Wall clock time and date at job start Mon Mar 30 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99783 * 2 1 4 4 C 1.52998 * 109.47289 * 66.04654 * 3 2 1 5 5 O 1.42897 * 109.47563 * 65.00113 * 4 3 2 6 6 C 1.42897 * 114.00246 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47222 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99920 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00068 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47173 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46943 * 120.00348 * 11 9 7 14 14 H 1.48504 * 109.47014 * 239.99881 * 11 9 7 15 15 C 1.46894 * 111.00066 * 236.03996 * 2 1 3 16 16 H 1.08998 * 109.46828 * 63.96161 * 15 2 1 17 17 C 1.53006 * 109.47224 * 183.95288 * 15 2 1 18 18 C 1.52998 * 109.46818 * 120.00321 * 17 15 2 19 19 C 1.52998 * 109.46998 * 299.99953 * 18 17 15 20 20 C 1.52996 * 109.47303 * 60.00342 * 19 18 17 21 21 C 1.52997 * 109.47515 * 303.95596 * 15 2 1 22 22 C 1.53000 * 109.47060 * 180.02562 * 21 15 2 23 23 C 1.52992 * 109.47451 * 60.00299 * 18 17 15 24 24 H 1.09000 * 109.47027 * 183.95956 * 1 2 3 25 25 H 1.08995 * 109.47279 * 303.95640 * 1 2 3 26 26 H 1.08999 * 109.47006 * 63.95628 * 1 2 3 27 27 H 1.09000 * 109.46880 * 186.04689 * 3 2 1 28 28 H 1.09001 * 109.47205 * 306.04165 * 3 2 1 29 29 H 1.08999 * 109.47039 * 185.00039 * 4 3 2 30 30 H 1.09000 * 109.46881 * 304.99601 * 4 3 2 31 31 H 1.08995 * 109.47009 * 299.99740 * 6 5 4 32 32 H 1.09010 * 109.46855 * 60.00158 * 6 5 4 33 33 H 0.97005 * 120.00101 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46898 * 0.02562 * 17 15 2 35 35 H 1.08995 * 109.47367 * 240.00741 * 17 15 2 36 36 H 1.09002 * 109.46792 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.47779 * 300.00041 * 19 18 17 38 38 H 1.09004 * 109.47105 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47452 * 239.99542 * 20 19 18 40 40 H 1.09000 * 109.47054 * 119.99702 * 20 19 18 41 41 H 1.09002 * 109.47153 * 59.99762 * 21 15 2 42 42 H 1.09004 * 109.46724 * 180.02562 * 22 21 15 43 43 H 1.09001 * 109.47194 * 299.99650 * 22 21 15 44 44 H 1.09005 * 109.47280 * 59.99704 * 23 18 17 45 45 H 1.09000 * 109.47344 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 8 2.2955 1.3977 2.3979 6 6 2.0222 1.9637 3.6812 7 6 2.7695 1.1936 4.7394 8 1 3.3913 0.3561 4.4598 9 6 2.6601 1.5590 6.0643 10 7 1.9033 2.5793 6.4047 11 14 3.5870 0.6050 7.3758 12 1 4.3613 -0.4895 6.7374 13 1 4.5156 1.5183 8.0890 14 1 2.6202 0.0273 8.3438 15 6 1.9955 -0.7661 -1.1374 16 1 1.7045 -0.2800 -2.0686 17 6 3.5218 -0.8264 -1.0491 18 6 3.9698 -2.2864 -0.9562 19 6 3.3609 -2.9283 0.2920 20 6 1.8346 -2.8679 0.2036 21 6 1.4261 -2.1857 -1.1036 22 6 1.9750 -2.9838 -2.2880 23 6 3.5007 -3.0440 -2.1999 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 1.9438 3.1011 1.2830 30 1 0.5531 2.0058 1.4690 31 1 2.3430 3.0053 3.6947 32 1 0.9519 1.9104 3.8813 33 1 1.8260 2.8362 7.3369 34 1 3.8560 -0.2870 -0.1628 35 1 3.9556 -0.3690 -1.9382 36 1 5.0571 -2.3294 -0.8928 37 1 3.6951 -2.3887 1.1781 38 1 3.6804 -3.9683 0.3584 39 1 1.4440 -2.2996 1.0476 40 1 1.4290 -3.8794 0.2278 41 1 0.3387 -2.1427 -1.1665 42 1 1.5689 -3.9951 -2.2640 43 1 1.6843 -2.4979 -3.2194 44 1 3.9345 -2.5866 -3.0891 45 1 3.8203 -4.0840 -2.1339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:02 Heat of formation + Delta-G solvation = -77.995688 kcal Electronic energy + Delta-G solvation = -21744.208721 eV Core-core repulsion = 18759.955989 eV Total energy + Delta-G solvation = -2984.252732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58648 -38.84906 -37.12094 -34.88028 -32.51801 -31.61786 -31.38374 -29.99962 -28.80487 -26.30710 -24.48225 -23.53553 -23.34845 -22.38234 -21.42997 -18.61330 -17.82357 -17.62661 -17.25718 -17.13593 -16.68686 -16.30350 -16.26184 -15.26724 -15.11836 -14.80357 -14.46423 -13.67431 -13.56106 -13.47044 -13.19475 -13.07653 -12.90934 -12.86543 -12.81725 -12.79645 -12.72560 -12.65192 -12.36432 -12.21326 -12.12500 -11.63185 -11.47209 -11.21875 -10.85393 -10.72696 -10.67561 -10.57180 -10.15289 -9.04197 -8.31499 -6.43009 1.38898 1.40491 1.55454 2.35256 2.96795 3.02198 3.26356 3.67193 3.74551 3.88334 4.16450 4.23366 4.29800 4.38570 4.44932 4.46793 4.51465 4.52398 4.55532 4.57904 4.63819 4.66257 4.68383 4.73618 4.76413 4.84390 4.91856 5.01027 5.09642 5.13364 5.19500 5.20422 5.22807 5.38652 5.46726 5.51977 5.55699 5.56891 5.61790 5.67882 5.98657 6.22111 6.36047 6.58602 6.88253 7.29382 8.81290 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.004787 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.043511 B = 5847.861561 C = 6517.874124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.067 3.933 4 C 0.058 3.942 5 O -0.392 6.392 6 C 0.210 3.790 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.981 3.019 12 H -0.266 1.266 13 H -0.270 1.270 14 H -0.271 1.271 15 C 0.096 3.904 16 H 0.044 0.956 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.103 4.103 21 C -0.078 4.078 22 C -0.107 4.107 23 C -0.108 4.108 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.037 0.963 31 H -0.018 1.018 32 H -0.020 1.020 33 H 0.270 0.730 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -10.047 -19.800 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.061 4.061 4 C -0.019 4.019 5 O -0.311 6.311 6 C 0.135 3.865 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.196 1.196 15 C -0.012 4.012 16 H 0.062 0.938 17 C -0.149 4.149 18 C -0.100 4.100 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.096 4.096 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.000 1.000 32 H -0.002 1.002 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.112 -10.326 -19.258 21.852 hybrid contribution -0.309 0.841 0.518 1.035 sum -0.198 -9.485 -18.740 21.005 Atomic orbital electron populations 1.22421 0.87464 1.02432 1.00072 1.61910 1.07908 1.13124 1.43865 1.22064 1.01264 0.88781 0.93975 1.22598 0.95951 0.95143 0.88254 1.87908 1.70448 1.57499 1.15294 1.19769 0.93788 0.92340 0.80614 1.21376 1.29032 1.15656 0.91838 0.92378 1.25934 0.96287 0.96216 1.00701 1.70079 1.40008 1.28218 1.18859 0.85166 0.78304 0.78436 0.77691 1.18993 1.19494 1.19603 1.21630 0.95073 0.93939 0.90525 0.93802 1.21719 0.94577 0.97091 1.01517 1.20995 0.99365 0.94358 0.95313 1.21440 0.95960 1.00005 0.97274 1.21343 0.95778 0.99513 0.97465 1.21105 0.99503 0.93447 0.95579 1.21504 0.95715 1.00216 0.97077 1.21522 0.95760 1.00372 0.96901 0.90606 0.93110 0.94491 0.90205 0.91799 0.93903 0.94445 1.00012 1.00213 0.92097 0.92897 0.90940 0.91251 0.94757 0.91644 0.93617 0.91944 0.90966 0.90967 0.91182 0.91120 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.91 127.69 1.14 1.78 16 2 N -0.54 -16.35 3.75 -897.06 -3.36 -19.71 16 3 C 0.07 2.05 5.07 86.30 0.44 2.49 16 4 C 0.06 2.26 6.00 71.98 0.43 2.69 16 5 O -0.39 -20.13 10.27 -148.98 -1.53 -21.66 16 6 C 0.21 12.33 5.69 71.24 0.41 12.74 16 7 C -0.54 -33.48 9.43 25.60 0.24 -33.24 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.01 0.40 5.46 84.65 0.46 0.86 16 10 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 11 Si 0.98 45.70 29.54 68.60 2.03 47.73 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.10 2.31 1.89 44.92 0.09 2.40 16 16 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 17 C -0.11 -2.72 4.72 30.60 0.14 -2.58 16 18 C -0.08 -1.80 3.19 -10.80 -0.03 -1.84 16 19 C -0.11 -2.84 5.71 30.59 0.17 -2.67 16 20 C -0.10 -2.66 5.54 30.59 0.17 -2.49 16 21 C -0.08 -1.67 2.23 -10.79 -0.02 -1.70 16 22 C -0.11 -1.76 5.70 30.58 0.17 -1.58 16 23 C -0.11 -1.80 5.71 30.57 0.17 -1.62 16 24 H 0.08 1.90 6.23 -2.39 -0.01 1.89 16 25 H 0.05 1.57 6.21 -2.39 -0.01 1.55 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 2.51 6.05 -2.39 -0.01 2.49 16 28 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.45 6.26 -2.39 -0.01 1.43 16 31 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 33 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 34 H 0.05 1.65 6.33 -2.39 -0.02 1.63 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.04 1.49 7.60 -2.39 -0.02 1.47 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.49 6.35 -2.39 -0.02 1.47 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.24 336.69 2.33 -65.91 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.93 Total: 9.60 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.98 Total: -24.75 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.08 Total: -76.83 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.53 Total: -21.66 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.24 2.33 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.081 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds