Wall clock time and date at job start Mon Mar 30 2020 07:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00345 * 2 1 4 4 C 1.52998 * 109.47040 * 66.05004 * 3 2 1 5 5 O 1.42896 * 109.47338 * 65.00087 * 4 3 2 6 6 C 1.42898 * 114.00590 * 180.02562 * 5 4 3 7 7 C 1.50690 * 109.47520 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00421 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99796 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00618 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47225 * 59.99725 * 11 9 7 13 13 H 1.48498 * 109.47437 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46888 * 299.99792 * 11 9 7 15 15 C 1.46908 * 110.99623 * 236.04882 * 2 1 3 16 16 H 1.08998 * 109.47078 * 60.44059 * 15 2 1 17 17 C 1.52994 * 109.47253 * 300.43407 * 15 2 1 18 18 C 1.52994 * 109.47562 * 240.00205 * 17 15 2 19 19 C 1.53004 * 109.46880 * 300.00025 * 18 17 15 20 20 C 1.53001 * 109.47157 * 60.00274 * 19 18 17 21 21 C 1.53000 * 109.46958 * 180.43735 * 15 2 1 22 22 C 1.52999 * 109.47485 * 59.99838 * 21 15 2 23 23 C 1.52999 * 109.47318 * 59.99903 * 18 17 15 24 24 H 1.08994 * 109.46997 * 178.38231 * 1 2 3 25 25 H 1.09000 * 109.46470 * 298.37654 * 1 2 3 26 26 H 1.08998 * 109.47214 * 58.37389 * 1 2 3 27 27 H 1.09003 * 109.47673 * 186.04710 * 3 2 1 28 28 H 1.09002 * 109.47226 * 306.05049 * 3 2 1 29 29 H 1.09001 * 109.47278 * 185.00258 * 4 3 2 30 30 H 1.09003 * 109.47363 * 305.00148 * 4 3 2 31 31 H 1.09007 * 109.47091 * 300.00052 * 6 5 4 32 32 H 1.08997 * 109.47424 * 59.99206 * 6 5 4 33 33 H 0.96994 * 120.00104 * 179.97438 * 10 9 7 34 34 H 1.09007 * 109.47094 * 119.99695 * 17 15 2 35 35 H 1.08997 * 109.47198 * 0.02562 * 17 15 2 36 36 H 1.08997 * 109.47800 * 180.02562 * 18 17 15 37 37 H 1.08993 * 109.47363 * 299.99765 * 19 18 17 38 38 H 1.09005 * 109.47160 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47375 * 119.99665 * 20 19 18 40 40 H 1.09000 * 109.46456 * 239.99958 * 20 19 18 41 41 H 1.08999 * 109.47350 * 299.99917 * 21 15 2 42 42 H 1.08997 * 109.47556 * 179.97438 * 22 21 15 43 43 H 1.08992 * 109.47153 * 300.00209 * 22 21 15 44 44 H 1.08995 * 109.47401 * 180.02562 * 23 18 17 45 45 H 1.09001 * 109.47069 * 59.99964 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3183 5 8 2.2958 1.3974 2.3978 6 6 2.0217 1.9625 3.6814 7 6 2.7700 1.1932 4.7392 8 1 3.3923 0.3561 4.4594 9 6 2.6602 1.5580 6.0643 10 7 1.9027 2.5777 6.4051 11 14 3.5872 0.6039 7.3757 12 1 5.0451 0.6767 7.1033 13 1 3.3024 1.1913 8.7096 14 1 3.1504 -0.8153 7.3570 15 6 1.9954 -0.7660 -1.1377 16 1 1.6523 -0.3154 -2.0690 17 6 1.4960 -2.2098 -1.0553 18 6 2.6923 -3.1587 -0.9604 19 6 3.5736 -2.9939 -2.2003 20 6 4.0731 -1.5501 -2.2826 21 6 3.5248 -0.7524 -1.0978 22 6 4.0066 -1.3848 0.2095 23 6 3.5071 -2.8286 0.2919 24 1 -0.3633 -1.0272 -0.0290 25 1 -0.3632 0.4884 0.9042 26 1 -0.3633 0.5389 -0.8750 27 1 3.0798 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 1.9440 3.1010 1.2831 30 1 0.5534 2.0057 1.4692 31 1 2.3419 3.0044 3.6956 32 1 0.9515 1.9087 3.8811 33 1 1.8252 2.8341 7.3373 34 1 0.9155 -2.4449 -1.9474 35 1 0.8679 -2.3271 -0.1722 36 1 2.3366 -4.1873 -0.9021 37 1 2.9932 -3.2290 -3.0924 38 1 4.4262 -3.6696 -2.1325 39 1 5.1627 -1.5404 -2.2542 40 1 3.7299 -1.0996 -3.2140 41 1 3.8807 0.2762 -1.1565 42 1 5.0961 -1.3755 0.2377 43 1 3.6160 -0.8165 1.0535 44 1 4.3596 -3.5044 0.3592 45 1 2.8793 -2.9460 1.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:00 Heat of formation + Delta-G solvation = -58.736311 kcal Electronic energy + Delta-G solvation = -21820.140091 eV Core-core repulsion = 18836.722508 eV Total energy + Delta-G solvation = -2983.417583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59319 -37.23855 -35.63606 -32.64580 -31.48123 -30.63012 -30.29155 -28.39115 -26.83157 -25.28152 -22.36369 -22.28587 -21.92524 -21.65643 -20.23086 -16.71911 -16.55451 -16.32345 -16.08852 -15.75893 -15.34727 -14.73007 -14.35041 -13.96423 -13.60255 -13.54619 -12.82736 -12.49983 -12.29797 -12.08731 -12.02967 -11.91672 -11.82922 -11.75177 -11.62164 -11.47908 -11.21202 -10.99191 -10.78430 -10.68800 -10.56044 -10.26505 -9.92218 -9.73365 -9.66030 -9.57620 -9.02066 -8.71298 -8.06221 -7.92135 -6.04183 -4.04821 3.36684 3.38942 3.43257 4.08160 4.40998 4.60338 4.68786 4.82347 4.97154 5.23290 5.27307 5.32308 5.36486 5.41212 5.44645 5.47656 5.52687 5.58379 5.64532 5.69509 5.71746 5.78845 5.82966 5.85410 5.97280 6.00921 6.07420 6.12410 6.16612 6.23993 6.35370 6.36028 6.44443 6.51742 6.56027 6.65292 6.94378 7.19018 7.38612 7.42227 7.51962 7.87584 8.24807 8.70701 9.10088 9.59788 11.07545 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.004907 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.981233 B = 5704.187520 C = 6375.113175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.517 5.517 3 C 0.055 3.945 4 C 0.067 3.933 5 O -0.378 6.378 6 C 0.195 3.805 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.906 3.094 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.094 3.906 16 H 0.030 0.970 17 C -0.108 4.108 18 C -0.083 4.083 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.107 4.107 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.016 0.984 27 H 0.085 0.915 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -8.137 -18.211 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.072 4.072 4 C -0.011 4.011 5 O -0.297 6.297 6 C 0.121 3.879 7 C -0.547 4.547 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.102 4.102 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.099 4.099 22 C -0.147 4.147 23 C -0.145 4.145 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.443 -8.417 -17.636 19.547 hybrid contribution -0.131 0.349 0.047 0.376 sum 0.312 -8.068 -17.590 19.354 Atomic orbital electron populations 1.22458 0.88031 1.01708 1.00497 1.61973 1.06994 1.13333 1.41861 1.22247 1.01278 0.88156 0.95567 1.22241 0.96102 0.94451 0.88285 1.87930 1.69560 1.56839 1.15392 1.20145 0.95471 0.93439 0.78890 1.21017 1.28036 1.15202 0.90411 0.91594 1.24937 0.95726 0.95395 0.98468 1.69959 1.39159 1.27056 1.17908 0.86426 0.80163 0.80017 0.80042 1.20067 1.21263 1.20040 1.21563 0.94775 0.94017 0.91075 0.95191 1.21695 0.97408 0.93703 1.01778 1.21007 0.95422 0.98405 0.95321 1.21548 0.99136 0.96726 0.97591 1.21539 1.00242 0.95537 0.97739 1.21112 0.94029 0.99127 0.95621 1.21452 0.99079 0.95994 0.98202 1.21455 0.98923 0.96846 0.97229 0.91408 0.90859 0.96566 0.89682 0.94796 0.94618 0.94684 0.98165 0.98060 0.92739 0.92717 0.90360 0.91717 0.92575 0.92291 0.91982 0.92634 0.91265 0.93186 0.88856 0.92980 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.01 60.07 0.54 0.83 16 2 N -0.52 -7.82 3.75 -234.89 -0.88 -8.70 16 3 C 0.06 0.85 5.10 -3.83 -0.02 0.84 16 4 C 0.07 1.28 5.99 37.16 0.22 1.50 16 5 O -0.38 -9.20 10.27 -35.23 -0.36 -9.56 16 6 C 0.20 5.44 5.69 36.00 0.20 5.64 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.49 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 11 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.09 1.20 1.89 -67.71 -0.13 1.08 16 16 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 17 C -0.11 -1.27 4.79 -26.74 -0.13 -1.40 16 18 C -0.08 -0.93 3.19 -90.62 -0.29 -1.22 16 19 C -0.11 -1.12 5.71 -26.73 -0.15 -1.27 16 20 C -0.11 -1.18 5.71 -26.73 -0.15 -1.33 16 21 C -0.08 -1.02 2.27 -90.62 -0.21 -1.22 16 22 C -0.11 -1.59 5.55 -26.73 -0.15 -1.73 16 23 C -0.11 -1.40 5.71 -26.73 -0.15 -1.56 16 24 H 0.07 0.85 6.10 -51.93 -0.32 0.53 16 25 H 0.07 1.11 6.44 -51.93 -0.33 0.78 16 26 H 0.02 0.20 8.13 -51.93 -0.42 -0.23 16 27 H 0.08 1.33 5.72 -51.93 -0.30 1.04 16 28 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.65 6.37 -51.93 -0.33 0.32 16 31 H 0.00 0.02 8.14 -51.92 -0.42 -0.41 16 32 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.01 6.25 -51.93 -0.32 0.69 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.90 6.14 -51.93 -0.32 0.58 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.70 7.60 -51.93 -0.39 1.31 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -30.77 336.52 -9.49 -40.25 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -8.20 Total: -3.79 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.83 Total: -13.82 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.14 Total: -35.33 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.36 Total: -9.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.77 -9.49 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.483 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds