Wall clock time and date at job start Mon Mar 30 2020 08:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 5 5 C 1.52999 * 109.46908 * 299.99322 * 4 3 2 6 6 C 1.53000 * 109.47336 * 300.00415 * 5 4 3 7 7 C 1.52999 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47231 * 64.99392 * 7 6 5 9 9 C 1.46901 * 111.00113 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47313 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47487 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47487 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47266 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99908 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47219 * 90.00285 * 17 15 13 19 19 H 1.48503 * 109.46880 * 210.00055 * 17 15 13 20 20 H 1.48495 * 109.46977 * 329.99948 * 17 15 13 21 21 C 1.53001 * 109.47068 * 59.99578 * 6 5 4 22 22 C 1.52998 * 109.47503 * 299.99844 * 21 6 5 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 29 29 H 1.08999 * 109.47123 * 59.99430 * 4 3 2 30 30 H 1.09001 * 109.46897 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47577 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47013 * 59.99949 * 5 4 3 33 33 H 1.09001 * 109.46690 * 299.99732 * 6 5 4 34 34 H 1.09001 * 109.47393 * 185.00234 * 7 6 5 35 35 H 1.09006 * 109.46626 * 304.99988 * 7 6 5 36 36 H 1.00905 * 111.00327 * 303.95742 * 8 7 6 37 37 H 1.08997 * 109.47086 * 300.00352 * 9 8 7 38 38 H 1.09001 * 109.47128 * 60.00359 * 9 8 7 39 39 H 1.09008 * 109.47138 * 300.00546 * 10 9 8 40 40 H 1.09001 * 109.46912 * 60.00005 * 10 9 8 41 41 H 1.08997 * 109.46930 * 300.00142 * 11 10 9 42 42 H 1.09001 * 109.47110 * 60.00042 * 11 10 9 43 43 H 1.08997 * 109.47151 * 300.00006 * 12 11 10 44 44 H 1.09001 * 109.46912 * 59.99920 * 12 11 10 45 45 H 0.96997 * 119.99733 * 179.97438 * 16 15 13 46 46 H 1.09008 * 109.46996 * 180.02562 * 21 6 5 47 47 H 1.09001 * 109.47239 * 60.00491 * 21 6 5 48 48 H 1.08998 * 109.46910 * 300.00596 * 22 21 6 49 49 H 1.08993 * 109.47123 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3073 5 6 2.2453 1.3701 -2.4890 6 6 3.7701 1.3719 -2.3633 7 6 4.3801 0.6148 -3.5446 8 7 4.0920 1.3374 -4.7907 9 6 4.6633 0.6377 -5.9491 10 6 4.3438 1.4189 -7.2253 11 6 4.9383 0.6899 -8.4319 12 6 4.6182 1.4708 -9.7081 13 6 5.2033 0.7523 -10.8967 14 1 5.7492 -0.1688 -10.7558 15 6 5.0425 1.2716 -12.1638 16 7 5.5535 0.6449 -13.2009 17 14 4.0989 2.8653 -12.4072 18 1 5.0369 4.0135 -12.3251 19 1 3.4451 2.8547 -13.7406 20 1 3.0644 2.9945 -11.3497 21 6 4.1748 0.6878 -1.0559 22 6 3.5649 1.4444 0.1258 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.6054 1.9815 0.8419 29 1 0.5489 2.1253 -1.3968 30 1 1.9982 3.1544 -1.3071 31 1 1.9566 1.8571 -3.4203 32 1 1.8820 0.3424 -2.4890 33 1 4.1334 2.3996 -2.3632 34 1 5.4591 0.5391 -3.4095 35 1 3.9495 -0.3852 -3.5966 36 1 3.0994 1.4771 -4.9065 37 1 5.7442 0.5619 -5.8310 38 1 4.2343 -0.3620 -6.0177 39 1 3.2629 1.4952 -7.3436 40 1 4.7731 2.4184 -7.1565 41 1 6.0192 0.6134 -8.3138 42 1 4.5086 -0.3095 -8.5005 43 1 3.5374 1.5469 -9.8260 44 1 5.0476 2.4703 -9.6398 45 1 5.4401 1.0101 -14.0924 46 1 5.2612 0.6895 -0.9661 47 1 3.8115 -0.3399 -1.0560 48 1 3.9282 2.4720 0.1257 49 1 3.8528 0.9568 1.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385381037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:56:29 Heat of formation + Delta-G solvation = -75.755978 kcal Electronic energy + Delta-G solvation = -20335.563030 eV Core-core repulsion = 17487.240514 eV Total energy + Delta-G solvation = -2848.322516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48248 -37.92572 -36.16959 -34.67450 -33.55511 -31.73831 -31.12021 -29.71298 -26.71467 -25.02607 -24.25561 -23.28603 -22.49337 -21.93269 -21.38358 -19.27413 -18.85928 -17.13822 -16.81459 -16.34269 -15.97856 -15.81105 -15.67508 -14.99471 -14.82607 -14.71865 -14.51988 -14.19219 -13.90798 -13.70099 -13.43787 -13.11352 -13.02163 -12.85479 -12.76386 -12.63751 -12.35634 -12.20589 -12.06539 -11.93816 -11.80189 -11.74474 -11.48309 -11.39486 -11.31347 -11.23786 -10.88782 -10.78233 -10.76515 -10.71746 -9.35361 -8.29859 -6.34007 1.36048 1.37786 1.50493 2.36539 3.05367 3.19566 3.76074 3.79264 3.89187 4.07517 4.16172 4.24511 4.26211 4.28354 4.45890 4.50643 4.54998 4.57423 4.62655 4.66047 4.68512 4.73614 4.78160 4.82031 4.87486 4.91039 4.99718 5.02679 5.10946 5.14810 5.18835 5.20421 5.21129 5.25663 5.26714 5.31882 5.41126 5.46330 5.55174 5.57068 5.60891 5.64796 5.68217 5.69257 6.10954 6.29139 6.49004 6.74192 7.30739 8.87128 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.002491 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.928217 B =11239.872927 C =11483.236553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.077 4.077 7 C 0.064 3.936 8 N -0.695 5.695 9 C 0.067 3.933 10 C -0.106 4.106 11 C -0.095 4.095 12 C -0.013 4.013 13 C -0.535 4.535 14 H 0.029 0.971 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.343 0.657 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.266 0.734 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 2.224 31.735 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.103 4.103 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.096 4.096 7 C -0.065 4.065 8 N -0.327 5.327 9 C -0.062 4.062 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.573 4.573 14 H 0.048 0.952 15 C -0.197 4.197 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.169 1.169 21 C -0.150 4.150 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.162 0.838 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.901 2.646 31.632 32.967 hybrid contribution -0.550 -0.492 -0.970 1.219 sum -9.451 2.154 30.662 32.157 Atomic orbital electron populations 1.21824 0.95913 1.01539 1.01868 1.21649 0.95860 0.96447 1.01923 1.21135 0.95425 0.96201 0.97581 1.21545 1.00349 0.98875 0.94179 1.21610 0.94675 1.00709 0.98320 1.21086 0.95407 0.99707 0.93374 1.22027 1.00501 0.94826 0.89176 1.60515 1.19680 1.50714 1.01803 1.21860 0.99874 0.94860 0.89640 1.21491 1.00700 0.99433 0.92778 1.21291 0.99693 0.98528 0.93822 1.19545 0.96215 0.95850 0.93384 1.21569 1.34428 1.08991 0.92328 0.95240 1.26098 0.96477 1.01535 0.95571 1.70079 1.47710 1.42031 0.99580 0.85585 0.79719 0.78962 0.77940 1.19129 1.20874 1.16927 1.21546 1.00255 0.99526 0.93662 1.21536 0.94954 1.00478 0.97922 0.92585 0.92913 0.92718 0.92039 0.91906 0.91114 0.91603 0.92332 0.92391 0.91949 0.91351 0.91564 0.95424 0.83782 0.91508 0.95386 0.92044 0.91746 0.93513 0.93565 0.96257 0.96447 0.92501 0.92021 0.91703 0.92144 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 71.98 0.70 -1.00 16 2 C -0.12 -1.39 4.70 30.59 0.14 -1.25 16 3 C -0.09 -0.99 2.66 -10.79 -0.03 -1.01 16 4 C -0.11 -1.46 5.21 30.60 0.16 -1.30 16 5 C -0.12 -1.70 4.70 30.59 0.14 -1.56 16 6 C -0.08 -1.22 2.40 -10.79 -0.03 -1.25 16 7 C 0.06 1.22 5.14 86.30 0.44 1.66 16 8 N -0.70 -15.80 6.50 -513.89 -3.34 -19.14 16 9 C 0.07 1.77 5.68 86.30 0.49 2.26 16 10 C -0.11 -3.30 5.47 30.59 0.17 -3.13 16 11 C -0.10 -3.79 5.15 30.59 0.16 -3.63 16 12 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 13 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 15 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 16 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 17 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 21 C -0.11 -1.50 4.93 30.59 0.15 -1.35 16 22 C -0.11 -1.32 5.45 30.59 0.17 -1.15 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.63 6.57 -2.38 -0.02 0.61 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.80 4.83 -2.39 -0.01 0.79 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.82 6.56 -2.39 -0.02 0.80 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.92 6.68 -2.39 -0.02 0.91 16 32 H 0.06 0.93 6.32 -2.39 -0.02 0.91 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.34 7.22 6.98 -89.69 -0.63 6.59 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 44 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 45 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.06 0.86 6.54 -2.39 -0.02 0.85 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -65.15 362.99 2.53 -62.63 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.19 Total: 14.74 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 3.50 Total: -44.50 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.04 Total: -80.11 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -65.15 2.53 -62.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385381037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.130 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds