Wall clock time and date at job start Mon Mar 30 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00345 * 2 1 4 4 C 1.52998 * 109.47040 * 66.05004 * 3 2 1 5 5 O 1.42896 * 109.47338 * 65.00087 * 4 3 2 6 6 C 1.42898 * 114.00590 * 180.02562 * 5 4 3 7 7 C 1.50690 * 109.47520 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00421 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99796 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00618 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47225 * 59.99725 * 11 9 7 13 13 H 1.48498 * 109.47437 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46888 * 299.99792 * 11 9 7 15 15 C 1.46908 * 110.99623 * 236.04882 * 2 1 3 16 16 H 1.08998 * 109.47078 * 60.44059 * 15 2 1 17 17 C 1.52994 * 109.47253 * 300.43407 * 15 2 1 18 18 C 1.52994 * 109.47562 * 240.00205 * 17 15 2 19 19 C 1.53004 * 109.46880 * 300.00025 * 18 17 15 20 20 C 1.53001 * 109.47157 * 60.00274 * 19 18 17 21 21 C 1.53000 * 109.46958 * 180.43735 * 15 2 1 22 22 C 1.52999 * 109.47485 * 59.99838 * 21 15 2 23 23 C 1.52999 * 109.47318 * 59.99903 * 18 17 15 24 24 H 1.08994 * 109.46997 * 178.38231 * 1 2 3 25 25 H 1.09000 * 109.46470 * 298.37654 * 1 2 3 26 26 H 1.08998 * 109.47214 * 58.37389 * 1 2 3 27 27 H 1.09003 * 109.47673 * 186.04710 * 3 2 1 28 28 H 1.09002 * 109.47226 * 306.05049 * 3 2 1 29 29 H 1.09001 * 109.47278 * 185.00258 * 4 3 2 30 30 H 1.09003 * 109.47363 * 305.00148 * 4 3 2 31 31 H 1.09007 * 109.47091 * 300.00052 * 6 5 4 32 32 H 1.08997 * 109.47424 * 59.99206 * 6 5 4 33 33 H 0.96994 * 120.00104 * 179.97438 * 10 9 7 34 34 H 1.09007 * 109.47094 * 119.99695 * 17 15 2 35 35 H 1.08997 * 109.47198 * 0.02562 * 17 15 2 36 36 H 1.08997 * 109.47800 * 180.02562 * 18 17 15 37 37 H 1.08993 * 109.47363 * 299.99765 * 19 18 17 38 38 H 1.09005 * 109.47160 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47375 * 119.99665 * 20 19 18 40 40 H 1.09000 * 109.46456 * 239.99958 * 20 19 18 41 41 H 1.08999 * 109.47350 * 299.99917 * 21 15 2 42 42 H 1.08997 * 109.47556 * 179.97438 * 22 21 15 43 43 H 1.08992 * 109.47153 * 300.00209 * 22 21 15 44 44 H 1.08995 * 109.47401 * 180.02562 * 23 18 17 45 45 H 1.09001 * 109.47069 * 59.99964 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3183 5 8 2.2958 1.3974 2.3978 6 6 2.0217 1.9625 3.6814 7 6 2.7700 1.1932 4.7392 8 1 3.3923 0.3561 4.4594 9 6 2.6602 1.5580 6.0643 10 7 1.9027 2.5777 6.4051 11 14 3.5872 0.6039 7.3757 12 1 5.0451 0.6767 7.1033 13 1 3.3024 1.1913 8.7096 14 1 3.1504 -0.8153 7.3570 15 6 1.9954 -0.7660 -1.1377 16 1 1.6523 -0.3154 -2.0690 17 6 1.4960 -2.2098 -1.0553 18 6 2.6923 -3.1587 -0.9604 19 6 3.5736 -2.9939 -2.2003 20 6 4.0731 -1.5501 -2.2826 21 6 3.5248 -0.7524 -1.0978 22 6 4.0066 -1.3848 0.2095 23 6 3.5071 -2.8286 0.2919 24 1 -0.3633 -1.0272 -0.0290 25 1 -0.3632 0.4884 0.9042 26 1 -0.3633 0.5389 -0.8750 27 1 3.0798 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 1.9440 3.1010 1.2831 30 1 0.5534 2.0057 1.4692 31 1 2.3419 3.0044 3.6956 32 1 0.9515 1.9087 3.8811 33 1 1.8252 2.8341 7.3373 34 1 0.9155 -2.4449 -1.9474 35 1 0.8679 -2.3271 -0.1722 36 1 2.3366 -4.1873 -0.9021 37 1 2.9932 -3.2290 -3.0924 38 1 4.4262 -3.6696 -2.1325 39 1 5.1627 -1.5404 -2.2542 40 1 3.7299 -1.0996 -3.2140 41 1 3.8807 0.2762 -1.1565 42 1 5.0961 -1.3755 0.2377 43 1 3.6160 -0.8165 1.0535 44 1 4.3596 -3.5044 0.3592 45 1 2.8793 -2.9460 1.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:59 Heat of formation + Delta-G solvation = -76.971872 kcal Electronic energy + Delta-G solvation = -21820.930844 eV Core-core repulsion = 18836.722508 eV Total energy + Delta-G solvation = -2984.208336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58925 -38.81861 -37.12213 -34.87355 -32.46599 -31.66469 -31.51233 -29.78054 -28.74681 -26.53991 -24.46623 -23.35747 -23.12177 -22.66862 -21.40943 -18.60335 -17.81090 -17.63455 -17.26098 -17.16496 -16.69637 -16.28745 -16.15930 -15.40192 -14.95345 -14.81186 -14.44819 -13.73727 -13.60496 -13.28815 -13.19212 -13.14249 -12.92553 -12.87129 -12.82887 -12.75034 -12.71409 -12.68548 -12.35642 -12.20063 -12.08650 -11.64502 -11.45411 -11.23559 -10.84475 -10.69820 -10.66018 -10.56218 -10.14340 -9.03982 -8.30582 -6.42204 1.39088 1.44137 1.52426 2.35523 2.97286 3.03000 3.26443 3.66816 3.75595 3.88995 4.17322 4.23572 4.28596 4.40729 4.45097 4.49166 4.51622 4.54129 4.55810 4.58742 4.63858 4.65339 4.69150 4.74659 4.76291 4.85688 4.92962 5.02216 5.05795 5.13907 5.19327 5.21953 5.26765 5.39188 5.47622 5.52738 5.55378 5.56752 5.65781 5.72026 5.99393 6.22899 6.35591 6.59223 6.88720 7.29964 8.81741 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.004907 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.981233 B = 5704.187520 C = 6375.113175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.066 3.934 4 C 0.058 3.942 5 O -0.390 6.390 6 C 0.211 3.789 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.981 3.019 12 H -0.265 1.265 13 H -0.274 1.274 14 H -0.267 1.267 15 C 0.096 3.904 16 H 0.044 0.956 17 C -0.106 4.106 18 C -0.081 4.081 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.036 0.964 31 H -0.019 1.019 32 H -0.021 1.021 33 H 0.270 0.730 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -9.559 -19.823 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.062 4.062 4 C -0.019 4.019 5 O -0.309 6.309 6 C 0.136 3.864 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.803 3.197 12 H -0.190 1.190 13 H -0.199 1.199 14 H -0.192 1.192 15 C -0.012 4.012 16 H 0.062 0.938 17 C -0.144 4.144 18 C -0.099 4.099 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.144 4.144 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.055 0.945 31 H -0.001 1.001 32 H -0.003 1.003 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.951 -9.837 -19.276 21.662 hybrid contribution -0.330 0.838 0.524 1.042 sum 0.621 -8.999 -18.752 20.809 Atomic orbital electron populations 1.22409 0.87364 1.02437 1.00150 1.61912 1.07848 1.13196 1.43846 1.22113 1.01294 0.88841 0.93949 1.22578 0.95911 0.95104 0.88315 1.87905 1.70367 1.57456 1.15199 1.19749 0.93726 0.92314 0.80642 1.21318 1.29079 1.15787 0.91820 0.92294 1.25935 0.96283 0.96209 1.00693 1.70068 1.39949 1.28223 1.18917 0.85274 0.78911 0.78600 0.76875 1.19002 1.19857 1.19162 1.21628 0.94648 0.94372 0.90563 0.93786 1.21697 0.97606 0.93087 1.02007 1.21012 0.95158 0.98908 0.94845 1.21538 0.99340 0.96370 0.97324 1.21519 1.00471 0.95639 0.96991 1.21111 0.94186 0.99020 0.95533 1.21350 0.98933 0.96490 0.97750 1.21432 0.99230 0.96137 0.97591 0.90347 0.93236 0.94595 0.90087 0.91898 0.94005 0.94550 1.00103 1.00287 0.92112 0.90468 0.92094 0.90439 0.90738 0.91488 0.91586 0.91101 0.91996 0.93135 0.93472 0.91944 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.01 127.69 1.15 1.80 16 2 N -0.54 -16.29 3.75 -897.06 -3.36 -19.66 16 3 C 0.07 2.02 5.10 86.30 0.44 2.46 16 4 C 0.06 2.28 5.99 71.98 0.43 2.71 16 5 O -0.39 -19.90 10.27 -148.98 -1.53 -21.43 16 6 C 0.21 12.36 5.69 71.23 0.41 12.76 16 7 C -0.54 -33.44 9.43 25.60 0.24 -33.20 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 11 Si 0.98 45.64 29.54 68.60 2.03 47.67 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.10 2.29 1.89 44.91 0.09 2.37 16 16 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 17 C -0.11 -2.28 4.79 30.59 0.15 -2.14 16 18 C -0.08 -1.64 3.19 -10.79 -0.03 -1.67 16 19 C -0.11 -1.78 5.71 30.60 0.17 -1.61 16 20 C -0.11 -1.96 5.71 30.60 0.17 -1.78 16 21 C -0.08 -1.93 2.27 -10.79 -0.02 -1.95 16 22 C -0.11 -3.16 5.55 30.60 0.17 -2.99 16 23 C -0.11 -2.76 5.71 30.60 0.17 -2.59 16 24 H 0.08 1.91 6.10 -2.39 -0.01 1.89 16 25 H 0.05 1.54 6.44 -2.39 -0.02 1.53 16 26 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 27 H 0.08 2.55 5.72 -2.39 -0.01 2.54 16 28 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.41 6.37 -2.39 -0.02 1.39 16 31 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 32 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 33 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 1.53 6.25 -2.39 -0.01 1.52 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.57 6.14 -2.39 -0.01 1.55 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.92 336.52 2.34 -65.58 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.93 Total: 9.95 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.00 Total: -24.95 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -3.08 Total: -76.82 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.53 Total: -21.43 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.92 2.34 -65.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds