Wall clock time and date at job start Mon Mar 30 2020 08:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.53002 * 109.47379 * 299.99856 * 3 2 1 5 5 C 1.53001 * 109.46964 * 300.00319 * 4 3 2 6 6 C 1.52997 * 109.47049 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47127 * 174.99763 * 6 5 4 8 8 N 1.46898 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99673 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46899 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46876 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46876 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99794 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99823 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99589 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47029 * 60.00422 * 17 15 13 19 19 H 1.48503 * 109.46724 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47045 * 300.00049 * 17 15 13 21 21 C 1.53000 * 109.47333 * 59.99652 * 5 4 3 22 22 C 1.53001 * 109.47107 * 239.99811 * 2 1 3 23 23 H 1.09000 * 109.47081 * 59.99955 * 1 2 3 24 24 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47143 * 300.00712 * 1 2 3 26 26 H 1.09004 * 109.46800 * 119.99610 * 2 1 3 27 27 H 1.09010 * 109.47171 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47227 * 60.00223 * 3 2 1 29 29 H 1.08998 * 109.47254 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.46957 * 60.00278 * 4 3 2 31 31 H 1.09006 * 109.47074 * 300.00049 * 5 4 3 32 32 H 1.09001 * 109.46832 * 55.00084 * 6 5 4 33 33 H 1.08993 * 109.47194 * 294.99605 * 6 5 4 34 34 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 35 35 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 36 36 H 1.00897 * 111.00027 * 303.95091 * 8 7 6 37 37 H 1.09003 * 109.46666 * 299.99374 * 9 8 7 38 38 H 1.08993 * 109.47307 * 59.99613 * 9 8 7 39 39 H 1.09002 * 109.47027 * 299.99944 * 10 9 8 40 40 H 1.08997 * 109.47273 * 59.99217 * 10 9 8 41 41 H 1.08994 * 109.47712 * 299.99710 * 11 10 9 42 42 H 1.08997 * 109.47524 * 60.00287 * 11 10 9 43 43 H 1.09003 * 109.46902 * 299.99539 * 12 11 10 44 44 H 1.08993 * 109.47505 * 60.00044 * 12 11 10 45 45 H 0.97001 * 119.99793 * 179.97438 * 16 15 13 46 46 H 1.08998 * 109.46849 * 59.99881 * 21 5 4 47 47 H 1.09000 * 109.47227 * 179.97438 * 21 5 4 48 48 H 1.08998 * 109.46655 * 179.97438 * 22 2 1 49 49 H 1.08996 * 109.46747 * 300.00228 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2493 5 6 2.0400 1.4425 -2.4985 6 6 1.5295 2.1634 -3.7477 7 6 2.1396 1.5184 -4.9939 8 7 1.6500 2.2110 -6.1932 9 6 2.2157 1.6169 -7.4119 10 6 1.6844 2.3635 -8.6372 11 6 2.2741 1.7452 -9.9064 12 6 1.7432 2.4922 -11.1316 13 6 2.3235 1.8828 -12.3818 14 1 3.0027 1.0462 -12.3097 15 6 1.9866 2.3927 -13.6178 16 7 1.1592 3.4111 -13.7056 17 14 2.7065 1.6378 -15.1674 18 1 2.3138 0.2081 -15.2500 19 1 2.1912 2.3627 -16.3566 20 1 4.1872 1.7430 -15.1274 21 6 1.5300 0.0000 -2.4985 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 0.8900 29 1 1.8937 3.1913 -1.2495 30 1 0.4400 2.1638 -1.2492 31 1 3.1301 1.4424 -2.4984 32 1 1.8176 3.2138 -3.7042 33 1 0.4433 2.0861 -3.7935 34 1 3.2259 1.5957 -4.9481 35 1 1.8516 0.4680 -5.0373 36 1 0.6415 2.2095 -6.2252 37 1 3.3026 1.6943 -7.3829 38 1 1.9276 0.5675 -7.4721 39 1 0.5974 2.2867 -8.6663 40 1 1.9728 3.4128 -8.5766 41 1 3.3609 1.8224 -9.8771 42 1 1.9858 0.6958 -9.9671 43 1 0.6563 2.4153 -11.1612 44 1 2.0318 3.5414 -11.0707 45 1 0.9224 3.7701 -14.5751 46 1 0.4400 0.0000 -2.4985 47 1 1.8930 -0.5137 -3.3887 48 1 3.1300 -0.7209 -1.2494 49 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385289928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:02 Heat of formation + Delta-G solvation = -64.806524 kcal Electronic energy + Delta-G solvation = -19950.267029 eV Core-core repulsion = 17102.419316 eV Total energy + Delta-G solvation = -2847.847712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.71673 -36.93813 -34.78641 -33.39635 -31.94953 -31.10281 -29.46362 -27.75549 -26.19227 -24.19874 -23.22293 -22.25829 -21.44983 -20.64384 -19.89291 -18.93126 -16.26998 -16.17545 -15.95798 -14.99207 -14.86655 -14.73823 -14.49291 -14.37806 -13.92953 -13.52449 -13.40799 -12.96040 -12.63490 -12.42198 -12.31639 -12.15206 -11.83783 -11.59351 -11.52384 -11.46117 -11.31984 -11.14273 -11.00540 -10.89026 -10.52576 -10.49073 -10.44579 -10.38898 -10.22719 -10.14372 -9.59036 -9.21843 -8.97568 -8.32160 -8.29042 -5.94959 -3.97155 3.35995 3.40006 3.42700 4.12217 4.34673 4.41686 4.47499 4.51189 4.76233 4.82981 4.99313 5.04471 5.09067 5.20011 5.22806 5.30117 5.34739 5.39439 5.40354 5.47674 5.52907 5.54393 5.59945 5.64235 5.71693 5.74255 5.77792 5.85501 5.91008 5.94418 5.96455 6.04637 6.09801 6.18107 6.21536 6.27613 6.31409 6.55736 6.86848 7.00652 7.10070 7.27888 7.47734 7.73975 7.90469 8.06287 8.49100 9.10138 9.66357 11.16349 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.055808 B = 0.002089 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.597818 B =13398.065181 C =13580.592497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.113 4.113 7 C 0.057 3.943 8 N -0.693 5.693 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.338 0.662 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -5.852 29.406 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.152 4.152 4 C -0.153 4.153 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.072 4.072 8 N -0.324 5.324 9 C -0.069 4.069 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.156 4.156 22 C -0.152 4.152 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.243 -5.238 29.308 29.773 hybrid contribution -0.128 -1.233 -0.996 1.590 sum 0.114 -6.471 28.312 29.043 Atomic orbital electron populations 1.21943 0.95399 1.01534 1.01966 1.21096 0.95936 0.96089 0.97968 1.21560 1.00494 0.95253 0.97872 1.21610 1.01005 0.98759 0.93908 1.21123 1.00373 0.94683 0.94146 1.21612 1.00214 1.00264 0.92957 1.22012 1.00114 0.95257 0.89824 1.60521 1.13166 1.56862 1.01830 1.22065 0.99762 0.95757 0.89342 1.21636 1.00012 1.00216 0.93473 1.21590 0.99373 0.99217 0.94545 1.19091 0.96216 0.95463 0.90837 1.21259 1.27331 1.15951 0.91336 0.92835 1.25041 0.95272 0.95115 0.99161 1.69959 1.34674 1.24495 1.24429 0.86663 0.79451 0.79281 0.82626 1.20299 1.21304 1.20270 1.21693 1.00965 0.95359 0.97593 1.21564 1.00494 0.98688 0.94479 0.91862 0.92997 0.93019 0.91654 0.92109 0.92220 0.92049 0.91695 0.91255 0.91090 0.92218 0.91387 0.95375 0.84469 0.91395 0.95708 0.92795 0.91679 0.93465 0.93715 0.96750 0.96597 0.93009 0.91746 0.91883 0.92110 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.50 37.16 0.32 -0.63 16 2 C -0.09 -0.59 3.19 -90.62 -0.29 -0.88 16 3 C -0.11 -0.74 5.45 -26.73 -0.15 -0.88 16 4 C -0.12 -0.81 4.93 -26.73 -0.13 -0.94 16 5 C -0.08 -0.65 2.19 -90.62 -0.20 -0.85 16 6 C -0.11 -1.01 4.94 -26.73 -0.13 -1.14 16 7 C 0.06 0.61 5.44 -3.82 -0.02 0.59 16 8 N -0.69 -8.99 6.50 -113.77 -0.74 -9.73 16 9 C 0.06 0.88 5.68 -3.82 -0.02 0.86 16 10 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.12 -0.89 4.68 -26.73 -0.13 -1.02 16 22 C -0.11 -0.79 5.45 -26.73 -0.15 -0.93 16 23 H 0.06 0.42 4.81 -51.93 -0.25 0.17 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.30 6.56 -51.93 -0.34 -0.04 16 36 H 0.34 4.11 8.73 -39.29 -0.34 3.77 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 46 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 47 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -30.05 369.70 -11.12 -41.17 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -9.94 Total: -3.23 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.73 Total: -24.02 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.00 Total: -36.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.05 -11.12 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385289928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.632 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds