Wall clock time and date at job start Mon Mar 30 2020 09:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53005 * 109.46817 * 181.47692 * 3 2 1 5 5 N 1.46895 * 110.05652 * 304.98038 * 4 3 2 6 6 C 1.46907 * 111.00266 * 299.52515 * 5 4 3 7 7 C 1.52998 * 109.47000 * 174.59739 * 6 5 4 8 8 C 1.53001 * 109.47016 * 299.99492 * 7 6 5 9 9 C 1.52992 * 109.47684 * 59.99827 * 7 6 5 10 10 C 1.52996 * 109.46807 * 180.02562 * 7 6 5 11 11 C 1.50695 * 109.47295 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00051 * 359.97438 * 11 10 7 13 13 C 1.37874 * 120.00356 * 179.97438 * 11 10 7 14 14 N 1.31522 * 120.00332 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99951 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47234 * 90.00031 * 15 13 11 17 17 H 1.48507 * 109.47216 * 210.00203 * 15 13 11 18 18 H 1.48494 * 109.47167 * 329.99792 * 15 13 11 19 19 C 1.53883 * 110.02755 * 183.56805 * 4 3 2 20 20 C 1.54264 * 106.59720 * 240.71289 * 19 4 3 21 21 C 1.54890 * 104.19700 * 336.39415 * 20 19 4 22 22 C 1.54260 * 110.03256 * 66.40203 * 4 3 2 23 23 H 1.09001 * 109.46938 * 60.00127 * 1 2 3 24 24 H 1.08993 * 109.47896 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47060 * 300.00768 * 1 2 3 26 26 H 1.08995 * 109.46826 * 239.99182 * 2 1 3 27 27 H 1.09003 * 109.46509 * 119.99563 * 2 1 3 28 28 H 1.08991 * 109.47453 * 61.47278 * 3 2 1 29 29 H 1.09006 * 109.46692 * 301.46864 * 3 2 1 30 30 H 1.00893 * 111.00246 * 175.56453 * 5 4 3 31 31 H 1.08996 * 109.46891 * 294.59464 * 6 5 4 32 32 H 1.08997 * 109.46827 * 54.59454 * 6 5 4 33 33 H 1.08995 * 109.47189 * 60.00290 * 8 7 6 34 34 H 1.09000 * 109.47368 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47348 * 300.00378 * 8 7 6 36 36 H 1.09005 * 109.46908 * 59.99551 * 9 7 6 37 37 H 1.08991 * 109.47743 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47024 * 299.99886 * 9 7 6 39 39 H 1.08996 * 109.46957 * 299.99646 * 10 7 6 40 40 H 1.08997 * 109.47692 * 59.99852 * 10 7 6 41 41 H 0.96995 * 120.00163 * 179.97438 * 14 13 11 42 42 H 1.08994 * 110.02961 * 121.43147 * 19 4 3 43 43 H 1.09004 * 110.03273 * 359.97438 * 19 4 3 44 44 H 1.08996 * 110.48602 * 95.06676 * 20 19 4 45 45 H 1.08999 * 110.48769 * 217.71532 * 20 19 4 46 46 H 1.09000 * 110.76177 * 156.25763 * 21 20 19 47 47 H 1.09004 * 110.75562 * 279.62729 * 21 20 19 48 48 H 1.08994 * 110.49202 * 24.21572 * 22 4 3 49 49 H 1.09000 * 110.48805 * 261.57054 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5696 1.4425 -0.0372 5 7 4.1006 0.6417 1.0740 6 6 3.6776 1.1921 2.3688 7 6 4.1344 0.2600 3.4928 8 6 3.5068 -1.1215 3.2964 9 6 5.6590 0.1362 3.4649 10 6 3.6933 0.8328 4.8411 11 6 4.1426 -0.0854 5.9483 12 1 4.6879 -0.9877 5.7137 13 6 3.8577 0.2262 7.2608 14 7 4.2494 -0.5756 8.2270 15 14 2.9152 1.7870 7.6667 16 1 1.4589 1.4968 7.6794 17 1 3.3326 2.2841 9.0024 18 1 3.2049 2.8211 6.6411 19 6 4.0990 2.8846 0.0524 20 6 4.8981 3.1418 -1.2418 21 6 5.3129 1.7280 -1.7195 22 6 4.0655 0.8737 -1.3826 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6985 1.9486 0.9028 29 1 1.6553 1.9638 -0.8766 30 1 5.1057 0.5722 1.0216 31 1 4.1246 2.1762 2.5087 32 1 2.5914 1.2802 2.3886 33 1 3.8206 -1.5299 2.3358 34 1 3.8319 -1.7855 4.0974 35 1 2.4206 -1.0333 3.3163 36 1 6.1061 1.1205 3.6047 37 1 5.9844 -0.5281 4.2653 38 1 5.9729 -0.2722 2.5042 39 1 4.1400 1.8172 4.9813 40 1 2.6071 0.9207 4.8608 41 1 4.0492 -0.3561 9.1504 42 1 4.7498 2.9902 0.9202 43 1 3.2661 3.5844 0.1218 44 1 4.2695 3.6274 -1.9882 45 1 5.7797 3.7474 -1.0318 46 1 5.5058 1.7238 -2.7923 47 1 6.1839 1.3740 -1.1680 48 1 3.3025 0.9931 -2.1518 49 1 4.3395 -0.1758 -1.2754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382326084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:00:53 Heat of formation + Delta-G solvation = -40.773132 kcal Electronic energy + Delta-G solvation = -22233.046287 eV Core-core repulsion = 19386.240741 eV Total energy + Delta-G solvation = -2846.805546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.73769 -36.88951 -34.40622 -32.92639 -31.80203 -28.88817 -28.67724 -27.38730 -26.34252 -25.54177 -24.31886 -22.00096 -21.47476 -20.52525 -18.75188 -17.81254 -16.75627 -15.92701 -15.74098 -14.95390 -14.44298 -14.21995 -13.99233 -13.64602 -13.34603 -13.22822 -13.01378 -12.62805 -12.40617 -12.24076 -12.05606 -11.92402 -11.45274 -11.24956 -11.18739 -11.04752 -11.01023 -10.91522 -10.80355 -10.66489 -10.59567 -10.43894 -10.36193 -10.28218 -10.15246 -9.70798 -9.63745 -9.20932 -8.85888 -8.46932 -7.99399 -5.97343 -3.93044 3.33724 3.41266 3.44884 4.35627 4.50609 4.52671 4.61265 4.84647 5.07703 5.18469 5.28174 5.35786 5.37212 5.46279 5.53293 5.57601 5.64635 5.67672 5.74216 5.79567 5.81069 5.87362 5.93793 5.94415 5.97655 6.01429 6.12164 6.16376 6.21296 6.27816 6.33117 6.35033 6.48587 6.50934 6.63390 6.66118 6.79010 6.85090 7.13813 7.19889 7.26283 7.38940 7.45420 7.51936 7.75783 7.89309 8.63252 9.09100 9.66154 11.15866 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.005071 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.426430 B = 5520.091516 C = 5895.594402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.101 4.101 4 C 0.113 3.887 5 N -0.668 5.668 6 C 0.064 3.936 7 C -0.046 4.046 8 C -0.116 4.116 9 C -0.129 4.129 10 C -0.005 4.005 11 C -0.505 4.505 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.268 1.268 19 C -0.156 4.156 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.111 4.111 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.338 0.662 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 5.011 -20.509 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.139 4.139 4 C 0.022 3.978 5 N -0.299 5.299 6 C -0.065 4.065 7 C -0.046 4.046 8 C -0.174 4.174 9 C -0.186 4.186 10 C -0.042 4.042 11 C -0.543 4.543 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.196 4.196 20 C -0.160 4.160 21 C -0.166 4.166 22 C -0.149 4.149 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.029 0.971 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.295 4.521 -20.333 20.956 hybrid contribution 0.005 1.817 0.560 1.901 sum -2.290 6.338 -19.773 20.890 Atomic orbital electron populations 1.21812 0.97009 1.01204 1.01063 1.21433 0.94173 0.96574 1.03232 1.21688 0.93468 0.97610 1.01144 1.21561 0.94708 0.89922 0.91627 1.60701 1.16039 1.51738 1.01430 1.22176 1.00167 0.95758 0.88359 1.20378 0.94980 0.95239 0.94030 1.21609 0.99082 0.96423 1.00247 1.21759 0.95703 1.00926 1.00257 1.19626 0.95621 0.96342 0.92648 1.21147 1.35505 1.08167 0.89462 0.90439 1.25013 0.95658 0.96340 0.96576 1.69912 1.47550 1.37440 0.99718 0.86862 0.80560 0.84783 0.77535 1.20470 1.21617 1.19231 1.23003 1.00000 0.98491 0.98072 1.22307 0.99400 0.97065 0.97201 1.22532 0.98209 0.95364 1.00454 1.22440 0.96860 0.99956 0.95674 0.93606 0.93069 0.93026 0.92573 0.89957 0.92149 0.92531 0.84305 0.95933 0.91366 0.93553 0.92357 0.94397 0.94367 0.91394 0.94509 0.97099 0.97301 0.92944 0.91465 0.91896 0.91996 0.92178 0.91899 0.91601 0.91447 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.37 5.56 -26.73 -0.15 -1.52 16 3 C -0.10 -1.16 3.42 -26.73 -0.09 -1.25 16 4 C 0.11 1.28 0.52 -130.48 -0.07 1.22 16 5 N -0.67 -8.82 4.25 -98.83 -0.42 -9.24 16 6 C 0.06 1.02 3.90 -3.82 -0.01 1.01 16 7 C -0.05 -0.87 0.60 -154.52 -0.09 -0.97 16 8 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 9 C -0.13 -2.37 7.89 37.15 0.29 -2.08 16 10 C 0.00 -0.11 3.11 -27.89 -0.09 -0.19 16 11 C -0.50 -13.99 8.20 -34.44 -0.28 -14.27 16 12 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.94 13.96 55.43 0.77 -27.16 16 15 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 19 C -0.16 -1.75 5.66 -25.61 -0.14 -1.89 16 20 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 21 C -0.13 -1.17 6.91 -24.74 -0.17 -1.34 16 22 C -0.11 -1.11 5.08 -25.07 -0.13 -1.23 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.63 7.41 -51.93 -0.38 0.24 16 27 H 0.08 1.15 7.49 -51.93 -0.39 0.76 16 28 H 0.06 0.77 6.62 -51.93 -0.34 0.42 16 29 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 30 H 0.34 4.43 7.00 -39.30 -0.27 4.16 16 31 H 0.02 0.37 6.55 -51.93 -0.34 0.03 16 32 H 0.07 1.13 6.20 -51.93 -0.32 0.81 16 33 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 34 H 0.06 1.25 6.61 -51.93 -0.34 0.90 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 38 H 0.04 0.57 6.70 -51.93 -0.35 0.23 16 39 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 40 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 43 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 49 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -28.60 356.62 -8.98 -37.58 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.51 Total: 1.44 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -0.54 Total: -25.29 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.35 Total: -36.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.60 -8.98 -37.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382326084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.194 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds