Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46847 * 2 1 4 4 C 1.46904 * 110.99983 * 196.08788 * 3 2 1 5 5 C 1.50700 * 109.47063 * 66.04822 * 4 3 2 6 6 H 1.07999 * 120.00350 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99984 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99884 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47319 * 59.99490 * 9 7 5 11 11 H 1.48500 * 109.46986 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47334 * 299.99566 * 9 7 5 13 13 C 1.46899 * 111.00086 * 72.13507 * 3 2 1 14 14 C 1.52996 * 109.47332 * 199.80459 * 13 3 2 15 15 H 1.09005 * 109.86181 * 302.22819 * 14 13 3 16 16 C 1.54226 * 109.87515 * 181.23048 * 14 13 3 17 17 C 1.55671 * 103.93981 * 240.13457 * 16 14 13 18 18 H 1.09001 * 112.62775 * 217.04750 * 17 16 14 19 19 C 1.53015 * 106.60506 * 93.45546 * 17 16 14 20 20 C 1.51385 * 111.47880 * 198.47674 * 19 17 16 21 21 C 1.53259 * 109.52363 * 60.16067 * 20 19 17 22 22 C 1.52856 * 108.34347 * 297.37772 * 21 20 19 23 23 C 1.51076 * 111.36555 * 59.17038 * 22 21 20 24 24 H 1.08995 * 109.01164 * 185.53300 * 23 22 21 25 25 O 1.43589 * 112.30071 * 64.85008 * 23 22 21 26 26 H 1.08997 * 109.47483 * 61.15816 * 1 2 3 27 27 H 1.09005 * 109.46745 * 181.15942 * 1 2 3 28 28 H 1.09002 * 109.47082 * 301.15559 * 1 2 3 29 29 H 1.09005 * 109.46872 * 240.00440 * 2 1 3 30 30 H 1.09000 * 109.47798 * 120.00205 * 2 1 3 31 31 H 1.08995 * 109.46827 * 306.05086 * 4 3 2 32 32 H 1.08997 * 109.47306 * 186.04813 * 4 3 2 33 33 H 0.96994 * 120.00019 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46883 * 319.80639 * 13 3 2 35 35 H 1.08999 * 109.46839 * 79.79795 * 13 3 2 36 36 H 1.08999 * 110.53469 * 358.74620 * 16 14 13 37 37 H 1.09001 * 110.53238 * 121.37957 * 16 14 13 38 38 H 1.08999 * 109.21194 * 317.01308 * 19 17 16 39 39 H 1.08999 * 109.21405 * 76.33965 * 19 17 16 40 40 H 1.09003 * 108.54850 * 300.51991 * 20 19 17 41 41 H 1.09001 * 109.91438 * 180.64756 * 20 19 17 42 42 H 1.08999 * 109.69252 * 177.65832 * 21 20 19 43 43 H 1.09005 * 109.71795 * 57.10923 * 21 20 19 44 44 H 1.08993 * 109.10275 * 298.68641 * 22 21 20 45 45 H 1.09003 * 109.05237 * 179.61828 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4375 1.4422 -0.3800 5 6 3.5909 1.0078 -1.8149 6 1 2.7221 0.7178 -2.3872 7 6 4.8405 0.9795 -2.3968 8 7 5.8985 1.3322 -1.6999 9 14 5.0307 0.4403 -4.1752 10 1 4.2463 1.3452 -5.0534 11 1 6.4639 0.4982 -4.5594 12 1 4.5329 -0.9506 -4.3267 13 6 1.7984 2.0216 1.3053 14 6 1.8460 3.5425 1.1456 15 1 2.8050 3.8405 0.7216 16 6 1.6455 4.2201 2.5165 17 6 0.3621 5.0803 2.3254 18 1 0.4135 6.0330 2.8525 19 6 -0.8141 4.2206 2.7933 20 6 -2.1299 4.7420 2.2562 21 6 -2.1007 4.7247 0.7240 22 6 -0.9955 5.6699 0.2533 23 6 0.3521 5.2541 0.7950 24 1 1.0926 6.0048 0.5193 25 8 0.7737 3.9789 0.2871 26 1 -0.3634 0.4957 -0.9001 27 1 -0.3633 -1.0275 0.0208 28 1 -0.3633 0.5317 0.8795 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 4.0133 0.7779 0.2642 32 1 3.8027 2.4631 -0.2685 33 1 6.7776 1.3126 -2.1094 34 1 0.8229 1.7272 1.6924 35 1 2.5758 1.7047 2.0004 36 1 1.4919 3.4719 3.2940 37 1 2.4995 4.8525 2.7590 38 1 -0.6879 3.2052 2.4178 39 1 -0.8321 4.1997 3.8830 40 1 -2.2672 5.7646 2.6080 41 1 -2.9499 4.1190 2.6137 42 1 -3.0617 5.0604 0.3345 43 1 -1.8945 3.7140 0.3715 44 1 -1.2208 6.6802 0.5946 45 1 -0.9600 5.6612 -0.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379145983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -82.211280 kcal Electronic energy + Delta-G solvation = -21974.640372 eV Core-core repulsion = 18990.204839 eV Total energy + Delta-G solvation = -2984.435534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41454 -38.62360 -36.61266 -34.78318 -33.75780 -31.91182 -30.91966 -30.51444 -28.32158 -25.97052 -24.33130 -23.36493 -23.05715 -21.85805 -21.31888 -20.12946 -18.63874 -17.48311 -17.13684 -16.51631 -16.15970 -15.93943 -15.66035 -15.29742 -15.06417 -14.63541 -14.36449 -14.22367 -13.96570 -13.91051 -13.26598 -13.06896 -12.83538 -12.72957 -12.71821 -12.58361 -12.53946 -12.42484 -12.35375 -12.09148 -11.90622 -11.66686 -11.62309 -11.39724 -11.13272 -10.93496 -10.90842 -10.61025 -10.29085 -8.91599 -8.20919 -6.30250 1.38308 1.42311 1.50099 2.39460 2.96445 3.11062 3.32640 3.57573 3.71695 3.94304 3.98635 4.08702 4.20311 4.25686 4.35535 4.37103 4.47506 4.53723 4.56505 4.61238 4.68235 4.71419 4.73809 4.80594 4.87513 4.96898 5.00704 5.06430 5.09985 5.15588 5.17420 5.20630 5.32311 5.33561 5.40323 5.40758 5.42553 5.45463 5.63162 5.65661 6.06626 6.23721 6.41179 6.70662 6.85851 7.38855 8.90169 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005033 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.034068 B = 5561.720250 C = 5706.185653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.055 3.945 3 N -0.537 5.537 4 C 0.211 3.789 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.060 3.940 14 C 0.086 3.914 15 H 0.030 0.970 16 C -0.145 4.145 17 C -0.102 4.102 18 H 0.114 0.886 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.107 4.107 23 C 0.065 3.935 24 H 0.043 0.957 25 O -0.366 6.366 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.019 0.981 31 H -0.042 1.042 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 7.564 10.632 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 N -0.261 5.261 4 C 0.085 3.915 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.191 1.191 13 C -0.068 4.068 14 C 0.028 3.972 15 H 0.048 0.952 16 C -0.183 4.183 17 C -0.120 4.120 18 H 0.132 0.868 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.144 4.144 23 C 0.008 3.992 24 H 0.061 0.939 25 O -0.285 6.285 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.037 0.963 31 H -0.024 1.024 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.816 7.709 10.079 20.277 hybrid contribution 1.634 -0.690 -0.376 1.813 sum -14.182 7.019 9.703 18.562 Atomic orbital electron populations 1.21651 0.93423 1.01614 1.01703 1.21999 0.96661 0.89050 0.99615 1.62008 1.19398 1.17170 1.27552 1.19350 0.83457 0.93968 0.94736 1.21417 0.92961 1.43982 0.97607 0.92353 1.25899 0.95361 0.95482 1.02846 1.70076 0.99143 1.49604 1.38745 0.85457 0.77064 0.79126 0.79101 1.19640 1.20548 1.19078 1.22306 1.00648 0.93549 0.90290 1.22662 0.89826 0.94140 0.90573 0.95199 1.23283 0.99209 0.99785 0.95989 1.22677 0.94529 0.99659 0.95151 0.86779 1.21266 0.93952 0.98683 1.00715 1.21250 0.96895 1.02181 0.94671 1.21476 0.98038 0.99165 0.96552 1.21085 0.92451 1.00394 1.00461 1.22502 0.96803 0.86365 0.93566 0.93853 1.89037 1.51721 1.35229 1.52534 0.93406 0.90851 0.92498 0.92335 0.96256 1.02450 0.98043 0.92699 0.89438 0.95232 0.89229 0.90254 0.93736 0.90166 0.90681 0.91080 0.90603 0.93707 0.88549 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 10.00 71.98 0.72 -3.39 16 2 C 0.05 2.27 5.52 86.30 0.48 2.74 16 3 N -0.54 -25.05 4.32 -900.78 -3.89 -28.94 16 4 C 0.21 11.95 4.55 85.56 0.39 12.34 16 5 C -0.52 -31.21 8.28 25.60 0.21 -31.00 16 6 H 0.06 3.47 7.26 -2.91 -0.02 3.45 16 7 C 0.00 0.11 5.46 84.66 0.46 0.57 16 8 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 9 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.06 2.31 4.30 86.30 0.37 2.68 16 14 C 0.09 3.15 3.39 31.01 0.10 3.26 16 15 H 0.03 1.32 6.76 -2.38 -0.02 1.30 16 16 C -0.14 -3.71 5.97 31.93 0.19 -3.52 16 17 C -0.10 -2.18 3.63 -9.52 -0.03 -2.22 16 18 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.11 -2.10 4.74 30.07 0.14 -1.96 16 20 C -0.11 -1.89 5.84 30.15 0.18 -1.71 16 21 C -0.11 -2.39 5.94 30.63 0.18 -2.21 16 22 C -0.11 -2.41 5.60 29.92 0.17 -2.24 16 23 C 0.07 1.80 3.07 30.31 0.09 1.89 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 25 O -0.37 -13.74 10.60 -148.98 -1.58 -15.31 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.06 1.70 6.51 -2.39 -0.02 1.68 16 29 H 0.06 2.70 6.59 -2.38 -0.02 2.68 16 30 H 0.02 0.76 8.05 -2.39 -0.02 0.75 16 31 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 32 H 0.00 0.09 6.62 -2.39 -0.02 0.08 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 34 H 0.09 2.95 5.62 -2.39 -0.01 2.94 16 35 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 36 H 0.09 2.06 7.30 -2.39 -0.02 2.04 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.07 7.20 -2.39 -0.02 1.05 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.19 8.06 -2.38 -0.02 1.17 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.34 339.28 1.42 -67.91 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.93 Total: 10.89 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.65 Total: -24.77 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.60 Total: -86.81 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -1.58 Total: -15.31 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.34 1.42 -67.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379145983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.300 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds