Wall clock time and date at job start Mon Mar 30 2020 08:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00115 * 2 1 4 4 H 1.08998 * 109.46717 * 330.00057 * 3 2 1 5 5 C 1.53001 * 109.47122 * 89.99898 * 3 2 1 6 6 C 1.53002 * 109.47061 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47039 * 300.00216 * 6 5 3 8 8 C 1.53001 * 109.47371 * 59.99973 * 7 6 5 9 9 C 1.53001 * 109.47135 * 210.00210 * 3 2 1 10 10 H 1.08998 * 109.47193 * 299.99556 * 9 3 2 11 11 N 1.46496 * 109.47448 * 59.99671 * 9 3 2 12 12 C 1.36939 * 119.99729 * 53.72695 * 11 9 3 13 13 H 1.07998 * 120.00028 * 237.66953 * 12 11 9 14 14 C 1.38812 * 120.00084 * 57.66768 * 12 11 9 15 15 N 1.31619 * 119.99880 * 37.18296 * 14 12 11 16 16 Si 1.86800 * 119.99993 * 217.18468 * 14 12 11 17 17 H 1.48499 * 109.47390 * 269.99662 * 16 14 12 18 18 H 1.48501 * 109.47282 * 30.00188 * 16 14 12 19 19 H 1.48501 * 109.46977 * 150.00043 * 16 14 12 20 20 C 1.46497 * 120.00286 * 233.73162 * 11 9 3 21 21 C 1.54266 * 110.03029 * 237.16383 * 20 11 9 22 22 C 1.54885 * 104.19915 * 217.10412 * 21 20 11 23 23 C 1.54895 * 102.74701 * 37.94271 * 22 21 20 24 24 C 1.53873 * 110.03517 * 119.99802 * 20 11 9 25 25 H 1.08991 * 109.47551 * 60.00139 * 1 2 3 26 26 H 1.09002 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47231 * 299.99695 * 1 2 3 28 28 H 1.09005 * 109.46815 * 60.00380 * 5 3 2 29 29 H 1.08995 * 109.47174 * 299.99934 * 5 3 2 30 30 H 1.08999 * 109.47155 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.46874 * 60.00101 * 6 5 3 32 32 H 1.09005 * 109.47324 * 300.00072 * 7 6 5 33 33 H 1.09004 * 109.47097 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47174 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.47194 * 59.99717 * 8 7 6 36 36 H 0.97004 * 119.99815 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.01522 * 358.60358 * 20 11 9 38 38 H 1.09003 * 110.48995 * 335.78177 * 21 20 11 39 39 H 1.09000 * 110.48868 * 98.42436 * 21 20 11 40 40 H 1.09007 * 110.75495 * 279.62954 * 22 21 20 41 41 H 1.08997 * 110.75998 * 156.25947 * 22 21 20 42 42 H 1.08997 * 110.48467 * 203.38616 * 23 22 21 43 43 H 1.08990 * 110.59618 * 80.79570 * 23 22 21 44 44 H 1.08999 * 110.03098 * 238.56884 * 24 20 11 45 45 H 1.09000 * 110.03273 * 359.94968 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8394 3.1694 1.4425 7 6 4.1880 3.1277 0.7210 8 6 3.9805 2.6618 -0.7215 9 6 3.3589 1.2632 -0.7213 10 1 4.0241 0.5694 -0.2075 11 7 3.1603 0.8171 -2.1025 12 6 2.2586 1.4612 -2.9071 13 1 1.4469 0.9096 -3.3580 14 6 2.3878 2.8230 -3.1430 15 7 3.5832 3.3572 -3.2765 16 14 0.8650 3.8973 -3.2709 17 1 0.4121 3.9478 -4.6843 18 1 -0.2148 3.3283 -2.4251 19 1 1.1872 5.2701 -2.8051 20 6 3.9262 -0.3181 -2.6229 21 6 4.7174 0.1085 -3.8766 22 6 4.6528 -1.1288 -4.8059 23 6 3.2146 -1.6553 -4.5747 24 6 2.9707 -1.4396 -3.0667 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.8829 1.0774 1.9563 29 1 1.2568 1.8015 1.9563 30 1 2.9876 3.5011 2.4701 31 1 2.1738 3.8630 0.9288 32 1 4.8536 2.4340 1.2347 33 1 4.6311 4.1236 0.7214 34 1 4.9413 2.6317 -1.2353 35 1 3.3149 3.3554 -1.2352 36 1 3.6735 4.3089 -3.4410 37 1 4.6085 -0.6897 -1.8584 38 1 4.2444 0.9678 -4.3521 39 1 5.7510 0.3365 -3.6162 40 1 5.3898 -1.8747 -4.5079 41 1 4.7951 -0.8381 -5.8467 42 1 3.1515 -2.7146 -4.8236 43 1 2.4975 -1.0827 -5.1629 44 1 3.1899 -2.3557 -2.5182 45 1 1.9371 -1.1396 -2.8941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379901206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:43 Heat of formation + Delta-G solvation = -52.488794 kcal Electronic energy + Delta-G solvation = -23096.881324 eV Core-core repulsion = 20113.734654 eV Total energy + Delta-G solvation = -2983.146670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36126 -38.69769 -37.12327 -35.35403 -33.12352 -30.81742 -30.03780 -29.19892 -28.01909 -27.07886 -25.28399 -22.92971 -22.46061 -21.21005 -20.90411 -20.25999 -18.20952 -17.25161 -16.86551 -16.56445 -16.10210 -16.00839 -15.72195 -15.36604 -14.74723 -14.40991 -14.15894 -14.09193 -13.92756 -13.60569 -13.37096 -13.12493 -12.85661 -12.59521 -12.40736 -12.32775 -12.03615 -11.91738 -11.79520 -11.70142 -11.69415 -11.61334 -11.42868 -11.27621 -11.19664 -11.05958 -10.90193 -10.09232 -9.77760 -8.31927 -7.51204 -5.43092 1.35746 1.45061 1.50941 2.51186 3.10414 3.15320 3.62369 4.00700 4.10319 4.12861 4.20274 4.23773 4.40385 4.47057 4.51490 4.61185 4.68000 4.75371 4.75588 4.80195 4.85691 4.89911 4.91606 4.97163 5.02035 5.09581 5.11170 5.16637 5.24287 5.28104 5.33084 5.36648 5.41643 5.44621 5.48752 5.66490 5.72205 5.81674 5.87910 5.99877 6.05975 6.60426 6.73645 7.38924 7.97666 8.71264 9.07796 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.009778 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.618210 B = 2862.824294 C = 3312.348216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.390 6.390 3 C 0.095 3.905 4 H 0.034 0.966 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.111 4.111 9 C 0.192 3.808 10 H 0.041 0.959 11 N -0.576 5.576 12 C -0.269 4.269 13 H 0.022 0.978 14 C 0.030 3.970 15 N -0.855 5.855 16 Si 0.890 3.110 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.288 1.288 20 C 0.168 3.832 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.119 4.119 25 H 0.019 0.981 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.250 0.750 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -4.603 6.600 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.309 6.309 3 C 0.036 3.964 4 H 0.053 0.947 5 C -0.170 4.170 6 C -0.146 4.146 7 C -0.158 4.158 8 C -0.151 4.151 9 C 0.085 3.915 10 H 0.059 0.941 11 N -0.296 5.296 12 C -0.399 4.399 13 H 0.040 0.960 14 C -0.174 4.174 15 N -0.493 5.493 16 Si 0.717 3.283 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.213 1.213 20 C 0.062 3.938 21 C -0.161 4.161 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.158 4.158 25 H 0.038 0.962 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.613 -4.613 6.559 8.042 hybrid contribution -1.025 1.320 -0.458 1.733 sum -1.638 -3.293 6.101 7.123 Atomic orbital electron populations 1.22703 0.81585 1.02580 0.99094 1.87809 1.19583 1.28528 1.94953 1.22426 0.96075 0.83587 0.94350 0.94736 1.22003 1.01267 0.97313 0.96461 1.21435 0.96283 0.95999 1.00862 1.21656 0.97289 1.00760 0.96131 1.22048 1.00200 0.98311 0.94496 1.20504 0.92327 0.93810 0.84841 0.94094 1.43779 1.45108 1.34021 1.06666 1.18051 1.03820 0.90161 1.27832 0.96031 1.25626 0.95719 1.00148 0.95913 1.70505 1.22821 1.11632 1.44319 0.86593 0.84316 0.79514 0.77835 1.21402 1.20199 1.21339 1.21178 0.91011 0.88286 0.93330 1.22625 0.97857 0.98154 0.97462 1.22396 0.96868 0.97218 0.98751 1.22181 0.96526 0.99991 0.96044 1.22384 0.99980 0.97818 0.95651 0.96179 0.88828 0.93627 0.91066 0.91441 0.89647 0.93643 0.91852 0.92392 0.94785 0.91850 0.93979 0.94250 0.92203 0.94849 0.90873 0.92360 0.90823 0.93873 0.92587 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.82 113.37 1.23 2.45 16 2 O -0.39 -15.53 10.21 -148.98 -1.52 -17.05 16 3 C 0.09 3.81 1.80 30.60 0.06 3.87 16 4 H 0.03 1.58 7.18 -2.39 -0.02 1.57 16 5 C -0.13 -4.23 5.54 30.60 0.17 -4.06 16 6 C -0.11 -3.31 5.92 30.60 0.18 -3.12 16 7 C -0.12 -4.08 5.92 30.60 0.18 -3.90 16 8 C -0.11 -4.84 3.93 30.61 0.12 -4.72 16 9 C 0.19 8.42 2.33 45.01 0.10 8.52 16 10 H 0.04 1.77 7.59 -2.39 -0.02 1.76 16 11 N -0.58 -27.43 2.15 -650.18 -1.40 -28.83 16 12 C -0.27 -14.01 6.06 84.03 0.51 -13.50 16 13 H 0.02 1.25 7.44 -2.91 -0.02 1.22 16 14 C 0.03 1.55 3.48 84.86 0.30 1.84 16 15 N -0.86 -45.97 10.91 21.65 0.24 -45.74 16 16 Si 0.89 42.04 29.68 68.60 2.04 44.08 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 20 C 0.17 7.33 3.44 45.72 0.16 7.49 16 21 C -0.12 -5.26 6.41 31.67 0.20 -5.06 16 22 C -0.11 -3.95 6.91 31.89 0.22 -3.73 16 23 C -0.11 -3.83 6.83 31.67 0.22 -3.61 16 24 C -0.12 -4.67 6.28 31.32 0.20 -4.47 16 25 H 0.02 0.73 8.08 -2.39 -0.02 0.71 16 26 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.05 1.29 7.87 -2.39 -0.02 1.27 16 28 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.07 1.93 7.87 -2.39 -0.02 1.91 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.03 1.64 7.96 -2.39 -0.02 1.62 16 35 H 0.06 3.12 4.89 -2.39 -0.01 3.11 16 36 H 0.25 13.18 8.31 -92.71 -0.77 12.40 16 37 H 0.04 1.67 7.60 -2.39 -0.02 1.66 16 38 H 0.06 3.09 6.80 -2.39 -0.02 3.07 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 2.19 8.14 -2.38 -0.02 2.18 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.97 6.98 -2.39 -0.02 1.96 16 Total: -1.00 -56.23 336.22 4.11 -52.12 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.92 Total: 17.44 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.84 Total: -22.02 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.16 Total: -74.57 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.52 Total: -17.05 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.04 Total: 44.08 kcal Total: -56.23 4.11 -52.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379901206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.366 kcal (2) G-P(sol) polarization free energy of solvation -56.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds