Wall clock time and date at job start Mon Mar 30 2020 08:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 5 5 C 1.52999 * 109.46908 * 299.99322 * 4 3 2 6 6 C 1.53000 * 109.47336 * 300.00415 * 5 4 3 7 7 C 1.52999 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47231 * 64.99392 * 7 6 5 9 9 C 1.46901 * 111.00113 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47313 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47487 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47487 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47266 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99908 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47219 * 90.00285 * 17 15 13 19 19 H 1.48503 * 109.46880 * 210.00055 * 17 15 13 20 20 H 1.48495 * 109.46977 * 329.99948 * 17 15 13 21 21 C 1.53001 * 109.47068 * 59.99578 * 6 5 4 22 22 C 1.52998 * 109.47503 * 299.99844 * 21 6 5 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 29 29 H 1.08999 * 109.47123 * 59.99430 * 4 3 2 30 30 H 1.09001 * 109.46897 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47577 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47013 * 59.99949 * 5 4 3 33 33 H 1.09001 * 109.46690 * 299.99732 * 6 5 4 34 34 H 1.09001 * 109.47393 * 185.00234 * 7 6 5 35 35 H 1.09006 * 109.46626 * 304.99988 * 7 6 5 36 36 H 1.00905 * 111.00327 * 303.95742 * 8 7 6 37 37 H 1.08997 * 109.47086 * 300.00352 * 9 8 7 38 38 H 1.09001 * 109.47128 * 60.00359 * 9 8 7 39 39 H 1.09008 * 109.47138 * 300.00546 * 10 9 8 40 40 H 1.09001 * 109.46912 * 60.00005 * 10 9 8 41 41 H 1.08997 * 109.46930 * 300.00142 * 11 10 9 42 42 H 1.09001 * 109.47110 * 60.00042 * 11 10 9 43 43 H 1.08997 * 109.47151 * 300.00006 * 12 11 10 44 44 H 1.09001 * 109.46912 * 59.99920 * 12 11 10 45 45 H 0.96997 * 119.99733 * 179.97438 * 16 15 13 46 46 H 1.09008 * 109.46996 * 180.02562 * 21 6 5 47 47 H 1.09001 * 109.47239 * 60.00491 * 21 6 5 48 48 H 1.08998 * 109.46910 * 300.00596 * 22 21 6 49 49 H 1.08993 * 109.47123 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3073 5 6 2.2453 1.3701 -2.4890 6 6 3.7701 1.3719 -2.3633 7 6 4.3801 0.6148 -3.5446 8 7 4.0920 1.3374 -4.7907 9 6 4.6633 0.6377 -5.9491 10 6 4.3438 1.4189 -7.2253 11 6 4.9383 0.6899 -8.4319 12 6 4.6182 1.4708 -9.7081 13 6 5.2033 0.7523 -10.8967 14 1 5.7492 -0.1688 -10.7558 15 6 5.0425 1.2716 -12.1638 16 7 5.5535 0.6449 -13.2009 17 14 4.0989 2.8653 -12.4072 18 1 5.0369 4.0135 -12.3251 19 1 3.4451 2.8547 -13.7406 20 1 3.0644 2.9945 -11.3497 21 6 4.1748 0.6878 -1.0559 22 6 3.5649 1.4444 0.1258 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.6054 1.9815 0.8419 29 1 0.5489 2.1253 -1.3968 30 1 1.9982 3.1544 -1.3071 31 1 1.9566 1.8571 -3.4203 32 1 1.8820 0.3424 -2.4890 33 1 4.1334 2.3996 -2.3632 34 1 5.4591 0.5391 -3.4095 35 1 3.9495 -0.3852 -3.5966 36 1 3.0994 1.4771 -4.9065 37 1 5.7442 0.5619 -5.8310 38 1 4.2343 -0.3620 -6.0177 39 1 3.2629 1.4952 -7.3436 40 1 4.7731 2.4184 -7.1565 41 1 6.0192 0.6134 -8.3138 42 1 4.5086 -0.3095 -8.5005 43 1 3.5374 1.5469 -9.8260 44 1 5.0476 2.4703 -9.6398 45 1 5.4401 1.0101 -14.0924 46 1 5.2612 0.6895 -0.9661 47 1 3.8115 -0.3399 -1.0560 48 1 3.9282 2.4720 0.1257 49 1 3.8528 0.9568 1.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385381037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:56:30 Heat of formation + Delta-G solvation = -59.492612 kcal Electronic energy + Delta-G solvation = -20334.857798 eV Core-core repulsion = 17487.240514 eV Total energy + Delta-G solvation = -2847.617284 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86094 -36.85774 -34.76267 -33.27980 -32.02479 -31.04103 -30.18496 -28.36575 -25.45379 -23.87903 -23.60833 -22.50352 -21.26449 -20.82937 -19.92976 -18.69296 -16.63781 -16.29590 -15.99823 -15.24499 -14.78517 -14.76049 -14.24801 -14.19776 -14.02291 -13.73526 -13.34437 -12.91546 -12.66149 -12.60355 -12.34847 -12.25234 -12.06468 -11.74153 -11.70874 -11.48739 -11.37167 -11.22789 -11.08131 -10.88318 -10.73480 -10.51619 -10.31721 -10.25216 -10.12761 -9.84126 -9.64413 -9.42844 -9.11316 -8.49538 -8.38000 -6.00227 -3.97631 3.34308 3.41123 3.45901 4.12510 4.36776 4.40677 4.47921 4.49429 4.80751 4.85288 4.86628 5.04237 5.16004 5.17191 5.25200 5.28054 5.30761 5.33965 5.39212 5.41573 5.46848 5.54146 5.57949 5.66660 5.69924 5.72277 5.78618 5.84121 5.86222 5.89018 5.99383 6.03848 6.08044 6.10829 6.15058 6.21593 6.30869 6.42120 6.70650 6.80538 6.94615 7.14372 7.38138 7.41882 7.51424 7.85229 8.59305 9.05165 9.62866 11.13416 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.002491 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.928217 B =11239.872927 C =11483.236553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.084 4.084 7 C 0.062 3.938 8 N -0.692 5.692 9 C 0.059 3.941 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.115 4.115 22 C -0.113 4.113 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.338 0.662 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 0.883 29.939 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.106 4.106 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.103 4.103 7 C -0.067 4.067 8 N -0.323 5.323 9 C -0.070 4.070 10 C -0.156 4.156 11 C -0.139 4.139 12 C -0.052 4.052 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.559 1.311 29.807 30.779 hybrid contribution -1.026 0.019 -0.408 1.105 sum -8.585 1.330 29.399 30.656 Atomic orbital electron populations 1.21828 0.96122 1.01420 1.01803 1.21672 0.95687 0.96628 1.02076 1.21151 0.95503 0.96137 0.97798 1.21564 1.00208 0.99147 0.94225 1.21644 0.95111 1.00646 0.98185 1.21167 0.95162 1.00494 0.93481 1.21995 1.00536 0.94664 0.89508 1.60553 1.19272 1.50677 1.01836 1.22050 0.99879 0.95093 0.89981 1.21669 1.00629 0.99852 0.93457 1.21414 0.99789 0.98845 0.93883 1.19572 0.96450 0.95677 0.93458 1.21196 1.34602 1.09863 0.90064 0.91145 1.25058 0.95345 0.97254 0.96047 1.69923 1.45982 1.39776 0.98845 0.86749 0.80807 0.84201 0.77361 1.20311 1.21476 1.19006 1.21573 1.00154 0.99497 0.94054 1.21547 0.94949 1.00617 0.97954 0.93014 0.93025 0.92426 0.92392 0.91273 0.91597 0.91942 0.92025 0.91800 0.91956 0.90345 0.91211 0.95627 0.84383 0.91214 0.95553 0.92842 0.91675 0.92850 0.93082 0.96789 0.97082 0.92824 0.92060 0.91858 0.91978 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.12 -0.81 4.70 -26.73 -0.13 -0.94 16 3 C -0.09 -0.58 2.66 -90.62 -0.24 -0.83 16 4 C -0.11 -0.83 5.21 -26.73 -0.14 -0.97 16 5 C -0.12 -0.96 4.70 -26.73 -0.13 -1.09 16 6 C -0.08 -0.73 2.40 -90.62 -0.22 -0.94 16 7 C 0.06 0.64 5.14 -3.83 -0.02 0.62 16 8 N -0.69 -8.45 6.50 -113.78 -0.74 -9.19 16 9 C 0.06 0.82 5.68 -3.82 -0.02 0.80 16 10 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 11 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 12 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 17 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 21 C -0.11 -0.86 4.93 -26.73 -0.13 -0.99 16 22 C -0.11 -0.77 5.45 -26.73 -0.15 -0.91 16 23 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.50 4.83 -51.93 -0.25 0.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 32 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.34 3.88 6.98 -39.29 -0.27 3.60 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 44 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 47 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -30.39 362.99 -10.56 -40.95 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -9.76 Total: -2.70 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -1.64 Total: -24.37 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.03 Total: -36.96 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.39 -10.56 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385381037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.539 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds