Wall clock time and date at job start Mon Mar 30 2020 07:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46894 * 111.00345 * 2 1
4 4 C 1.52998 * 109.47040 * 66.05004 * 3 2 1
5 5 O 1.42896 * 109.47338 * 65.00087 * 4 3 2
6 6 C 1.42898 * 114.00590 * 180.02562 * 5 4 3
7 7 C 1.50690 * 109.47520 * 180.02562 * 6 5 4
8 8 H 1.07997 * 120.00215 * 359.97438 * 7 6 5
9 9 C 1.37880 * 120.00421 * 179.97438 * 7 6 5
10 10 N 1.31522 * 119.99796 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 120.00618 * 179.97438 * 9 7 6
12 12 H 1.48494 * 109.47225 * 59.99725 * 11 9 7
13 13 H 1.48498 * 109.47437 * 180.02562 * 11 9 7
14 14 H 1.48503 * 109.46888 * 299.99792 * 11 9 7
15 15 C 1.46908 * 110.99623 * 236.04882 * 2 1 3
16 16 H 1.08998 * 109.47078 * 60.44059 * 15 2 1
17 17 C 1.52994 * 109.47253 * 300.43407 * 15 2 1
18 18 C 1.52994 * 109.47562 * 240.00205 * 17 15 2
19 19 C 1.53004 * 109.46880 * 300.00025 * 18 17 15
20 20 C 1.53001 * 109.47157 * 60.00274 * 19 18 17
21 21 C 1.53000 * 109.46958 * 180.43735 * 15 2 1
22 22 C 1.52999 * 109.47485 * 59.99838 * 21 15 2
23 23 C 1.52999 * 109.47318 * 59.99903 * 18 17 15
24 24 H 1.08994 * 109.46997 * 178.38231 * 1 2 3
25 25 H 1.09000 * 109.46470 * 298.37654 * 1 2 3
26 26 H 1.08998 * 109.47214 * 58.37389 * 1 2 3
27 27 H 1.09003 * 109.47673 * 186.04710 * 3 2 1
28 28 H 1.09002 * 109.47226 * 306.05049 * 3 2 1
29 29 H 1.09001 * 109.47278 * 185.00258 * 4 3 2
30 30 H 1.09003 * 109.47363 * 305.00148 * 4 3 2
31 31 H 1.09007 * 109.47091 * 300.00052 * 6 5 4
32 32 H 1.08997 * 109.47424 * 59.99206 * 6 5 4
33 33 H 0.96994 * 120.00104 * 179.97438 * 10 9 7
34 34 H 1.09007 * 109.47094 * 119.99695 * 17 15 2
35 35 H 1.08997 * 109.47198 * 0.02562 * 17 15 2
36 36 H 1.08997 * 109.47800 * 180.02562 * 18 17 15
37 37 H 1.08993 * 109.47363 * 299.99765 * 19 18 17
38 38 H 1.09005 * 109.47160 * 179.97438 * 19 18 17
39 39 H 1.08997 * 109.47375 * 119.99665 * 20 19 18
40 40 H 1.09000 * 109.46456 * 239.99958 * 20 19 18
41 41 H 1.08999 * 109.47350 * 299.99917 * 21 15 2
42 42 H 1.08997 * 109.47556 * 179.97438 * 22 21 15
43 43 H 1.08992 * 109.47153 * 300.00209 * 22 21 15
44 44 H 1.08995 * 109.47401 * 180.02562 * 23 18 17
45 45 H 1.09001 * 109.47069 * 59.99964 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.6316 2.0573 1.3183
5 8 2.2958 1.3974 2.3978
6 6 2.0217 1.9625 3.6814
7 6 2.7700 1.1932 4.7392
8 1 3.3923 0.3561 4.4594
9 6 2.6602 1.5580 6.0643
10 7 1.9027 2.5777 6.4051
11 14 3.5872 0.6039 7.3757
12 1 5.0451 0.6767 7.1033
13 1 3.3024 1.1913 8.7096
14 1 3.1504 -0.8153 7.3570
15 6 1.9954 -0.7660 -1.1377
16 1 1.6523 -0.3154 -2.0690
17 6 1.4960 -2.2098 -1.0553
18 6 2.6923 -3.1587 -0.9604
19 6 3.5736 -2.9939 -2.2003
20 6 4.0731 -1.5501 -2.2826
21 6 3.5248 -0.7524 -1.0978
22 6 4.0066 -1.3848 0.2095
23 6 3.5071 -2.8286 0.2919
24 1 -0.3633 -1.0272 -0.0290
25 1 -0.3632 0.4884 0.9042
26 1 -0.3633 0.5389 -0.8750
27 1 3.0798 1.3443 -0.1083
28 1 1.5611 1.9273 -0.8309
29 1 1.9440 3.1010 1.2831
30 1 0.5534 2.0057 1.4692
31 1 2.3419 3.0044 3.6956
32 1 0.9515 1.9087 3.8811
33 1 1.8252 2.8341 7.3373
34 1 0.9155 -2.4449 -1.9474
35 1 0.8679 -2.3271 -0.1722
36 1 2.3366 -4.1873 -0.9021
37 1 2.9932 -3.2290 -3.0924
38 1 4.4262 -3.6696 -2.1325
39 1 5.1627 -1.5404 -2.2542
40 1 3.7299 -1.0996 -3.2140
41 1 3.8807 0.2762 -1.1565
42 1 5.0961 -1.3755 0.2377
43 1 3.6160 -0.8165 1.0535
44 1 4.3596 -3.5044 0.3592
45 1 2.8793 -2.9460 1.1752
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385385118.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:44:59
Heat of formation + Delta-G solvation = -76.971872 kcal
Electronic energy + Delta-G solvation = -21820.930844 eV
Core-core repulsion = 18836.722508 eV
Total energy + Delta-G solvation = -2984.208336 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.58925 -38.81861 -37.12213 -34.87355 -32.46599 -31.66469 -31.51233 -29.78054
-28.74681 -26.53991 -24.46623 -23.35747 -23.12177 -22.66862 -21.40943 -18.60335
-17.81090 -17.63455 -17.26098 -17.16496 -16.69637 -16.28745 -16.15930 -15.40192
-14.95345 -14.81186 -14.44819 -13.73727 -13.60496 -13.28815 -13.19212 -13.14249
-12.92553 -12.87129 -12.82887 -12.75034 -12.71409 -12.68548 -12.35642 -12.20063
-12.08650 -11.64502 -11.45411 -11.23559 -10.84475 -10.69820 -10.66018 -10.56218
-10.14340 -9.03982 -8.30582 -6.42204 1.39088 1.44137 1.52426 2.35523
2.97286 3.03000 3.26443 3.66816 3.75595 3.88995 4.17322 4.23572
4.28596 4.40729 4.45097 4.49166 4.51622 4.54129 4.55810 4.58742
4.63858 4.65339 4.69150 4.74659 4.76291 4.85688 4.92962 5.02216
5.05795 5.13907 5.19327 5.21953 5.26765 5.39188 5.47622 5.52738
5.55378 5.56752 5.65781 5.72026 5.99393 6.22899 6.35591 6.59223
6.88720 7.29964 8.81741
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.022288 B = 0.004907 C = 0.004391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1255.981233 B = 5704.187520 C = 6375.113175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.543 5.543
3 C 0.066 3.934
4 C 0.058 3.942
5 O -0.390 6.390
6 C 0.211 3.789
7 C -0.542 4.542
8 H 0.059 0.941
9 C 0.007 3.993
10 N -0.932 5.932
11 Si 0.981 3.019
12 H -0.265 1.265
13 H -0.274 1.274
14 H -0.267 1.267
15 C 0.096 3.904
16 H 0.044 0.956
17 C -0.106 4.106
18 C -0.081 4.081
19 C -0.108 4.108
20 C -0.108 4.108
21 C -0.080 4.080
22 C -0.107 4.107
23 C -0.106 4.106
24 H 0.078 0.922
25 H 0.049 0.951
26 H 0.036 0.964
27 H 0.081 0.919
28 H 0.063 0.937
29 H 0.042 0.958
30 H 0.036 0.964
31 H -0.019 1.019
32 H -0.021 1.021
33 H 0.270 0.730
34 H 0.077 0.923
35 H 0.060 0.940
36 H 0.077 0.923
37 H 0.074 0.926
38 H 0.066 0.934
39 H 0.065 0.935
40 H 0.070 0.930
41 H 0.062 0.938
42 H 0.050 0.950
43 H 0.046 0.954
44 H 0.062 0.938
45 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.743 -9.559 -19.823 22.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.268 5.268
3 C -0.062 4.062
4 C -0.019 4.019
5 O -0.309 6.309
6 C 0.136 3.864
7 C -0.580 4.580
8 H 0.077 0.923
9 C -0.191 4.191
10 N -0.572 5.572
11 Si 0.803 3.197
12 H -0.190 1.190
13 H -0.199 1.199
14 H -0.192 1.192
15 C -0.012 4.012
16 H 0.062 0.938
17 C -0.144 4.144
18 C -0.099 4.099
19 C -0.146 4.146
20 C -0.146 4.146
21 C -0.099 4.099
22 C -0.145 4.145
23 C -0.144 4.144
24 H 0.097 0.903
25 H 0.068 0.932
26 H 0.054 0.946
27 H 0.099 0.901
28 H 0.081 0.919
29 H 0.060 0.940
30 H 0.055 0.945
31 H -0.001 1.001
32 H -0.003 1.003
33 H 0.079 0.921
34 H 0.095 0.905
35 H 0.079 0.921
36 H 0.096 0.904
37 H 0.093 0.907
38 H 0.085 0.915
39 H 0.084 0.916
40 H 0.089 0.911
41 H 0.080 0.920
42 H 0.069 0.931
43 H 0.065 0.935
44 H 0.081 0.919
45 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 0.951 -9.837 -19.276 21.662
hybrid contribution -0.330 0.838 0.524 1.042
sum 0.621 -8.999 -18.752 20.809
Atomic orbital electron populations
1.22409 0.87364 1.02437 1.00150 1.61912 1.07848 1.13196 1.43846
1.22113 1.01294 0.88841 0.93949 1.22578 0.95911 0.95104 0.88315
1.87905 1.70367 1.57456 1.15199 1.19749 0.93726 0.92314 0.80642
1.21318 1.29079 1.15787 0.91820 0.92294 1.25935 0.96283 0.96209
1.00693 1.70068 1.39949 1.28223 1.18917 0.85274 0.78911 0.78600
0.76875 1.19002 1.19857 1.19162 1.21628 0.94648 0.94372 0.90563
0.93786 1.21697 0.97606 0.93087 1.02007 1.21012 0.95158 0.98908
0.94845 1.21538 0.99340 0.96370 0.97324 1.21519 1.00471 0.95639
0.96991 1.21111 0.94186 0.99020 0.95533 1.21350 0.98933 0.96490
0.97750 1.21432 0.99230 0.96137 0.97591 0.90347 0.93236 0.94595
0.90087 0.91898 0.94005 0.94550 1.00103 1.00287 0.92112 0.90468
0.92094 0.90439 0.90738 0.91488 0.91586 0.91101 0.91996 0.93135
0.93472 0.91944 0.94164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.65 9.01 127.69 1.15 1.80 16
2 N -0.54 -16.29 3.75 -897.06 -3.36 -19.66 16
3 C 0.07 2.02 5.10 86.30 0.44 2.46 16
4 C 0.06 2.28 5.99 71.98 0.43 2.71 16
5 O -0.39 -19.90 10.27 -148.98 -1.53 -21.43 16
6 C 0.21 12.36 5.69 71.23 0.41 12.76 16
7 C -0.54 -33.44 9.43 25.60 0.24 -33.20 16
8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16
9 C 0.01 0.42 5.46 84.65 0.46 0.88 16
10 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16
11 Si 0.98 45.64 29.54 68.60 2.03 47.67 16
12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16
14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
15 C 0.10 2.29 1.89 44.91 0.09 2.37 16
16 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16
17 C -0.11 -2.28 4.79 30.59 0.15 -2.14 16
18 C -0.08 -1.64 3.19 -10.79 -0.03 -1.67 16
19 C -0.11 -1.78 5.71 30.60 0.17 -1.61 16
20 C -0.11 -1.96 5.71 30.60 0.17 -1.78 16
21 C -0.08 -1.93 2.27 -10.79 -0.02 -1.95 16
22 C -0.11 -3.16 5.55 30.60 0.17 -2.99 16
23 C -0.11 -2.76 5.71 30.60 0.17 -2.59 16
24 H 0.08 1.91 6.10 -2.39 -0.01 1.89 16
25 H 0.05 1.54 6.44 -2.39 -0.02 1.53 16
26 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16
27 H 0.08 2.55 5.72 -2.39 -0.01 2.54 16
28 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16
29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
30 H 0.04 1.41 6.37 -2.39 -0.02 1.39 16
31 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16
32 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16
33 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16
35 H 0.06 1.53 6.25 -2.39 -0.01 1.52 16
36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
38 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16
39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
41 H 0.06 1.57 6.14 -2.39 -0.01 1.55 16
42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
43 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16
44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -67.92 336.52 2.34 -65.58
By element:
Atomic # 1 Polarization: 9.03 SS G_CDS: 0.93 Total: 9.95 kcal
Atomic # 6 Polarization: -28.95 SS G_CDS: 4.00 Total: -24.95 kcal
Atomic # 7 Polarization: -73.74 SS G_CDS: -3.08 Total: -76.82 kcal
Atomic # 8 Polarization: -19.90 SS G_CDS: -1.53 Total: -21.43 kcal
Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal
Total: -67.92 2.34 -65.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385385118.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal
(2) G-P(sol) polarization free energy of solvation -67.921 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds