Wall clock time and date at job start Mon Mar 30 2020 09:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53005 * 109.46817 * 181.47692 * 3 2 1 5 5 N 1.46895 * 110.05652 * 304.98038 * 4 3 2 6 6 C 1.46907 * 111.00266 * 299.52515 * 5 4 3 7 7 C 1.52998 * 109.47000 * 174.59739 * 6 5 4 8 8 C 1.53001 * 109.47016 * 299.99492 * 7 6 5 9 9 C 1.52992 * 109.47684 * 59.99827 * 7 6 5 10 10 C 1.52996 * 109.46807 * 180.02562 * 7 6 5 11 11 C 1.50695 * 109.47295 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00051 * 359.97438 * 11 10 7 13 13 C 1.37874 * 120.00356 * 179.97438 * 11 10 7 14 14 N 1.31522 * 120.00332 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99951 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47234 * 90.00031 * 15 13 11 17 17 H 1.48507 * 109.47216 * 210.00203 * 15 13 11 18 18 H 1.48494 * 109.47167 * 329.99792 * 15 13 11 19 19 C 1.53883 * 110.02755 * 183.56805 * 4 3 2 20 20 C 1.54264 * 106.59720 * 240.71289 * 19 4 3 21 21 C 1.54890 * 104.19700 * 336.39415 * 20 19 4 22 22 C 1.54260 * 110.03256 * 66.40203 * 4 3 2 23 23 H 1.09001 * 109.46938 * 60.00127 * 1 2 3 24 24 H 1.08993 * 109.47896 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47060 * 300.00768 * 1 2 3 26 26 H 1.08995 * 109.46826 * 239.99182 * 2 1 3 27 27 H 1.09003 * 109.46509 * 119.99563 * 2 1 3 28 28 H 1.08991 * 109.47453 * 61.47278 * 3 2 1 29 29 H 1.09006 * 109.46692 * 301.46864 * 3 2 1 30 30 H 1.00893 * 111.00246 * 175.56453 * 5 4 3 31 31 H 1.08996 * 109.46891 * 294.59464 * 6 5 4 32 32 H 1.08997 * 109.46827 * 54.59454 * 6 5 4 33 33 H 1.08995 * 109.47189 * 60.00290 * 8 7 6 34 34 H 1.09000 * 109.47368 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47348 * 300.00378 * 8 7 6 36 36 H 1.09005 * 109.46908 * 59.99551 * 9 7 6 37 37 H 1.08991 * 109.47743 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47024 * 299.99886 * 9 7 6 39 39 H 1.08996 * 109.46957 * 299.99646 * 10 7 6 40 40 H 1.08997 * 109.47692 * 59.99852 * 10 7 6 41 41 H 0.96995 * 120.00163 * 179.97438 * 14 13 11 42 42 H 1.08994 * 110.02961 * 121.43147 * 19 4 3 43 43 H 1.09004 * 110.03273 * 359.97438 * 19 4 3 44 44 H 1.08996 * 110.48602 * 95.06676 * 20 19 4 45 45 H 1.08999 * 110.48769 * 217.71532 * 20 19 4 46 46 H 1.09000 * 110.76177 * 156.25763 * 21 20 19 47 47 H 1.09004 * 110.75562 * 279.62729 * 21 20 19 48 48 H 1.08994 * 110.49202 * 24.21572 * 22 4 3 49 49 H 1.09000 * 110.48805 * 261.57054 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5696 1.4425 -0.0372 5 7 4.1006 0.6417 1.0740 6 6 3.6776 1.1921 2.3688 7 6 4.1344 0.2600 3.4928 8 6 3.5068 -1.1215 3.2964 9 6 5.6590 0.1362 3.4649 10 6 3.6933 0.8328 4.8411 11 6 4.1426 -0.0854 5.9483 12 1 4.6879 -0.9877 5.7137 13 6 3.8577 0.2262 7.2608 14 7 4.2494 -0.5756 8.2270 15 14 2.9152 1.7870 7.6667 16 1 1.4589 1.4968 7.6794 17 1 3.3326 2.2841 9.0024 18 1 3.2049 2.8211 6.6411 19 6 4.0990 2.8846 0.0524 20 6 4.8981 3.1418 -1.2418 21 6 5.3129 1.7280 -1.7195 22 6 4.0655 0.8737 -1.3826 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6985 1.9486 0.9028 29 1 1.6553 1.9638 -0.8766 30 1 5.1057 0.5722 1.0216 31 1 4.1246 2.1762 2.5087 32 1 2.5914 1.2802 2.3886 33 1 3.8206 -1.5299 2.3358 34 1 3.8319 -1.7855 4.0974 35 1 2.4206 -1.0333 3.3163 36 1 6.1061 1.1205 3.6047 37 1 5.9844 -0.5281 4.2653 38 1 5.9729 -0.2722 2.5042 39 1 4.1400 1.8172 4.9813 40 1 2.6071 0.9207 4.8608 41 1 4.0492 -0.3561 9.1504 42 1 4.7498 2.9902 0.9202 43 1 3.2661 3.5844 0.1218 44 1 4.2695 3.6274 -1.9882 45 1 5.7797 3.7474 -1.0318 46 1 5.5058 1.7238 -2.7923 47 1 6.1839 1.3740 -1.1680 48 1 3.3025 0.9931 -2.1518 49 1 4.3395 -0.1758 -1.2754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382326084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:00:52 Heat of formation + Delta-G solvation = -55.309332 kcal Electronic energy + Delta-G solvation = -22233.676624 eV Core-core repulsion = 19386.240741 eV Total energy + Delta-G solvation = -2847.435883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72496 -38.36173 -35.32096 -34.68108 -33.33230 -30.02853 -29.67203 -28.97960 -27.89984 -26.78151 -25.46465 -23.77299 -22.35954 -21.32631 -19.71917 -19.39008 -18.86303 -16.94526 -16.72843 -16.21812 -15.88241 -15.61975 -15.24799 -14.98513 -14.65611 -14.41543 -14.19636 -14.08653 -13.83084 -13.56631 -13.29670 -12.94895 -12.81777 -12.72692 -12.59973 -12.22462 -12.18641 -12.11543 -12.03985 -11.92417 -11.80443 -11.67510 -11.61032 -11.41004 -11.26823 -11.19170 -11.14431 -10.86533 -10.75690 -10.69964 -9.09209 -8.21919 -6.21718 1.34167 1.35540 1.46580 2.38626 3.13053 3.32207 3.69393 3.78703 4.00522 4.17376 4.25967 4.26007 4.30650 4.36813 4.44588 4.57741 4.64001 4.71643 4.75209 4.81724 4.82955 4.88861 4.94125 4.97221 5.02072 5.06310 5.08776 5.10835 5.14195 5.15070 5.21495 5.22885 5.29458 5.36194 5.41143 5.43851 5.46644 5.50683 5.55814 5.59558 5.66325 5.70531 5.80696 5.85064 6.32029 6.44873 6.67316 6.85609 7.40661 8.94377 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.005071 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.426430 B = 5520.091516 C = 5895.594402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.099 4.099 4 C 0.113 3.887 5 N -0.665 5.665 6 C 0.081 3.919 7 C -0.045 4.045 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.003 4.003 11 C -0.501 4.501 12 H 0.045 0.955 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.252 1.252 19 C -0.156 4.156 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.106 4.106 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.340 0.660 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.066 0.934 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.262 0.738 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 6.584 -23.221 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.137 4.137 4 C 0.022 3.978 5 N -0.297 5.297 6 C -0.048 4.048 7 C -0.045 4.045 8 C -0.162 4.162 9 C -0.179 4.179 10 C -0.041 4.041 11 C -0.539 4.539 12 H 0.063 0.937 13 C -0.194 4.194 14 N -0.596 5.596 15 Si 0.763 3.237 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.175 1.175 19 C -0.195 4.195 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.144 4.144 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.890 6.099 -23.073 24.039 hybrid contribution 0.221 1.251 1.361 1.862 sum -2.669 7.350 -21.711 23.077 Atomic orbital electron populations 1.21795 0.96396 1.01435 1.01310 1.21368 0.94731 0.96536 1.02390 1.21681 0.93512 0.97381 1.01119 1.21647 0.94626 0.90004 0.91559 1.60642 1.16235 1.52072 1.00716 1.21834 0.99765 0.94636 0.88568 1.20311 0.95425 0.95687 0.93099 1.21482 0.98799 0.95855 1.00061 1.21664 0.95175 1.00431 1.00635 1.19593 0.95338 0.95369 0.93765 1.21427 1.34132 1.07580 0.90805 0.93719 1.25895 0.97018 0.99850 0.96598 1.70063 1.49633 1.39746 1.00180 0.85831 0.79279 0.80938 0.77612 1.19637 1.21352 1.17545 1.22967 0.99911 0.98186 0.98479 1.22295 0.99393 0.97470 0.96446 1.22522 0.97594 0.94736 1.01363 1.22402 0.97503 0.99714 0.94778 0.92160 0.92898 0.93955 0.91750 0.92351 0.93635 0.90983 0.84021 0.96077 0.91755 0.91328 0.95685 0.94633 0.94100 0.94761 0.91474 0.97254 0.97373 0.92916 0.92984 0.91986 0.90969 0.91968 0.90407 0.91975 0.90345 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.11 -2.42 5.56 30.59 0.17 -2.25 16 3 C -0.10 -2.05 3.42 30.59 0.10 -1.94 16 4 C 0.11 2.28 0.52 4.25 0.00 2.28 16 5 N -0.67 -16.27 4.25 -466.59 -1.98 -18.25 16 6 C 0.08 2.48 3.90 86.30 0.34 2.82 16 7 C -0.04 -1.69 0.60 -52.19 -0.03 -1.72 16 8 C -0.10 -3.99 8.06 71.98 0.58 -3.41 16 9 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 10 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 11 C -0.50 -28.56 8.20 25.60 0.21 -28.35 16 12 H 0.04 2.79 5.92 -2.91 -0.02 2.77 16 13 C 0.00 0.12 5.47 84.65 0.46 0.58 16 14 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 15 Si 0.94 45.46 27.47 68.60 1.88 47.34 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.25 -11.44 6.54 99.48 0.65 -10.78 16 19 C -0.16 -3.12 5.66 31.32 0.18 -2.94 16 20 C -0.12 -1.89 6.83 31.67 0.22 -1.68 16 21 C -0.12 -1.87 6.91 31.89 0.22 -1.65 16 22 C -0.11 -1.77 5.08 31.67 0.16 -1.61 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 1.27 7.41 -2.39 -0.02 1.25 16 27 H 0.06 1.54 7.49 -2.39 -0.02 1.53 16 28 H 0.04 1.08 6.62 -2.39 -0.02 1.06 16 29 H 0.07 1.28 8.04 -2.38 -0.02 1.26 16 30 H 0.34 8.12 7.00 -89.70 -0.63 7.50 16 31 H 0.02 0.66 6.55 -2.39 -0.02 0.64 16 32 H 0.06 2.04 6.20 -2.39 -0.01 2.03 16 33 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 34 H 0.02 1.09 6.61 -2.39 -0.02 1.07 16 35 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.03 1.46 6.62 -2.39 -0.02 1.45 16 38 H 0.07 2.01 6.70 -2.39 -0.02 1.99 16 39 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 40 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.05 1.20 6.44 -2.39 -0.02 1.19 16 43 H 0.06 1.25 7.67 -2.39 -0.02 1.23 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.17 7.78 -2.39 -0.02 1.15 16 49 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 Total: -1.00 -62.71 356.62 4.38 -58.32 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.20 Total: 18.98 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.98 Total: -46.08 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.68 Total: -78.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -62.71 4.38 -58.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382326084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.013 kcal (2) G-P(sol) polarization free energy of solvation -62.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds