Wall clock time and date at job start Mon Mar 30 2020 07:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99783 * 2 1 4 4 C 1.52998 * 109.47289 * 66.04654 * 3 2 1 5 5 O 1.42897 * 109.47563 * 65.00113 * 4 3 2 6 6 C 1.42897 * 114.00246 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47222 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99920 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00068 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47173 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46943 * 120.00348 * 11 9 7 14 14 H 1.48504 * 109.47014 * 239.99881 * 11 9 7 15 15 C 1.46894 * 111.00066 * 236.03996 * 2 1 3 16 16 H 1.08998 * 109.46828 * 63.96161 * 15 2 1 17 17 C 1.53006 * 109.47224 * 183.95288 * 15 2 1 18 18 C 1.52998 * 109.46818 * 120.00321 * 17 15 2 19 19 C 1.52998 * 109.46998 * 299.99953 * 18 17 15 20 20 C 1.52996 * 109.47303 * 60.00342 * 19 18 17 21 21 C 1.52997 * 109.47515 * 303.95596 * 15 2 1 22 22 C 1.53000 * 109.47060 * 180.02562 * 21 15 2 23 23 C 1.52992 * 109.47451 * 60.00299 * 18 17 15 24 24 H 1.09000 * 109.47027 * 183.95956 * 1 2 3 25 25 H 1.08995 * 109.47279 * 303.95640 * 1 2 3 26 26 H 1.08999 * 109.47006 * 63.95628 * 1 2 3 27 27 H 1.09000 * 109.46880 * 186.04689 * 3 2 1 28 28 H 1.09001 * 109.47205 * 306.04165 * 3 2 1 29 29 H 1.08999 * 109.47039 * 185.00039 * 4 3 2 30 30 H 1.09000 * 109.46881 * 304.99601 * 4 3 2 31 31 H 1.08995 * 109.47009 * 299.99740 * 6 5 4 32 32 H 1.09010 * 109.46855 * 60.00158 * 6 5 4 33 33 H 0.97005 * 120.00101 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46898 * 0.02562 * 17 15 2 35 35 H 1.08995 * 109.47367 * 240.00741 * 17 15 2 36 36 H 1.09002 * 109.46792 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.47779 * 300.00041 * 19 18 17 38 38 H 1.09004 * 109.47105 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47452 * 239.99542 * 20 19 18 40 40 H 1.09000 * 109.47054 * 119.99702 * 20 19 18 41 41 H 1.09002 * 109.47153 * 59.99762 * 21 15 2 42 42 H 1.09004 * 109.46724 * 180.02562 * 22 21 15 43 43 H 1.09001 * 109.47194 * 299.99650 * 22 21 15 44 44 H 1.09005 * 109.47280 * 59.99704 * 23 18 17 45 45 H 1.09000 * 109.47344 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 8 2.2955 1.3977 2.3979 6 6 2.0222 1.9637 3.6812 7 6 2.7695 1.1936 4.7394 8 1 3.3913 0.3561 4.4598 9 6 2.6601 1.5590 6.0643 10 7 1.9033 2.5793 6.4047 11 14 3.5870 0.6050 7.3758 12 1 4.3613 -0.4895 6.7374 13 1 4.5156 1.5183 8.0890 14 1 2.6202 0.0273 8.3438 15 6 1.9955 -0.7661 -1.1374 16 1 1.7045 -0.2800 -2.0686 17 6 3.5218 -0.8264 -1.0491 18 6 3.9698 -2.2864 -0.9562 19 6 3.3609 -2.9283 0.2920 20 6 1.8346 -2.8679 0.2036 21 6 1.4261 -2.1857 -1.1036 22 6 1.9750 -2.9838 -2.2880 23 6 3.5007 -3.0440 -2.1999 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 1.9438 3.1011 1.2830 30 1 0.5531 2.0058 1.4690 31 1 2.3430 3.0053 3.6947 32 1 0.9519 1.9104 3.8813 33 1 1.8260 2.8362 7.3369 34 1 3.8560 -0.2870 -0.1628 35 1 3.9556 -0.3690 -1.9382 36 1 5.0571 -2.3294 -0.8928 37 1 3.6951 -2.3887 1.1781 38 1 3.6804 -3.9683 0.3584 39 1 1.4440 -2.2996 1.0476 40 1 1.4290 -3.8794 0.2278 41 1 0.3387 -2.1427 -1.1665 42 1 1.5689 -3.9951 -2.2640 43 1 1.6843 -2.4979 -3.2194 44 1 3.9345 -2.5866 -3.0891 45 1 3.8203 -4.0840 -2.1339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:03 Heat of formation + Delta-G solvation = -59.586855 kcal Electronic energy + Delta-G solvation = -21743.410454 eV Core-core repulsion = 18759.955989 eV Total energy + Delta-G solvation = -2983.454465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60475 -37.26656 -35.62663 -32.65117 -31.51298 -30.69744 -30.12788 -28.64371 -26.81290 -25.05791 -22.53407 -22.39205 -22.16508 -21.33795 -20.23527 -16.73007 -16.57137 -16.31745 -16.11305 -15.67653 -15.43118 -14.80847 -14.37392 -13.85017 -13.76043 -13.48310 -12.87767 -12.50389 -12.21646 -12.14865 -12.02714 -11.95447 -11.86100 -11.80989 -11.59354 -11.48720 -11.21321 -11.05212 -10.75733 -10.71984 -10.49750 -10.28615 -9.92995 -9.76867 -9.72981 -9.60432 -9.00113 -8.72604 -8.06709 -7.92293 -6.04832 -4.05286 3.33020 3.39381 3.46451 4.07942 4.40911 4.59036 4.67432 4.81330 4.96225 5.24271 5.26411 5.31913 5.36340 5.39816 5.43235 5.44499 5.51255 5.58111 5.60969 5.64973 5.68239 5.75043 5.79902 5.88898 5.99728 6.00860 6.08408 6.12497 6.13805 6.24111 6.32580 6.39350 6.43370 6.47188 6.55046 6.59396 6.74044 7.18431 7.38163 7.43254 7.51495 7.87664 8.24369 8.70292 9.10333 9.59512 11.07018 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.004787 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.043511 B = 5847.861561 C = 6517.874124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.517 5.517 3 C 0.057 3.943 4 C 0.067 3.933 5 O -0.378 6.378 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.905 3.095 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.095 3.905 16 H 0.030 0.970 17 C -0.112 4.112 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.105 4.105 21 C -0.080 4.080 22 C -0.112 4.112 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.016 0.984 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -8.667 -18.260 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.242 5.242 3 C -0.071 4.071 4 C -0.011 4.011 5 O -0.297 6.297 6 C 0.120 3.880 7 C -0.545 4.545 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.150 4.150 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.151 4.151 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.255 -8.951 -17.692 19.829 hybrid contribution -0.152 0.370 0.062 0.404 sum -0.407 -8.581 -17.630 19.612 Atomic orbital electron populations 1.22476 0.88129 1.02149 1.00041 1.61974 1.07053 1.13228 1.41897 1.22188 1.01187 0.88117 0.95560 1.22256 0.96112 0.94467 0.88281 1.87942 1.69585 1.56803 1.15413 1.20164 0.95516 0.93447 0.78923 1.21099 1.27945 1.15085 0.90392 0.91497 1.24939 0.95745 0.95404 0.98492 1.69978 1.39270 1.27088 1.17736 0.86319 0.79496 0.79822 0.81098 1.19458 1.20942 1.20921 1.21565 0.95219 0.93542 0.91040 0.95181 1.21736 0.94370 0.96575 1.02317 1.20989 0.99231 0.94855 0.94989 1.21460 0.95737 0.99605 0.97839 1.21402 0.95948 0.99186 0.97739 1.21096 0.99140 0.94038 0.95586 1.21514 0.95898 0.99858 0.97693 1.21546 0.95700 1.00033 0.97785 0.91292 0.90924 0.96592 0.89875 0.94775 0.94582 0.94634 0.98136 0.98029 0.92848 0.89622 0.92687 0.91535 0.91150 0.92980 0.90079 0.93256 0.91469 0.92084 0.92591 0.92495 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.91 60.07 0.54 0.81 16 2 N -0.52 -7.83 3.75 -234.89 -0.88 -8.71 16 3 C 0.06 0.89 5.07 -3.83 -0.02 0.87 16 4 C 0.07 1.27 6.00 37.16 0.22 1.50 16 5 O -0.38 -9.28 10.27 -35.23 -0.36 -9.64 16 6 C 0.19 5.43 5.69 36.01 0.20 5.63 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 11 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.09 1.21 1.89 -67.71 -0.13 1.09 16 16 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 17 C -0.11 -1.43 4.72 -26.73 -0.13 -1.55 16 18 C -0.08 -0.96 3.19 -90.63 -0.29 -1.25 16 19 C -0.11 -1.42 5.71 -26.73 -0.15 -1.57 16 20 C -0.11 -1.37 5.54 -26.73 -0.15 -1.52 16 21 C -0.08 -0.94 2.23 -90.62 -0.20 -1.14 16 22 C -0.11 -1.11 5.70 -26.76 -0.15 -1.26 16 23 C -0.11 -1.12 5.71 -26.76 -0.15 -1.27 16 24 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 25 H 0.07 1.10 6.21 -51.93 -0.32 0.77 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.08 1.30 6.05 -51.93 -0.31 0.99 16 28 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.66 6.26 -51.93 -0.33 0.34 16 31 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.00 0.06 8.14 -51.92 -0.42 -0.37 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.09 1.30 6.33 -51.93 -0.33 0.97 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.27 7.60 -51.93 -0.39 0.88 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.77 6.35 -51.93 -0.33 0.44 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -30.98 336.69 -9.51 -40.49 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -8.22 Total: -4.08 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.83 Total: -13.66 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.14 Total: -35.36 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.36 Total: -9.64 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.98 -9.51 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.100 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds