Wall clock time and date at job start Mon Mar 30 2020 08:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.53002 * 109.47379 * 299.99856 * 3 2 1 5 5 C 1.53001 * 109.46964 * 300.00319 * 4 3 2 6 6 C 1.52997 * 109.47049 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47127 * 174.99763 * 6 5 4 8 8 N 1.46898 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99673 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46899 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46876 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46876 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99794 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99823 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99589 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47029 * 60.00422 * 17 15 13 19 19 H 1.48503 * 109.46724 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47045 * 300.00049 * 17 15 13 21 21 C 1.53000 * 109.47333 * 59.99652 * 5 4 3 22 22 C 1.53001 * 109.47107 * 239.99811 * 2 1 3 23 23 H 1.09000 * 109.47081 * 59.99955 * 1 2 3 24 24 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47143 * 300.00712 * 1 2 3 26 26 H 1.09004 * 109.46800 * 119.99610 * 2 1 3 27 27 H 1.09010 * 109.47171 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47227 * 60.00223 * 3 2 1 29 29 H 1.08998 * 109.47254 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.46957 * 60.00278 * 4 3 2 31 31 H 1.09006 * 109.47074 * 300.00049 * 5 4 3 32 32 H 1.09001 * 109.46832 * 55.00084 * 6 5 4 33 33 H 1.08993 * 109.47194 * 294.99605 * 6 5 4 34 34 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 35 35 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 36 36 H 1.00897 * 111.00027 * 303.95091 * 8 7 6 37 37 H 1.09003 * 109.46666 * 299.99374 * 9 8 7 38 38 H 1.08993 * 109.47307 * 59.99613 * 9 8 7 39 39 H 1.09002 * 109.47027 * 299.99944 * 10 9 8 40 40 H 1.08997 * 109.47273 * 59.99217 * 10 9 8 41 41 H 1.08994 * 109.47712 * 299.99710 * 11 10 9 42 42 H 1.08997 * 109.47524 * 60.00287 * 11 10 9 43 43 H 1.09003 * 109.46902 * 299.99539 * 12 11 10 44 44 H 1.08993 * 109.47505 * 60.00044 * 12 11 10 45 45 H 0.97001 * 119.99793 * 179.97438 * 16 15 13 46 46 H 1.08998 * 109.46849 * 59.99881 * 21 5 4 47 47 H 1.09000 * 109.47227 * 179.97438 * 21 5 4 48 48 H 1.08998 * 109.46655 * 179.97438 * 22 2 1 49 49 H 1.08996 * 109.46747 * 300.00228 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2493 5 6 2.0400 1.4425 -2.4985 6 6 1.5295 2.1634 -3.7477 7 6 2.1396 1.5184 -4.9939 8 7 1.6500 2.2110 -6.1932 9 6 2.2157 1.6169 -7.4119 10 6 1.6844 2.3635 -8.6372 11 6 2.2741 1.7452 -9.9064 12 6 1.7432 2.4922 -11.1316 13 6 2.3235 1.8828 -12.3818 14 1 3.0027 1.0462 -12.3097 15 6 1.9866 2.3927 -13.6178 16 7 1.1592 3.4111 -13.7056 17 14 2.7065 1.6378 -15.1674 18 1 2.3138 0.2081 -15.2500 19 1 2.1912 2.3627 -16.3566 20 1 4.1872 1.7430 -15.1274 21 6 1.5300 0.0000 -2.4985 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 0.8900 29 1 1.8937 3.1913 -1.2495 30 1 0.4400 2.1638 -1.2492 31 1 3.1301 1.4424 -2.4984 32 1 1.8176 3.2138 -3.7042 33 1 0.4433 2.0861 -3.7935 34 1 3.2259 1.5957 -4.9481 35 1 1.8516 0.4680 -5.0373 36 1 0.6415 2.2095 -6.2252 37 1 3.3026 1.6943 -7.3829 38 1 1.9276 0.5675 -7.4721 39 1 0.5974 2.2867 -8.6663 40 1 1.9728 3.4128 -8.5766 41 1 3.3609 1.8224 -9.8771 42 1 1.9858 0.6958 -9.9671 43 1 0.6563 2.4153 -11.1612 44 1 2.0318 3.5414 -11.0707 45 1 0.9224 3.7701 -14.5751 46 1 0.4400 0.0000 -2.4985 47 1 1.8930 -0.5137 -3.3887 48 1 3.1300 -0.7209 -1.2494 49 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385289928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:01 Heat of formation + Delta-G solvation = -80.097259 kcal Electronic energy + Delta-G solvation = -19950.930085 eV Core-core repulsion = 17102.419316 eV Total energy + Delta-G solvation = -2848.510768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30317 -38.05382 -36.24543 -34.81652 -33.54258 -31.66917 -30.70827 -28.94401 -27.14384 -25.77499 -23.93791 -23.16768 -22.75200 -21.82076 -21.23434 -19.47440 -18.43009 -17.13706 -16.75891 -16.53004 -15.94306 -15.68669 -15.55909 -15.41989 -14.68408 -14.56541 -14.33890 -14.20037 -13.76733 -13.64126 -13.51615 -13.04679 -12.96549 -12.83052 -12.76718 -12.45010 -12.36415 -12.18024 -12.12582 -12.11572 -11.97080 -11.78209 -11.57780 -11.36968 -11.31646 -11.06845 -10.99916 -10.78415 -10.71222 -10.55140 -9.34038 -8.19760 -6.31489 1.39279 1.43011 1.50965 2.40930 3.12571 3.18345 3.77608 3.80259 3.90340 4.04337 4.14597 4.20619 4.24503 4.39051 4.44379 4.49595 4.54403 4.58688 4.62158 4.67623 4.71122 4.74402 4.79537 4.83218 4.86387 4.92485 5.01292 5.04759 5.14208 5.17949 5.19751 5.23414 5.26217 5.27761 5.30734 5.33815 5.36283 5.47211 5.53515 5.54617 5.57882 5.70304 5.77506 5.86488 6.11343 6.25618 6.48027 6.85727 7.37608 8.91895 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.055808 B = 0.002089 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.597818 B =13398.065181 C =13580.592497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.105 4.105 7 C 0.060 3.940 8 N -0.700 5.700 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.546 4.546 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.117 4.117 22 C -0.114 4.114 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.343 0.657 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.050 0.950 43 H -0.010 1.010 44 H -0.011 1.011 45 H 0.264 0.736 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -7.020 30.160 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.151 4.151 5 C -0.098 4.098 6 C -0.143 4.143 7 C -0.069 4.069 8 N -0.332 5.332 9 C -0.058 4.058 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.154 4.154 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.008 0.992 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.820 -6.413 30.085 30.771 hybrid contribution -0.336 -0.836 -1.206 1.505 sum 0.484 -7.249 28.879 29.779 Atomic orbital electron populations 1.21930 0.95252 1.01619 1.01936 1.21102 0.96037 0.96004 0.97907 1.21550 1.00460 0.95280 0.97747 1.21587 1.00996 0.98700 0.93815 1.21065 1.00096 0.94789 0.93845 1.21538 1.00241 0.99786 0.92711 1.22040 0.99955 0.95498 0.89421 1.60478 1.13610 1.57234 1.01841 1.21838 0.99653 0.95566 0.88773 1.21465 0.99849 0.99696 0.93323 1.21402 0.99449 0.98897 0.93797 1.19025 0.94716 0.94595 0.93124 1.21719 1.27724 1.16400 0.92577 0.92177 1.26048 0.95535 0.95500 1.03099 1.70099 1.35908 1.25883 1.25529 0.85466 0.78933 0.78675 0.77760 1.19077 1.20750 1.19135 1.21663 1.00883 0.95134 0.97717 1.21556 1.00435 0.98799 0.94349 0.92324 0.92873 0.92609 0.91157 0.92161 0.91633 0.92124 0.91673 0.91598 0.91802 0.91958 0.91727 0.94837 0.83909 0.91347 0.95032 0.92811 0.92716 0.93125 0.93103 0.99198 0.99275 0.92759 0.91813 0.92489 0.92194 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.50 71.98 0.61 -1.05 16 2 C -0.09 -1.04 3.19 -10.79 -0.03 -1.07 16 3 C -0.11 -1.29 5.45 30.60 0.17 -1.12 16 4 C -0.11 -1.45 4.93 30.60 0.15 -1.30 16 5 C -0.08 -1.12 2.19 -10.79 -0.02 -1.14 16 6 C -0.10 -1.75 4.94 30.60 0.15 -1.60 16 7 C 0.06 1.20 5.44 86.31 0.47 1.67 16 8 N -0.70 -17.30 6.50 -513.87 -3.34 -20.64 16 9 C 0.07 2.00 5.68 86.30 0.49 2.49 16 10 C -0.11 -3.69 5.47 30.59 0.17 -3.52 16 11 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 12 C 0.02 1.24 4.97 29.85 0.15 1.38 16 13 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 16 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C -0.12 -1.60 4.68 30.60 0.14 -1.46 16 22 C -0.11 -1.40 5.45 30.60 0.17 -1.24 16 23 H 0.06 0.70 4.81 -2.39 -0.01 0.69 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.84 6.43 -2.39 -0.02 0.82 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 0.65 6.56 -2.39 -0.02 0.63 16 36 H 0.34 7.91 8.73 -89.70 -0.78 7.13 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 47 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -63.85 369.70 2.51 -61.34 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.08 Total: 13.80 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 3.46 Total: -43.60 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -3.06 Total: -78.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.85 2.51 -61.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385289928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.761 kcal (2) G-P(sol) polarization free energy of solvation -63.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds