Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46847 * 2 1 4 4 C 1.46904 * 110.99983 * 196.08788 * 3 2 1 5 5 C 1.50700 * 109.47063 * 66.04822 * 4 3 2 6 6 H 1.07999 * 120.00350 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99984 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99884 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47319 * 59.99490 * 9 7 5 11 11 H 1.48500 * 109.46986 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47334 * 299.99566 * 9 7 5 13 13 C 1.46899 * 111.00086 * 72.13507 * 3 2 1 14 14 C 1.52996 * 109.47332 * 199.80459 * 13 3 2 15 15 H 1.09005 * 109.86181 * 302.22819 * 14 13 3 16 16 C 1.54226 * 109.87515 * 181.23048 * 14 13 3 17 17 C 1.55671 * 103.93981 * 240.13457 * 16 14 13 18 18 H 1.09001 * 112.62775 * 217.04750 * 17 16 14 19 19 C 1.53015 * 106.60506 * 93.45546 * 17 16 14 20 20 C 1.51385 * 111.47880 * 198.47674 * 19 17 16 21 21 C 1.53259 * 109.52363 * 60.16067 * 20 19 17 22 22 C 1.52856 * 108.34347 * 297.37772 * 21 20 19 23 23 C 1.51076 * 111.36555 * 59.17038 * 22 21 20 24 24 H 1.08995 * 109.01164 * 185.53300 * 23 22 21 25 25 O 1.43589 * 112.30071 * 64.85008 * 23 22 21 26 26 H 1.08997 * 109.47483 * 61.15816 * 1 2 3 27 27 H 1.09005 * 109.46745 * 181.15942 * 1 2 3 28 28 H 1.09002 * 109.47082 * 301.15559 * 1 2 3 29 29 H 1.09005 * 109.46872 * 240.00440 * 2 1 3 30 30 H 1.09000 * 109.47798 * 120.00205 * 2 1 3 31 31 H 1.08995 * 109.46827 * 306.05086 * 4 3 2 32 32 H 1.08997 * 109.47306 * 186.04813 * 4 3 2 33 33 H 0.96994 * 120.00019 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46883 * 319.80639 * 13 3 2 35 35 H 1.08999 * 109.46839 * 79.79795 * 13 3 2 36 36 H 1.08999 * 110.53469 * 358.74620 * 16 14 13 37 37 H 1.09001 * 110.53238 * 121.37957 * 16 14 13 38 38 H 1.08999 * 109.21194 * 317.01308 * 19 17 16 39 39 H 1.08999 * 109.21405 * 76.33965 * 19 17 16 40 40 H 1.09003 * 108.54850 * 300.51991 * 20 19 17 41 41 H 1.09001 * 109.91438 * 180.64756 * 20 19 17 42 42 H 1.08999 * 109.69252 * 177.65832 * 21 20 19 43 43 H 1.09005 * 109.71795 * 57.10923 * 21 20 19 44 44 H 1.08993 * 109.10275 * 298.68641 * 22 21 20 45 45 H 1.09003 * 109.05237 * 179.61828 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4375 1.4422 -0.3800 5 6 3.5909 1.0078 -1.8149 6 1 2.7221 0.7178 -2.3872 7 6 4.8405 0.9795 -2.3968 8 7 5.8985 1.3322 -1.6999 9 14 5.0307 0.4403 -4.1752 10 1 4.2463 1.3452 -5.0534 11 1 6.4639 0.4982 -4.5594 12 1 4.5329 -0.9506 -4.3267 13 6 1.7984 2.0216 1.3053 14 6 1.8460 3.5425 1.1456 15 1 2.8050 3.8405 0.7216 16 6 1.6455 4.2201 2.5165 17 6 0.3621 5.0803 2.3254 18 1 0.4135 6.0330 2.8525 19 6 -0.8141 4.2206 2.7933 20 6 -2.1299 4.7420 2.2562 21 6 -2.1007 4.7247 0.7240 22 6 -0.9955 5.6699 0.2533 23 6 0.3521 5.2541 0.7950 24 1 1.0926 6.0048 0.5193 25 8 0.7737 3.9789 0.2871 26 1 -0.3634 0.4957 -0.9001 27 1 -0.3633 -1.0275 0.0208 28 1 -0.3633 0.5317 0.8795 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 4.0133 0.7779 0.2642 32 1 3.8027 2.4631 -0.2685 33 1 6.7776 1.3126 -2.1094 34 1 0.8229 1.7272 1.6924 35 1 2.5758 1.7047 2.0004 36 1 1.4919 3.4719 3.2940 37 1 2.4995 4.8525 2.7590 38 1 -0.6879 3.2052 2.4178 39 1 -0.8321 4.1997 3.8830 40 1 -2.2672 5.7646 2.6080 41 1 -2.9499 4.1190 2.6137 42 1 -3.0617 5.0604 0.3345 43 1 -1.8945 3.7140 0.3715 44 1 -1.2208 6.6802 0.5946 45 1 -0.9600 5.6612 -0.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379145983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -63.490527 kcal Electronic energy + Delta-G solvation = -21973.828580 eV Core-core repulsion = 18990.204839 eV Total energy + Delta-G solvation = -2983.623741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25989 -36.98322 -35.43894 -32.73392 -32.48344 -30.47656 -29.82423 -28.94326 -26.58590 -24.47513 -22.45794 -22.32350 -21.87903 -20.63061 -19.70513 -19.05464 -16.62586 -16.11237 -15.68801 -14.97055 -14.78171 -14.36842 -14.21669 -14.03073 -13.63785 -13.30673 -13.24235 -12.87848 -12.41063 -12.04717 -11.97790 -11.74799 -11.68473 -11.50475 -11.33607 -11.17919 -10.96611 -10.93451 -10.67998 -10.56937 -10.51108 -10.32252 -10.04035 -9.99110 -9.95684 -9.63228 -9.14456 -8.93178 -8.36434 -7.07243 -5.96437 -3.96397 3.38010 3.41377 3.45316 4.16264 4.48583 4.60266 4.66266 4.89327 4.95825 5.12543 5.18047 5.25854 5.37872 5.40431 5.44624 5.54325 5.56363 5.68469 5.76035 5.79845 5.85617 5.92324 5.93836 5.99959 6.02130 6.13125 6.18868 6.22421 6.23702 6.31189 6.32547 6.33803 6.43607 6.53902 6.62656 6.81733 6.89958 7.36146 7.41928 7.49448 7.89855 8.19846 8.33230 8.66166 9.11394 9.67142 11.14652 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005033 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.034068 B = 5561.720250 C = 5706.185653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 N -0.526 5.526 4 C 0.192 3.808 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.058 3.942 14 C 0.087 3.913 15 H 0.071 0.929 16 C -0.152 4.152 17 C -0.114 4.114 18 H 0.086 0.914 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.108 4.108 23 C 0.077 3.923 24 H 0.052 0.948 25 O -0.335 6.335 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.013 0.987 31 H -0.013 1.013 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 7.053 9.761 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 N -0.251 5.251 4 C 0.067 3.933 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.071 4.071 14 C 0.028 3.972 15 H 0.089 0.911 16 C -0.190 4.190 17 C -0.133 4.133 18 H 0.104 0.896 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.145 4.145 23 C 0.019 3.981 24 H 0.070 0.930 25 O -0.254 6.254 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.005 0.995 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.714 7.198 9.196 18.012 hybrid contribution 0.990 -0.555 -0.116 1.141 sum -12.724 6.643 9.080 16.984 Atomic orbital electron populations 1.21777 0.96672 0.99666 1.01746 1.21942 0.94117 0.90420 1.00585 1.62045 1.22509 1.15565 1.24942 1.19747 0.81112 0.96629 0.95775 1.21139 0.92738 1.43555 0.96617 0.91915 1.24976 0.95868 0.95746 0.98048 1.69947 0.98595 1.48915 1.36677 0.86582 0.76744 0.79141 0.85068 1.20180 1.21445 1.20330 1.22226 0.99833 0.92882 0.92171 1.22789 0.91484 0.94623 0.88269 0.91066 1.23319 0.97742 0.99339 0.98599 1.22660 0.95157 0.98575 0.96891 0.89601 1.21252 0.93798 1.00197 0.99493 1.21268 0.97246 1.00822 0.96124 1.21493 0.97644 1.01039 0.95174 1.21044 0.93321 0.98732 1.01428 1.22201 0.95961 0.88316 0.91644 0.93003 1.89078 1.51847 1.33135 1.51332 0.92204 0.93763 0.93767 0.89769 0.96880 0.99525 0.95222 0.93002 0.91609 0.94955 0.90626 0.91113 0.91453 0.92299 0.92631 0.92206 0.92303 0.90811 0.91370 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.00 37.16 0.37 -2.00 16 2 C 0.06 1.17 5.52 -3.82 -0.02 1.15 16 3 N -0.53 -11.80 4.32 -236.07 -1.02 -12.82 16 4 C 0.19 5.14 4.55 -4.97 -0.02 5.12 16 5 C -0.50 -14.46 8.28 -34.44 -0.29 -14.74 16 6 H 0.06 1.80 7.26 -52.49 -0.38 1.42 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.08 4.30 -3.83 -0.02 1.06 16 14 C 0.09 1.52 3.39 -26.09 -0.09 1.43 16 15 H 0.07 1.44 6.76 -51.93 -0.35 1.09 16 16 C -0.15 -2.02 5.97 -24.67 -0.15 -2.17 16 17 C -0.11 -1.36 3.63 -88.65 -0.32 -1.68 16 18 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.11 -1.23 4.74 -27.54 -0.13 -1.36 16 20 C -0.12 -1.18 5.84 -27.41 -0.16 -1.34 16 21 C -0.12 -1.32 5.94 -26.67 -0.16 -1.47 16 22 C -0.11 -1.29 5.60 -27.77 -0.16 -1.45 16 23 C 0.08 1.08 3.07 -27.16 -0.08 1.00 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 O -0.34 -6.11 10.60 -35.23 -0.37 -6.49 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.70 6.51 -51.93 -0.34 0.36 16 29 H 0.08 1.88 6.59 -51.93 -0.34 1.54 16 30 H 0.01 0.26 8.05 -51.93 -0.42 -0.16 16 31 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 32 H 0.03 0.84 6.62 -51.93 -0.34 0.50 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 1.13 5.62 -51.93 -0.29 0.84 16 35 H 0.03 0.61 8.00 -51.93 -0.42 0.19 16 36 H 0.08 0.94 7.30 -51.93 -0.38 0.56 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.88 7.20 -51.93 -0.37 0.51 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.64 339.28 -10.14 -40.78 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.26 Total: -2.25 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.32 Total: -14.97 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.28 Total: -39.30 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.37 Total: -6.49 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.64 -10.14 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379145983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.712 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds