Wall clock time and date at job start Mon Mar 30 2020 08:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46678 * 2 1 4 4 C 1.52999 * 109.52242 * 303.93573 * 3 2 1 5 5 C 1.53002 * 109.47188 * 302.85372 * 4 3 2 6 6 C 1.53111 * 109.52718 * 64.06863 * 3 2 1 7 7 C 1.53034 * 109.28243 * 177.55533 * 6 3 2 8 8 N 1.46842 * 109.52121 * 300.82298 * 7 6 3 9 9 C 1.46905 * 110.99708 * 185.83816 * 8 7 6 10 10 C 1.53003 * 109.46942 * 169.99464 * 9 8 7 11 11 C 1.53007 * 109.47025 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47122 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00360 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00536 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46854 * 90.00469 * 17 15 13 19 19 H 1.48500 * 109.47237 * 210.00188 * 17 15 13 20 20 H 1.48500 * 109.47422 * 330.00672 * 17 15 13 21 21 C 1.46844 * 111.20276 * 61.73772 * 8 7 6 22 22 C 1.53036 * 109.52420 * 298.25914 * 21 8 7 23 23 H 1.09001 * 109.47466 * 302.98813 * 1 2 3 24 24 H 1.09007 * 109.47502 * 62.98724 * 1 2 3 25 25 H 1.09003 * 109.47297 * 182.98793 * 1 2 3 26 26 H 1.08994 * 109.47098 * 239.99657 * 2 1 3 27 27 H 1.09001 * 109.46908 * 119.99577 * 2 1 3 28 28 H 1.08997 * 109.47367 * 62.85734 * 4 3 2 29 29 H 1.09000 * 109.46584 * 182.85764 * 4 3 2 30 30 H 1.09002 * 109.47150 * 178.98964 * 5 4 3 31 31 H 1.09002 * 109.47281 * 298.99708 * 5 4 3 32 32 H 1.09001 * 109.46799 * 58.99602 * 5 4 3 33 33 H 1.09000 * 109.50422 * 57.61116 * 6 3 2 34 34 H 1.09004 * 109.52994 * 297.51833 * 6 3 2 35 35 H 1.08997 * 109.46339 * 180.79785 * 7 6 3 36 36 H 1.09004 * 109.45195 * 60.82606 * 7 6 3 37 37 H 1.08996 * 109.47282 * 49.99753 * 9 8 7 38 38 H 1.08996 * 109.47202 * 289.99470 * 9 8 7 39 39 H 1.09005 * 109.46862 * 60.00293 * 10 9 8 40 40 H 1.08996 * 109.47177 * 300.00022 * 10 9 8 41 41 H 1.08997 * 109.46938 * 59.99817 * 11 10 9 42 42 H 1.09008 * 109.46884 * 300.00087 * 11 10 9 43 43 H 1.09008 * 109.46977 * 299.99550 * 12 11 10 44 44 H 1.08997 * 109.47812 * 59.99872 * 12 11 10 45 45 H 0.96998 * 120.00242 * 179.97438 * 16 15 13 46 46 H 1.08998 * 109.46151 * 58.27807 * 21 8 7 47 47 H 1.09003 * 109.46405 * 178.24330 * 21 8 7 48 48 H 1.09000 * 109.50089 * 299.24176 * 22 21 8 49 49 H 1.08991 * 109.53746 * 179.13970 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4513 2.1929 -1.1964 5 6 1.8195 1.4612 -2.4887 6 6 1.6155 2.1354 1.2978 7 6 2.1798 3.5577 1.3192 8 7 3.6445 3.5059 1.2273 9 6 4.2294 4.8444 1.3840 10 6 5.7473 4.7233 1.5327 11 6 6.3567 6.1173 1.6954 12 6 7.8746 5.9963 1.8434 13 6 8.4747 7.3693 2.0042 14 1 7.8372 8.2411 2.0008 15 6 9.8376 7.5126 2.1558 16 7 10.3612 8.7107 2.2967 17 14 10.9402 6.0047 2.1626 18 1 11.3766 5.7044 0.7753 19 1 12.1311 6.2661 3.0104 20 1 10.1896 4.8449 2.7074 21 6 4.0760 2.8873 -0.0326 22 6 3.5682 1.4449 -0.0944 23 1 -0.3634 0.5595 0.8620 24 1 -0.3634 0.4668 -0.9156 25 1 -0.3634 -1.0263 0.0536 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.3664 2.2365 -1.1000 29 1 1.8545 3.2052 -1.2245 30 1 1.3851 1.9858 -3.3397 31 1 2.9041 1.4333 -2.5941 32 1 1.4316 0.4432 -2.4529 33 1 2.0016 1.5778 2.1511 34 1 0.5274 2.1747 1.3509 35 1 1.8913 4.0490 2.2484 36 1 1.7825 4.1187 0.4733 37 1 3.8142 5.3206 2.2722 38 1 3.9972 5.4474 0.5063 39 1 6.1626 4.2471 0.6445 40 1 5.9795 4.1202 2.4105 41 1 5.9414 6.5940 2.5833 42 1 6.1245 6.7200 0.8173 43 1 8.1071 5.3935 2.7214 44 1 8.2896 5.5198 0.9553 45 1 11.3200 8.8115 2.4037 46 1 3.6698 3.4516 -0.8721 47 1 5.1647 2.8916 -0.0852 48 1 3.9850 0.8765 0.7370 49 1 3.8754 0.9904 -1.0362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385223855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:59:59 Heat of formation + Delta-G solvation = -55.828789 kcal Electronic energy + Delta-G solvation = -21215.988179 eV Core-core repulsion = 18368.529771 eV Total energy + Delta-G solvation = -2847.458409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09363 -37.89656 -36.07691 -34.31693 -32.44272 -32.03641 -31.36074 -29.85009 -26.77359 -25.21993 -24.75747 -23.57356 -22.75581 -21.75961 -21.42608 -18.86713 -18.70784 -17.08323 -16.54886 -16.41089 -16.12964 -15.91200 -15.71848 -15.04231 -14.84342 -14.78401 -14.46579 -13.98351 -13.71720 -13.61219 -13.45198 -13.20128 -12.94586 -12.87420 -12.65528 -12.55694 -12.54106 -12.23912 -12.15084 -11.97583 -11.95259 -11.72141 -11.50031 -11.35679 -11.30867 -11.21889 -11.03116 -10.85356 -10.78986 -10.76216 -9.16307 -8.30100 -6.34202 1.35159 1.37417 1.50189 2.36198 2.96156 3.05144 3.72150 3.80806 3.86086 4.04140 4.15524 4.24548 4.32937 4.35057 4.45006 4.46730 4.51719 4.57555 4.58776 4.66700 4.69057 4.73729 4.76408 4.82216 4.86916 4.89943 4.99762 5.04056 5.11186 5.12395 5.13906 5.19480 5.19905 5.21970 5.26692 5.31837 5.38091 5.40832 5.46860 5.55338 5.57440 5.64796 5.68047 5.71647 6.18959 6.25565 6.29698 6.73911 7.30626 8.86923 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037140 B = 0.003105 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.715508 B = 9014.333149 C = 9209.203229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.053 4.053 4 C -0.115 4.115 5 C -0.154 4.154 6 C -0.101 4.101 7 C 0.052 3.948 8 N -0.544 5.544 9 C 0.064 3.936 10 C -0.103 4.103 11 C -0.094 4.094 12 C -0.011 4.011 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.247 1.247 21 C 0.050 3.950 22 C -0.103 4.103 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.018 0.982 44 H 0.016 0.984 45 H 0.266 0.734 46 H 0.032 0.968 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.969 -20.681 -6.893 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.054 4.054 4 C -0.152 4.152 5 C -0.211 4.211 6 C -0.138 4.138 7 C -0.075 4.075 8 N -0.269 5.269 9 C -0.064 4.064 10 C -0.141 4.141 11 C -0.132 4.132 12 C -0.049 4.049 13 C -0.573 4.573 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.170 1.170 21 C -0.077 4.077 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.665 -20.886 -6.487 30.784 hybrid contribution 0.680 0.854 -0.512 1.206 sum -20.986 -20.032 -6.998 29.844 Atomic orbital electron populations 1.21860 0.95358 1.01713 1.02103 1.21550 0.96363 0.94903 1.01933 1.20583 0.94360 0.95712 0.94702 1.21652 1.00733 0.98485 0.94341 1.21865 1.01442 1.00970 0.96789 1.21654 1.00381 0.94316 0.97462 1.22163 0.86652 0.98057 1.00656 1.61940 1.09076 1.20514 1.35367 1.22016 0.94704 0.89266 1.00413 1.21517 0.94320 0.96384 1.01868 1.21293 0.95265 0.96397 1.00289 1.19527 0.94416 0.94653 0.96259 1.21564 0.92821 0.93521 1.49367 0.95206 1.26076 1.00016 0.99345 0.94112 1.70075 1.12739 1.24634 1.51958 0.85606 0.77872 0.79901 0.78959 1.19055 1.20839 1.17041 1.22179 1.00117 0.95841 0.89600 1.21650 0.95267 0.95026 1.02090 0.92506 0.92299 0.92582 0.91464 0.92377 0.91262 0.93345 0.92957 0.92958 0.91628 0.91860 0.90219 0.90982 0.94924 0.90790 0.95392 0.92246 0.91903 0.93398 0.93688 0.96362 0.96537 0.92487 0.95018 0.91495 0.91968 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.14 71.98 0.66 -0.99 16 2 C -0.11 -1.39 4.45 30.60 0.14 -1.25 16 3 C -0.05 -0.80 0.32 -52.10 -0.02 -0.82 16 4 C -0.11 -1.67 3.86 30.59 0.12 -1.55 16 5 C -0.15 -2.02 9.17 71.98 0.66 -1.36 16 6 C -0.10 -1.63 4.56 30.64 0.14 -1.49 16 7 C 0.05 1.04 5.21 86.33 0.45 1.49 16 8 N -0.54 -13.07 4.66 -896.38 -4.17 -17.24 16 9 C 0.06 1.74 4.96 86.30 0.43 2.17 16 10 C -0.10 -3.31 5.14 30.60 0.16 -3.15 16 11 C -0.09 -3.79 5.15 30.60 0.16 -3.64 16 12 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 13 C -0.53 -32.05 9.66 25.60 0.25 -31.80 16 14 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 15 C 0.00 0.05 5.47 84.65 0.46 0.51 16 16 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 17 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 21 C 0.05 1.12 5.04 86.33 0.44 1.55 16 22 C -0.10 -1.85 4.65 30.65 0.14 -1.70 16 23 H 0.06 0.61 6.46 -2.39 -0.02 0.60 16 24 H 0.06 0.61 6.43 -2.38 -0.02 0.60 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.81 6.59 -2.39 -0.02 0.79 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.92 6.60 -2.39 -0.02 0.90 16 29 H 0.05 0.85 4.93 -2.39 -0.01 0.84 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.74 6.51 -2.39 -0.02 0.72 16 32 H 0.06 0.75 6.25 -2.39 -0.01 0.74 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.08 6.61 -2.38 -0.02 1.06 16 35 H 0.07 1.41 8.02 -2.39 -0.02 1.39 16 36 H 0.03 0.65 6.58 -2.38 -0.02 0.64 16 37 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 38 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 39 H 0.06 1.86 6.43 -2.38 -0.02 1.85 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.02 0.87 7.20 -2.38 -0.02 0.85 16 44 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 45 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 46 H 0.03 0.71 6.45 -2.39 -0.02 0.70 16 47 H 0.07 1.63 6.21 -2.39 -0.01 1.62 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 1.22 6.43 -2.39 -0.02 1.20 16 Total: -1.00 -65.63 350.48 3.13 -62.50 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.83 Total: 10.87 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.30 Total: -42.45 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.87 Total: -78.31 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -65.63 3.13 -62.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385223855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.668 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds