Wall clock time and date at job start Mon Mar 30 2020 08:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.53006 * 109.46682 * 66.04945 * 3 2 1 5 5 C 1.53005 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46863 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47068 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99818 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00209 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00033 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00062 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47027 * 59.99915 * 11 9 7 13 13 H 1.48497 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47397 * 300.00465 * 11 9 7 15 15 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 16 16 C 1.52996 * 109.47112 * 58.95614 * 15 2 1 17 17 C 1.52996 * 109.46951 * 180.02562 * 16 15 2 18 18 C 1.53001 * 109.47365 * 59.99890 * 17 16 15 19 19 C 1.52996 * 109.46992 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47335 * 59.99932 * 18 17 16 21 21 C 1.52996 * 109.47176 * 299.99973 * 18 17 16 22 22 C 1.52997 * 109.46907 * 298.95472 * 15 2 1 23 23 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 24 24 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 25 25 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 26 26 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 27 27 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 28 28 H 1.08999 * 109.47085 * 299.99544 * 4 3 2 29 29 H 1.08996 * 109.47357 * 60.00343 * 4 3 2 30 30 H 1.08996 * 109.46787 * 300.00436 * 5 4 3 31 31 H 1.09004 * 109.46658 * 60.00246 * 5 4 3 32 32 H 1.08992 * 109.47573 * 300.00062 * 6 5 4 33 33 H 1.09004 * 109.47017 * 60.00790 * 6 5 4 34 34 H 0.96999 * 120.00345 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47043 * 178.95588 * 15 2 1 36 36 H 1.09006 * 109.46822 * 299.99597 * 16 15 2 37 37 H 1.08997 * 109.47474 * 59.99711 * 16 15 2 38 38 H 1.08993 * 109.47243 * 299.99585 * 17 16 15 39 39 H 1.09007 * 109.46984 * 179.97438 * 17 16 15 40 40 H 1.09009 * 109.47251 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47204 * 299.99233 * 19 18 17 42 42 H 1.08993 * 109.47460 * 59.99790 * 19 18 17 43 43 H 1.09002 * 109.46738 * 300.00488 * 20 18 17 44 44 H 1.09007 * 109.47132 * 60.00053 * 20 18 17 45 45 H 1.08996 * 109.47552 * 179.97438 * 20 18 17 46 46 H 1.09006 * 109.46822 * 300.00209 * 21 18 17 47 47 H 1.08997 * 109.47474 * 180.02562 * 21 18 17 48 48 H 1.09004 * 109.47394 * 299.99454 * 22 15 2 49 49 H 1.08990 * 109.47621 * 60.00353 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3184 5 6 2.1805 3.4855 1.3187 6 6 1.8160 4.1716 2.6367 7 6 2.3572 5.5781 2.6373 8 1 2.9058 5.9459 1.7829 9 6 2.1519 6.3953 3.7286 10 7 1.4843 5.9472 4.7693 11 14 2.8222 8.1389 3.7291 12 1 2.2308 8.8968 2.5970 13 1 2.4685 8.8049 5.0084 14 1 4.2993 8.1015 3.5816 15 6 1.9954 -0.7660 -1.1377 16 6 1.4836 -0.1556 -2.4439 17 6 2.0313 -0.9537 -3.6288 18 6 1.5616 -2.4062 -3.5261 19 6 2.1098 -3.2044 -4.7106 20 6 0.0323 -2.4502 -3.5448 21 6 2.0733 -3.0166 -2.2198 22 6 1.5261 -2.2186 -1.0352 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3632 0.5739 0.8525 25 1 -0.3633 0.4513 -0.9231 26 1 3.0798 1.3443 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 0.5473 2.0844 1.4266 29 1 2.0659 1.5014 2.1492 30 1 3.2647 3.4580 1.2105 31 1 1.7464 4.0417 0.4878 32 1 0.7318 4.1991 2.7444 33 1 2.2498 3.6155 3.4679 34 1 1.3396 6.5222 5.5370 35 1 3.0848 -0.7343 -1.1241 36 1 0.3941 -0.1874 -2.4575 37 1 1.8179 0.8793 -2.5169 38 1 3.1207 -0.9224 -3.6155 39 1 1.6663 -0.5191 -4.5594 40 1 1.7748 -4.2392 -4.6377 41 1 1.7455 -2.7698 -5.6415 42 1 3.1992 -3.1731 -4.6968 43 1 -0.3579 -1.8816 -2.7007 44 1 -0.3323 -2.0154 -4.4755 45 1 -0.3024 -3.4850 -3.4722 46 1 3.1628 -2.9852 -2.2065 47 1 1.7391 -4.0515 -2.1469 48 1 1.8908 -2.6535 -0.1046 49 1 0.4368 -2.2504 -1.0488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385251675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:06 Heat of formation + Delta-G solvation = -42.099644 kcal Electronic energy + Delta-G solvation = -21080.006487 eV Core-core repulsion = 18233.143418 eV Total energy + Delta-G solvation = -2846.863068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25343 -37.27562 -34.48932 -32.59189 -31.30524 -31.01197 -28.50345 -27.64477 -26.77054 -25.47431 -23.62022 -23.00390 -21.24660 -19.95042 -19.85444 -18.50402 -16.22275 -15.89534 -15.48484 -15.20297 -15.07239 -14.55435 -14.31589 -14.18451 -13.89323 -13.35647 -12.99048 -12.72734 -12.52062 -12.40387 -12.20346 -12.05564 -11.93236 -11.68975 -11.61363 -11.54523 -11.32429 -11.13998 -10.94496 -10.89725 -10.61388 -10.44411 -10.39103 -10.30042 -10.24367 -10.09892 -9.54869 -9.20740 -8.96714 -8.29347 -8.09818 -5.94499 -3.96659 3.36131 3.40207 3.42869 3.98861 4.40910 4.44871 4.50162 4.61558 4.80876 4.97872 5.13284 5.18096 5.22850 5.27737 5.34120 5.39155 5.40785 5.41769 5.46734 5.52870 5.59624 5.62233 5.68749 5.71653 5.73131 5.79374 5.88351 5.89187 5.97619 6.00366 6.04588 6.06833 6.13222 6.21889 6.28424 6.32146 6.37538 6.59362 6.88322 7.03737 7.16260 7.23966 7.33822 7.74698 7.91545 8.06980 8.49815 9.10740 9.66896 11.16864 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.046444 B = 0.002799 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.737227 B = 9999.821111 C =10248.000237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.086 3.914 16 C -0.156 4.156 17 C -0.102 4.102 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.106 4.106 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -19.612 -17.609 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.015 4.015 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.023 4.023 16 C -0.195 4.195 17 C -0.141 4.141 18 C -0.066 4.066 19 C -0.198 4.198 20 C -0.201 4.201 21 C -0.144 4.144 22 C -0.151 4.151 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.061 -19.784 -16.979 26.092 hybrid contribution 0.051 1.471 -0.690 1.626 sum -1.010 -18.313 -17.668 25.467 Atomic orbital electron populations 1.22500 0.88169 1.01710 1.00862 1.62273 1.07721 1.14517 1.41298 1.22232 0.99594 0.87138 0.98195 1.21675 1.00758 0.96800 0.95922 1.21594 0.99298 0.93043 1.00762 1.19078 0.96639 0.94599 0.91208 1.21261 1.34729 0.98098 1.01747 0.92859 1.25031 0.95392 0.98445 0.95666 1.69958 1.41051 1.36502 1.06093 0.86676 0.79439 0.84828 0.77152 1.20305 1.21306 1.20262 1.21729 0.99500 0.93251 0.87791 1.22288 1.01608 0.99711 0.95927 1.21515 1.00480 0.94175 0.97894 1.20549 0.95658 0.95257 0.95158 1.21864 1.00798 0.99680 0.97499 1.21966 0.94830 1.01515 1.01820 1.21568 1.00494 0.98733 0.93612 1.21629 1.01080 0.94249 0.98146 0.91709 0.90874 0.95587 0.91290 0.95056 0.92617 0.91786 0.93540 0.93803 0.96786 0.96633 0.93012 0.90359 0.91307 0.91860 0.92027 0.92278 0.92795 0.92847 0.92729 0.91995 0.93017 0.92925 0.91979 0.91996 0.91276 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.62 60.07 0.52 0.71 16 2 N -0.54 -7.02 4.75 -234.89 -1.12 -8.14 16 3 C 0.06 0.82 4.40 -3.82 -0.02 0.81 16 4 C -0.11 -2.02 5.15 -26.72 -0.14 -2.16 16 5 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 11 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.09 0.94 2.23 -67.71 -0.15 0.79 16 16 C -0.16 -1.58 4.24 -26.74 -0.11 -1.69 16 17 C -0.10 -0.88 4.73 -26.73 -0.13 -1.01 16 18 C -0.07 -0.51 0.77 -154.51 -0.12 -0.63 16 19 C -0.14 -0.96 8.47 37.16 0.31 -0.64 16 20 C -0.14 -1.10 7.78 37.16 0.29 -0.81 16 21 C -0.11 -0.85 4.73 -26.76 -0.13 -0.98 16 22 C -0.11 -1.07 4.72 -26.76 -0.13 -1.19 16 23 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 24 H 0.07 0.96 6.30 -51.93 -0.33 0.64 16 25 H 0.03 0.30 6.28 -51.93 -0.33 -0.02 16 26 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 27 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 28 H 0.06 0.99 6.47 -51.93 -0.34 0.66 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.07 0.71 4.67 -51.93 -0.24 0.46 16 37 H 0.06 0.71 6.75 -51.93 -0.35 0.36 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.62 4.71 -51.93 -0.24 0.38 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -29.99 356.89 -9.99 -39.98 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -9.48 Total: -4.67 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.48 Total: -22.76 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.38 Total: -35.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.99 -9.99 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.120 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds