Wall clock time and date at job start Mon Mar 30 2020 09:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46678 * 2 1 4 4 C 1.52999 * 109.52242 * 303.93573 * 3 2 1 5 5 C 1.53002 * 109.47188 * 302.85372 * 4 3 2 6 6 C 1.53111 * 109.52718 * 64.06863 * 3 2 1 7 7 C 1.53034 * 109.28243 * 177.55533 * 6 3 2 8 8 N 1.46842 * 109.52121 * 300.82298 * 7 6 3 9 9 C 1.46905 * 110.99708 * 185.83816 * 8 7 6 10 10 C 1.53003 * 109.46942 * 169.99464 * 9 8 7 11 11 C 1.53007 * 109.47025 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47122 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00360 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00536 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46854 * 90.00469 * 17 15 13 19 19 H 1.48500 * 109.47237 * 210.00188 * 17 15 13 20 20 H 1.48500 * 109.47422 * 330.00672 * 17 15 13 21 21 C 1.46844 * 111.20276 * 61.73772 * 8 7 6 22 22 C 1.53036 * 109.52420 * 298.25914 * 21 8 7 23 23 H 1.09001 * 109.47466 * 302.98813 * 1 2 3 24 24 H 1.09007 * 109.47502 * 62.98724 * 1 2 3 25 25 H 1.09003 * 109.47297 * 182.98793 * 1 2 3 26 26 H 1.08994 * 109.47098 * 239.99657 * 2 1 3 27 27 H 1.09001 * 109.46908 * 119.99577 * 2 1 3 28 28 H 1.08997 * 109.47367 * 62.85734 * 4 3 2 29 29 H 1.09000 * 109.46584 * 182.85764 * 4 3 2 30 30 H 1.09002 * 109.47150 * 178.98964 * 5 4 3 31 31 H 1.09002 * 109.47281 * 298.99708 * 5 4 3 32 32 H 1.09001 * 109.46799 * 58.99602 * 5 4 3 33 33 H 1.09000 * 109.50422 * 57.61116 * 6 3 2 34 34 H 1.09004 * 109.52994 * 297.51833 * 6 3 2 35 35 H 1.08997 * 109.46339 * 180.79785 * 7 6 3 36 36 H 1.09004 * 109.45195 * 60.82606 * 7 6 3 37 37 H 1.08996 * 109.47282 * 49.99753 * 9 8 7 38 38 H 1.08996 * 109.47202 * 289.99470 * 9 8 7 39 39 H 1.09005 * 109.46862 * 60.00293 * 10 9 8 40 40 H 1.08996 * 109.47177 * 300.00022 * 10 9 8 41 41 H 1.08997 * 109.46938 * 59.99817 * 11 10 9 42 42 H 1.09008 * 109.46884 * 300.00087 * 11 10 9 43 43 H 1.09008 * 109.46977 * 299.99550 * 12 11 10 44 44 H 1.08997 * 109.47812 * 59.99872 * 12 11 10 45 45 H 0.96998 * 120.00242 * 179.97438 * 16 15 13 46 46 H 1.08998 * 109.46151 * 58.27807 * 21 8 7 47 47 H 1.09003 * 109.46405 * 178.24330 * 21 8 7 48 48 H 1.09000 * 109.50089 * 299.24176 * 22 21 8 49 49 H 1.08991 * 109.53746 * 179.13970 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4513 2.1929 -1.1964 5 6 1.8195 1.4612 -2.4887 6 6 1.6155 2.1354 1.2978 7 6 2.1798 3.5577 1.3192 8 7 3.6445 3.5059 1.2273 9 6 4.2294 4.8444 1.3840 10 6 5.7473 4.7233 1.5327 11 6 6.3567 6.1173 1.6954 12 6 7.8746 5.9963 1.8434 13 6 8.4747 7.3693 2.0042 14 1 7.8372 8.2411 2.0008 15 6 9.8376 7.5126 2.1558 16 7 10.3612 8.7107 2.2967 17 14 10.9402 6.0047 2.1626 18 1 11.3766 5.7044 0.7753 19 1 12.1311 6.2661 3.0104 20 1 10.1896 4.8449 2.7074 21 6 4.0760 2.8873 -0.0326 22 6 3.5682 1.4449 -0.0944 23 1 -0.3634 0.5595 0.8620 24 1 -0.3634 0.4668 -0.9156 25 1 -0.3634 -1.0263 0.0536 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.3664 2.2365 -1.1000 29 1 1.8545 3.2052 -1.2245 30 1 1.3851 1.9858 -3.3397 31 1 2.9041 1.4333 -2.5941 32 1 1.4316 0.4432 -2.4529 33 1 2.0016 1.5778 2.1511 34 1 0.5274 2.1747 1.3509 35 1 1.8913 4.0490 2.2484 36 1 1.7825 4.1187 0.4733 37 1 3.8142 5.3206 2.2722 38 1 3.9972 5.4474 0.5063 39 1 6.1626 4.2471 0.6445 40 1 5.9795 4.1202 2.4105 41 1 5.9414 6.5940 2.5833 42 1 6.1245 6.7200 0.8173 43 1 8.1071 5.3935 2.7214 44 1 8.2896 5.5198 0.9553 45 1 11.3200 8.8115 2.4037 46 1 3.6698 3.4516 -0.8721 47 1 5.1647 2.8916 -0.0852 48 1 3.9850 0.8765 0.7370 49 1 3.8754 0.9904 -1.0362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385223855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:00:00 Heat of formation + Delta-G solvation = -39.153813 kcal Electronic energy + Delta-G solvation = -21215.265098 eV Core-core repulsion = 18368.529771 eV Total energy + Delta-G solvation = -2846.735327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30922 -36.86472 -34.45642 -32.39506 -31.77378 -30.80029 -30.61881 -28.40044 -25.51948 -24.25162 -23.73442 -22.80932 -21.49963 -20.49584 -19.95531 -18.00213 -16.61846 -16.26629 -15.42510 -15.37915 -15.20419 -14.61513 -14.25413 -14.09846 -13.83708 -13.73150 -13.01328 -12.79446 -12.64807 -12.39610 -12.31788 -12.18675 -11.99587 -11.87051 -11.63177 -11.54073 -11.45721 -11.17845 -11.02644 -10.80851 -10.68920 -10.51720 -10.33059 -10.24000 -10.09032 -9.78160 -9.61587 -9.42028 -9.10655 -8.49118 -8.17943 -5.99843 -3.97208 3.34256 3.41374 3.46547 3.94041 4.42251 4.49802 4.51883 4.55896 4.91745 4.98291 5.07604 5.10889 5.13608 5.21444 5.27510 5.34356 5.38261 5.42260 5.45908 5.50510 5.54087 5.59620 5.66197 5.69232 5.75085 5.81093 5.85069 5.89302 5.92922 5.95493 5.98464 6.03275 6.10868 6.15142 6.21457 6.23798 6.37203 6.45712 6.71807 6.82920 6.97489 7.19961 7.23870 7.39210 7.52344 7.85771 8.59770 9.05588 9.63345 11.13823 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037140 B = 0.003105 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.715508 B = 9014.333149 C = 9209.203229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.057 4.057 4 C -0.118 4.118 5 C -0.155 4.155 6 C -0.105 4.105 7 C 0.054 3.946 8 N -0.537 5.537 9 C 0.057 3.943 10 C -0.116 4.116 11 C -0.101 4.101 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.051 3.949 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.015 0.985 44 H 0.009 0.991 45 H 0.262 0.738 46 H 0.033 0.967 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.060 -18.017 -6.407 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.057 4.057 4 C -0.156 4.156 5 C -0.213 4.213 6 C -0.143 4.143 7 C -0.074 4.074 8 N -0.262 5.262 9 C -0.071 4.071 10 C -0.154 4.154 11 C -0.140 4.140 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.077 4.077 22 C -0.144 4.144 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.729 -18.214 -5.997 28.238 hybrid contribution 0.441 -0.077 -0.662 0.799 sum -20.288 -18.290 -6.659 28.116 Atomic orbital electron populations 1.21877 0.96140 1.01224 1.01989 1.21588 0.95742 0.95906 1.01854 1.20614 0.95321 0.94907 0.94888 1.21694 1.00414 0.99304 0.94143 1.21881 1.01738 1.00540 0.97090 1.21676 0.99625 0.95554 0.97418 1.22095 0.87950 0.96817 1.00566 1.61948 1.07797 1.21695 1.34759 1.22190 0.96358 0.88179 1.00331 1.21705 0.92714 0.99164 1.01804 1.21425 0.97781 0.94020 1.00732 1.19562 0.91841 0.97617 0.96063 1.21199 0.92689 0.92375 1.49436 0.91155 1.25052 0.98200 0.95729 0.94679 1.69921 1.12045 1.21918 1.50683 0.86762 0.80159 0.84065 0.78218 1.20374 1.21458 1.18931 1.22160 1.00797 0.94674 0.90040 1.21677 0.94310 0.96536 1.01920 0.92511 0.92538 0.93210 0.91863 0.92095 0.91992 0.91915 0.93209 0.92447 0.92474 0.91181 0.91678 0.91082 0.95030 0.90994 0.95220 0.92656 0.91721 0.92871 0.93164 0.96664 0.97262 0.92825 0.94914 0.90304 0.91222 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.14 37.16 0.34 -0.69 16 2 C -0.11 -0.85 4.45 -26.73 -0.12 -0.96 16 3 C -0.06 -0.48 0.32 -154.39 -0.05 -0.53 16 4 C -0.12 -0.98 3.86 -26.73 -0.10 -1.08 16 5 C -0.16 -1.18 9.17 37.16 0.34 -0.84 16 6 C -0.11 -0.95 4.56 -26.66 -0.12 -1.07 16 7 C 0.05 0.57 5.21 -3.84 -0.02 0.55 16 8 N -0.54 -6.79 4.66 -234.68 -1.09 -7.88 16 9 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 10 C -0.12 -1.93 5.14 -26.73 -0.14 -2.06 16 11 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 12 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 13 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 14 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 17 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 C 0.05 0.60 5.04 -3.84 -0.02 0.58 16 22 C -0.11 -1.04 4.65 -26.65 -0.12 -1.17 16 23 H 0.06 0.38 6.46 -51.93 -0.34 0.04 16 24 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.46 6.59 -51.93 -0.34 0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 6.60 -51.93 -0.34 0.14 16 29 H 0.06 0.60 4.93 -51.93 -0.26 0.34 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 32 H 0.06 0.40 6.25 -51.93 -0.32 0.07 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.52 6.61 -51.93 -0.34 0.18 16 35 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 36 H 0.03 0.34 6.58 -51.93 -0.34 0.00 16 37 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 38 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.05 0.91 6.43 -51.93 -0.33 0.57 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 43 H 0.02 0.37 7.20 -51.92 -0.37 0.00 16 44 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.03 0.39 6.45 -51.93 -0.34 0.05 16 47 H 0.08 1.00 6.21 -51.93 -0.32 0.68 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -30.46 350.48 -9.69 -40.15 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -9.27 Total: -4.48 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.71 Total: -22.88 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.32 Total: -35.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.46 -9.69 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385223855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.999 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds