Wall clock time and date at job start Mon Mar 30 2020 08:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.53006 * 109.46682 * 66.04945 * 3 2 1 5 5 C 1.53005 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46863 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47068 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99818 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00209 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00033 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00062 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47027 * 59.99915 * 11 9 7 13 13 H 1.48497 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47397 * 300.00465 * 11 9 7 15 15 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 16 16 C 1.52996 * 109.47112 * 58.95614 * 15 2 1 17 17 C 1.52996 * 109.46951 * 180.02562 * 16 15 2 18 18 C 1.53001 * 109.47365 * 59.99890 * 17 16 15 19 19 C 1.52996 * 109.46992 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47335 * 59.99932 * 18 17 16 21 21 C 1.52996 * 109.47176 * 299.99973 * 18 17 16 22 22 C 1.52997 * 109.46907 * 298.95472 * 15 2 1 23 23 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 24 24 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 25 25 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 26 26 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 27 27 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 28 28 H 1.08999 * 109.47085 * 299.99544 * 4 3 2 29 29 H 1.08996 * 109.47357 * 60.00343 * 4 3 2 30 30 H 1.08996 * 109.46787 * 300.00436 * 5 4 3 31 31 H 1.09004 * 109.46658 * 60.00246 * 5 4 3 32 32 H 1.08992 * 109.47573 * 300.00062 * 6 5 4 33 33 H 1.09004 * 109.47017 * 60.00790 * 6 5 4 34 34 H 0.96999 * 120.00345 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47043 * 178.95588 * 15 2 1 36 36 H 1.09006 * 109.46822 * 299.99597 * 16 15 2 37 37 H 1.08997 * 109.47474 * 59.99711 * 16 15 2 38 38 H 1.08993 * 109.47243 * 299.99585 * 17 16 15 39 39 H 1.09007 * 109.46984 * 179.97438 * 17 16 15 40 40 H 1.09009 * 109.47251 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47204 * 299.99233 * 19 18 17 42 42 H 1.08993 * 109.47460 * 59.99790 * 19 18 17 43 43 H 1.09002 * 109.46738 * 300.00488 * 20 18 17 44 44 H 1.09007 * 109.47132 * 60.00053 * 20 18 17 45 45 H 1.08996 * 109.47552 * 179.97438 * 20 18 17 46 46 H 1.09006 * 109.46822 * 300.00209 * 21 18 17 47 47 H 1.08997 * 109.47474 * 180.02562 * 21 18 17 48 48 H 1.09004 * 109.47394 * 299.99454 * 22 15 2 49 49 H 1.08990 * 109.47621 * 60.00353 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3184 5 6 2.1805 3.4855 1.3187 6 6 1.8160 4.1716 2.6367 7 6 2.3572 5.5781 2.6373 8 1 2.9058 5.9459 1.7829 9 6 2.1519 6.3953 3.7286 10 7 1.4843 5.9472 4.7693 11 14 2.8222 8.1389 3.7291 12 1 2.2308 8.8968 2.5970 13 1 2.4685 8.8049 5.0084 14 1 4.2993 8.1015 3.5816 15 6 1.9954 -0.7660 -1.1377 16 6 1.4836 -0.1556 -2.4439 17 6 2.0313 -0.9537 -3.6288 18 6 1.5616 -2.4062 -3.5261 19 6 2.1098 -3.2044 -4.7106 20 6 0.0323 -2.4502 -3.5448 21 6 2.0733 -3.0166 -2.2198 22 6 1.5261 -2.2186 -1.0352 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3632 0.5739 0.8525 25 1 -0.3633 0.4513 -0.9231 26 1 3.0798 1.3443 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 0.5473 2.0844 1.4266 29 1 2.0659 1.5014 2.1492 30 1 3.2647 3.4580 1.2105 31 1 1.7464 4.0417 0.4878 32 1 0.7318 4.1991 2.7444 33 1 2.2498 3.6155 3.4679 34 1 1.3396 6.5222 5.5370 35 1 3.0848 -0.7343 -1.1241 36 1 0.3941 -0.1874 -2.4575 37 1 1.8179 0.8793 -2.5169 38 1 3.1207 -0.9224 -3.6155 39 1 1.6663 -0.5191 -4.5594 40 1 1.7748 -4.2392 -4.6377 41 1 1.7455 -2.7698 -5.6415 42 1 3.1992 -3.1731 -4.6968 43 1 -0.3579 -1.8816 -2.7007 44 1 -0.3323 -2.0154 -4.4755 45 1 -0.3024 -3.4850 -3.4722 46 1 3.1628 -2.9852 -2.2065 47 1 1.7391 -4.0515 -2.1469 48 1 1.8908 -2.6535 -0.1046 49 1 0.4368 -2.2504 -1.0488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385251675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:06 Heat of formation + Delta-G solvation = -57.733203 kcal Electronic energy + Delta-G solvation = -21080.684409 eV Core-core repulsion = 18233.143418 eV Total energy + Delta-G solvation = -2847.540990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05019 -38.27702 -36.22437 -34.38190 -32.50077 -31.74938 -30.12447 -28.26252 -27.74221 -26.86080 -25.03540 -23.82574 -22.65494 -21.63035 -20.79483 -19.20308 -18.42800 -16.93399 -16.57541 -16.44203 -16.24923 -15.79437 -15.42094 -15.17613 -14.79920 -14.50067 -14.16539 -13.95974 -13.77677 -13.51698 -13.26261 -13.14976 -13.00869 -12.79171 -12.76243 -12.60997 -12.51858 -12.32561 -12.27338 -12.15063 -11.95352 -11.83453 -11.67559 -11.34444 -11.30820 -11.17517 -11.01611 -10.96448 -10.78863 -10.55289 -9.12234 -8.19913 -6.31710 1.38928 1.42613 1.50600 2.40687 2.98341 3.12503 3.73275 3.74012 3.94177 4.01666 4.11602 4.16470 4.28367 4.41152 4.45029 4.49582 4.52443 4.56073 4.60078 4.64459 4.69613 4.73278 4.85894 4.86829 4.87400 4.91988 4.97052 5.06616 5.09169 5.12421 5.16234 5.21088 5.22887 5.25166 5.26691 5.28007 5.36357 5.39546 5.49501 5.54600 5.56724 5.65960 5.77458 5.86443 6.17518 6.23875 6.27763 6.85563 7.37518 8.91892 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.046444 B = 0.002799 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.737227 B = 9999.821111 C =10248.000237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.067 3.933 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.024 3.976 7 C -0.546 4.546 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.087 3.913 16 C -0.151 4.151 17 C -0.100 4.100 18 C -0.064 4.064 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.102 4.102 22 C -0.108 4.108 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.048 0.952 32 H -0.012 1.012 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -19.954 -19.279 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.269 5.269 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.013 4.013 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.021 4.021 16 C -0.190 4.190 17 C -0.138 4.138 18 C -0.064 4.064 19 C -0.196 4.196 20 C -0.200 4.200 21 C -0.140 4.140 22 C -0.146 4.146 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.581 -20.143 -18.667 27.469 hybrid contribution -0.124 1.539 -0.141 1.550 sum -0.705 -18.604 -18.809 26.464 Atomic orbital electron populations 1.22495 0.87588 1.02519 1.00459 1.62228 1.08346 1.13464 1.42852 1.21996 0.99823 0.88095 0.96122 1.21499 1.00222 0.94839 0.97528 1.21395 0.99664 0.94664 0.97668 1.19002 0.94645 0.94396 0.93235 1.21715 1.35102 0.99314 1.02248 0.92202 1.26033 0.95487 1.03442 0.95098 1.70099 1.42158 1.38409 1.06840 0.85481 0.79118 0.78752 0.77579 1.19098 1.20730 1.19080 1.21770 0.99139 0.93868 0.87368 1.22213 1.01492 0.99158 0.96099 1.21502 1.00416 0.94633 0.97258 1.20537 0.95773 0.94685 0.95428 1.21837 1.00865 0.99869 0.97046 1.21953 0.94650 1.01852 1.01574 1.21546 1.00463 0.98993 0.93023 1.21582 1.01188 0.93239 0.98574 0.90155 0.92340 0.95039 0.91008 0.94724 0.92950 0.92867 0.93114 0.93303 0.99321 0.99327 0.92746 0.90906 0.91389 0.93099 0.92044 0.91899 0.92140 0.92586 0.92593 0.92782 0.92828 0.92232 0.91962 0.90987 0.91990 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.62 127.69 1.10 1.51 16 2 N -0.55 -13.92 4.75 -897.05 -4.26 -18.18 16 3 C 0.07 1.95 4.40 86.31 0.38 2.33 16 4 C -0.10 -3.69 5.15 30.60 0.16 -3.54 16 5 C -0.10 -4.10 5.15 30.59 0.16 -3.95 16 6 C 0.02 1.34 4.97 29.85 0.15 1.49 16 7 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 10 N -0.93 -58.56 13.29 21.45 0.28 -58.28 16 11 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.09 1.79 2.23 44.91 0.10 1.89 16 16 C -0.15 -2.85 4.24 30.59 0.13 -2.72 16 17 C -0.10 -1.55 4.73 30.59 0.14 -1.40 16 18 C -0.06 -0.86 0.77 -52.18 -0.04 -0.90 16 19 C -0.14 -1.57 8.47 71.98 0.61 -0.96 16 20 C -0.14 -1.89 7.78 71.98 0.56 -1.33 16 21 C -0.10 -1.43 4.73 30.58 0.14 -1.29 16 22 C -0.11 -1.88 4.72 30.58 0.14 -1.73 16 23 H 0.08 1.62 6.33 -2.38 -0.02 1.60 16 24 H 0.06 1.54 6.30 -2.39 -0.02 1.52 16 25 H 0.03 0.70 6.28 -2.39 -0.02 0.68 16 26 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 27 H 0.03 0.98 6.94 -2.39 -0.02 0.97 16 28 H 0.05 1.90 6.47 -2.39 -0.02 1.89 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.07 1.59 8.03 -2.39 -0.02 1.57 16 36 H 0.07 1.30 4.67 -2.38 -0.01 1.29 16 37 H 0.05 1.08 6.75 -2.39 -0.02 1.07 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.80 4.81 -2.39 -0.01 0.79 16 44 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.16 4.71 -2.39 -0.01 1.15 16 Total: -1.00 -64.23 356.89 3.35 -60.88 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.87 Total: 10.63 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 4.43 Total: -42.28 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.98 Total: -76.46 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.23 3.35 -60.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.146 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds