 21 6 0.2148 6.8772 -0.3848 22 6 -0.7872 5.8639 0.1685 23 6 -0.0990 4.8271 1.0273 24 1 -0.8619 4.1989 1.4871 25 8 0.7792 3.9764 0.2871 26 1 -0.3632 -1.0275 0.0209 27 1 -0.3633 0.5317 0.8794 28 1 -0.3633 0.4956 -0.9002 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0134 0.7780 0.2645 32 1 3.8026 2.4632 -0.2684 33 1 6.7779 1.3111 -2.1086 34 1 0.8228 1.7273 1.6924 35 1 2.5757 1.7049 2.0006 36 1 1.1225 3.5572 3.2087 37 1 2.5981 4.5423 2.9384 38 1 2.2294 6.9966 2.3955 39 1 2.4182 6.0343 0.9136 40 1 1.5956 8.3261 0.4221 41 1 0.1675 8.0235 1.4430 42 1 0.9538 6.3635 -0.9996 43 1 -0.3094 7.6200 -0.9861 44 1 -1.2867 5.3653 -0.6621 45 1 -1.5310 6.3881 0.7686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379145982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:45 Heat of formation + Delta-G solvation = -82.165252 kcal Electronic energy + Delta-G solvation = -21875.585019 eV Core-core repulsion = 18891.151482 eV Total energy + Delta-G solvation = -2984.433538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44173 -38.63703 -36.56283 -34.76984 -33.73142 -31.92471 -30.89054 -30.55589 -28.29475 -25.91032 -24.35615 -23.62078 -22.86349 -21.92445 -21.22302 -20.29215 -18.63287 -17.35701 -17.06441 -16.56182 -16.19808 -15.99152 -15.55819 -15.31773 -15.11304 -14.87644 -14.29530 -14.09064 -13.94582 -13.83637 -13.33134 -12.97571 -12.82599 -12.78146 -12.70469 -12.59958 -12.59074 -12.45489 -12.33985 -12.21382 -11.91188 -11.72106 -11.58385 -11.45798 -11.18516 -10.98469 -10.87302 -10.61335 -10.15715 -8.89977 -8.21071 -6.30370 1.37816 1.41898 1.49675 2.39175 2.92703 3.10882 3.35733 3.51834 3.72174 3.83879 4.06253 4.12851 4.20184 4.24432 4.32287 4.36364 4.51399 4.53268 4.56753 4.58727 4.64377 4.67997 4.73333 4.81321 4.85916 4.94707 4.99827 5.03046 5.09478 5.11233 5.16066 5.25209 5.27973 5.32886 5.33980 5.38438 5.41335 5.45169 5.59917 5.65217 6.07170 6.37276 6.42742 6.72216 6.85750 7.38634 8.89969 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.005510 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.963263 B = 5080.685711 C = 5646.529803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.212 3.788 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.271 1.271 13 C 0.047 3.953 14 C 0.094 3.906 15 H 0.038 0.962 16 C -0.143 4.143 17 C -0.103 4.103 18 H 0.127 0.873 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.071 3.929 24 H 0.056 0.944 25 O -0.374 6.374 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.019 0.981 31 H -0.043 1.043 32 H 0.001 0.999 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 9.693 9.888 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 N -0.261 5.261 4 C 0.086 3.914 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.196 1.196 13 C -0.082 4.082 14 C 0.036 3.964 15 H 0.057 0.943 16 C -0.181 4.181 17 C -0.121 4.121 18 H 0.145 0.855 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.147 4.147 23 C 0.013 3.987 24 H 0.073 0.927 25 O -0.294 6.294 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.037 0.963 31 H -0.025 1.025 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.815 9.889 9.305 19.371 hybrid contribution 1.453 -0.955 -0.303 1.765 sum -12.362 8.935 9.002 17.711 Atomic orbital electron populations 1.21656 0.93385 1.01663 1.01736 1.22005 0.96713 0.89109 0.99572 1.62008 1.19368 1.17089 1.27591 1.19340 0.83477 0.93922 0.94693 1.21419 0.92950 1.43980 0.97615 0.92371 1.25908 0.95379 0.95502 1.02868 1.70082 0.99121 1.49609 1.38727 0.85458 0.77080 0.79131 0.79093 1.20518 1.19055 1.19650 1.22524 1.00609 0.94734 0.90283 1.22619 0.90036 0.93037 0.90742 0.94349 1.23418 1.01728 0.97501 0.95480 1.22874 0.96251 0.94806 0.98188 0.85525 1.21522 0.97686 0.96377 0.99698 1.21489 0.99579 0.97044 0.96829 1.21519 0.98271 0.97972 0.98022 1.21201 0.98062 0.95698 0.99722 1.22378 0.92459 0.91644 0.92183 0.92653 1.88605 1.38375 1.65631 1.36784 0.90838 0.92415 0.93366 0.92392 0.96304 1.02530 0.98069 0.92704 0.89531 0.95430 0.89039 0.89682 0.90441 0.94817 0.91830 0.89626 0.94806 0.90584 0.92617 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 10.00 71.98 0.72 -3.39 16 2 C 0.05 2.24 5.52 86.30 0.48 2.72 16 3 N -0.54 -25.12 4.31 -900.74 -3.88 -29.00 16 4 C 0.21 12.06 4.55 85.56 0.39 12.45 16 5 C -0.52 -31.37 8.28 25.60 0.21 -31.15 16 6 H 0.06 3.47 7.26 -2.91 -0.02 3.45 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 9 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.05 1.80 4.39 86.30 0.38 2.17 16 14 C 0.09 3.41 2.81 31.12 0.09 3.49 16 15 H 0.04 1.70 6.47 -2.38 -0.02 1.69 16 16 C -0.14 -3.60 5.90 32.18 0.19 -3.41 16 17 C -0.10 -2.19 3.73 -9.38 -0.03 -2.23 16 18 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.12 -2.61 4.91 30.49 0.15 -2.46 16 20 C -0.11 -2.18 5.92 30.57 0.18 -2.00 16 21 C -0.12 -2.80 5.93 30.63 0.18 -2.62 16 22 C -0.11 -2.46 5.63 29.96 0.17 -2.29 16 23 C 0.07 1.85 3.06 30.35 0.09 1.95 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 O -0.37 -14.03 10.64 -148.98 -1.59 -15.62 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.70 6.51 -2.39 -0.02 1.68 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.68 6.59 -2.39 -0.02 2.66 16 30 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 31 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 32 H 0.00 0.08 6.62 -2.39 -0.02 0.06 16 33 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 34 H 0.09 2.87 6.24 -2.39 -0.01 2.86 16 35 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 36 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 37 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.01 6.97 -2.39 -0.02 1.00 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.42 339.71 1.42 -69.00 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.93 Total: 11.64 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 3.65 Total: -26.24 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.60 Total: -87.08 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.59 Total: -15.62 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -70.42 1.42 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379145982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.167 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds