Wall clock time and date at job start Mon Mar 30 2020 07:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20754 * 120.00583 * 2 1 4 4 C 1.50704 * 119.99451 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46907 * 185.76968 * 4 2 1 6 6 H 1.08997 * 109.46059 * 306.03411 * 5 4 2 7 7 C 1.53040 * 109.45038 * 66.00766 * 5 4 2 8 8 C 1.53126 * 109.27436 * 179.19151 * 7 5 4 9 9 C 1.53119 * 109.16087 * 302.33944 * 8 7 5 10 10 C 1.53046 * 109.27211 * 57.65709 * 9 8 7 11 11 N 1.46839 * 109.52411 * 300.81894 * 10 9 8 12 12 C 1.46904 * 110.99741 * 185.84318 * 11 10 9 13 13 C 1.52995 * 109.47511 * 51.30255 * 12 11 10 14 14 C 1.52999 * 109.47420 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46952 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46596 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00480 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99432 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00378 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99720 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46674 * 299.99781 * 20 18 16 23 23 H 1.48497 * 109.47253 * 59.99237 * 20 18 16 24 24 H 1.08997 * 109.47439 * 240.00275 * 1 2 3 25 25 H 1.09001 * 109.47130 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47284 * 119.99835 * 1 2 3 27 27 H 1.08999 * 109.47511 * 65.77533 * 4 2 1 28 28 H 1.09000 * 109.47588 * 305.76853 * 4 2 1 29 29 H 1.08998 * 109.50175 * 299.12733 * 7 5 4 30 30 H 1.08994 * 109.50490 * 59.21090 * 7 5 4 31 31 H 1.08992 * 109.52395 * 62.25246 * 8 7 5 32 32 H 1.09007 * 109.51887 * 182.37324 * 8 7 5 33 33 H 1.08994 * 109.50245 * 177.59444 * 9 8 7 34 34 H 1.08991 * 109.50397 * 297.68121 * 9 8 7 35 35 H 1.09006 * 109.45622 * 180.79930 * 10 9 8 36 36 H 1.09002 * 109.45806 * 60.83805 * 10 9 8 37 37 H 1.09007 * 109.47162 * 291.30274 * 12 11 10 38 38 H 1.08993 * 109.47024 * 171.30655 * 12 11 10 39 39 H 1.09007 * 109.46892 * 59.99854 * 13 12 11 40 40 H 1.09004 * 109.46823 * 300.00403 * 13 12 11 41 41 H 1.09004 * 109.46634 * 60.00111 * 14 13 12 42 42 H 1.08993 * 109.47155 * 300.00424 * 14 13 12 43 43 H 1.08995 * 109.47339 * 60.00345 * 15 14 13 44 44 H 1.09000 * 109.47349 * 299.99936 * 15 14 13 45 45 H 0.97005 * 119.99791 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7583 -1.0293 0.1455 6 1 4.0749 -0.3285 -0.6270 7 6 4.0344 -0.4267 1.5249 8 6 5.5369 -0.1709 1.6732 9 6 6.2931 -1.4868 1.4705 10 6 5.9514 -2.0587 0.0927 11 7 4.5036 -2.2863 0.0011 12 6 4.1556 -2.9632 -1.2554 13 6 5.0303 -4.2071 -1.4238 14 6 4.6674 -4.9125 -2.7321 15 6 5.5426 -6.1561 -2.9007 16 6 5.1855 -6.8505 -4.1897 17 1 4.4121 -6.4453 -4.8252 18 6 5.8464 -8.0034 -4.5576 19 7 6.7886 -8.4967 -3.7841 20 14 5.4043 -8.8638 -6.1557 21 1 6.2537 -10.0708 -6.3193 22 1 3.9748 -9.2646 -6.1230 23 1 5.6333 -7.9397 -7.2953 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.0768 -1.8311 -0.9363 28 1 1.9218 -1.9199 0.8347 29 1 3.4935 0.5142 1.6258 30 1 3.7048 -1.1208 2.2979 31 1 5.8587 0.5532 0.9249 32 1 5.7433 0.2191 2.6700 33 1 7.3657 -1.3034 1.5326 34 1 6.0001 -2.1976 2.2430 35 1 6.4772 -3.0030 -0.0491 36 1 6.2578 -1.3531 -0.6795 37 1 4.3235 -2.2851 -2.0921 38 1 3.1064 -3.2574 -1.2310 39 1 4.8625 -4.8853 -0.5871 40 1 6.0796 -3.9129 -1.4481 41 1 4.8349 -4.2345 -3.5690 42 1 3.6182 -5.2068 -2.7073 43 1 5.3756 -6.8342 -2.0639 44 1 6.5917 -5.8614 -2.9257 45 1 7.0184 -8.0497 -2.9544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385810693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:05 Heat of formation + Delta-G solvation = -71.698410 kcal Electronic energy + Delta-G solvation = -20700.636912 eV Core-core repulsion = 17716.657251 eV Total energy + Delta-G solvation = -2983.979661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31804 -38.73646 -35.40366 -33.67273 -32.96712 -31.60082 -30.69294 -28.17163 -27.28988 -24.96137 -23.48340 -22.21845 -21.14735 -20.12254 -19.84540 -19.54474 -16.65186 -16.50783 -15.97081 -15.66094 -15.18976 -14.98131 -14.46774 -14.11549 -13.83393 -13.71604 -13.67165 -13.35902 -12.77709 -12.64598 -12.54029 -12.47395 -12.18659 -12.03362 -11.84147 -11.18768 -11.13807 -10.99790 -10.78479 -10.68779 -10.62882 -10.31796 -10.21834 -10.09341 -9.79497 -9.72278 -9.56811 -8.48227 -8.29598 -8.26236 -6.32788 -4.01315 1.71524 3.45021 3.47274 3.57718 3.66053 4.13299 4.51545 4.57513 4.63899 4.78989 4.82690 4.97134 5.05250 5.07334 5.19767 5.23389 5.33801 5.37993 5.44086 5.45407 5.52052 5.63666 5.67619 5.73044 5.78782 5.83233 5.88044 5.91043 6.03061 6.06447 6.08275 6.22295 6.30128 6.41305 6.68909 6.82001 6.98011 7.12293 7.18104 7.28961 7.46336 7.59944 8.26842 8.50348 8.92662 9.71142 11.07955 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003462 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.581119 B = 8085.771100 C = 9085.436189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.355 3.645 3 O -0.458 6.458 4 C -0.174 4.174 5 C 0.094 3.906 6 H 0.045 0.955 7 C -0.113 4.113 8 C -0.119 4.119 9 C -0.117 4.117 10 C 0.050 3.950 11 N -0.534 5.534 12 C 0.052 3.948 13 C -0.120 4.120 14 C -0.102 4.102 15 C 0.008 3.992 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.068 2.932 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.006 0.994 44 H 0.005 0.995 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 17.259 11.403 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.231 3.769 3 O -0.332 6.332 4 C -0.211 4.211 5 C -0.014 4.014 6 H 0.063 0.937 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.078 4.078 11 N -0.259 5.259 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.640 4.640 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.716 16.207 10.836 21.356 hybrid contribution -0.269 1.734 0.221 1.769 sum -8.985 17.942 11.057 22.910 Atomic orbital electron populations 1.22325 0.94411 1.04829 1.04694 1.24623 0.91994 0.90265 0.70016 1.90396 1.71951 1.35231 1.35626 1.22304 0.95833 0.97448 1.05536 1.21382 0.91719 0.90473 0.97824 0.93659 1.21680 0.96559 1.00679 0.96161 1.21550 0.95351 0.97437 1.01347 1.21604 0.99412 0.96952 0.97509 1.22189 0.88333 1.00822 0.96414 1.62003 1.06135 1.21881 1.35861 1.22283 1.00549 0.95744 0.88909 1.21794 0.98726 0.95549 0.99661 1.21465 1.00159 0.98078 0.94303 1.19212 0.94415 0.92238 0.96993 1.22092 1.23088 1.12034 1.06822 0.93449 1.25859 0.94096 0.95459 1.03649 1.70778 1.29385 1.41569 1.13368 0.83555 0.75850 0.76210 0.74708 1.20774 1.21460 1.21506 0.88912 0.90147 0.88894 0.87740 0.87589 0.91003 0.91485 0.92409 0.92028 0.91723 0.91117 0.89527 0.95170 0.95269 0.90615 0.91643 0.92372 0.93548 0.93267 0.97522 0.97701 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.24 10.26 36.00 0.37 -0.87 16 2 C 0.36 3.30 6.89 -29.03 -0.20 3.10 16 3 O -0.46 -5.82 14.98 6.00 0.09 -5.73 16 4 C -0.17 -1.62 4.87 -27.88 -0.14 -1.76 16 5 C 0.09 1.10 1.55 -67.72 -0.10 1.00 16 6 H 0.05 0.61 7.83 -51.93 -0.41 0.21 16 7 C -0.11 -1.22 5.12 -26.65 -0.14 -1.36 16 8 C -0.12 -1.24 6.00 -26.60 -0.16 -1.40 16 9 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 10 C 0.05 0.64 5.02 -3.83 -0.02 0.62 16 11 N -0.53 -6.91 4.60 -226.69 -1.04 -7.96 16 12 C 0.05 0.74 4.45 -3.82 -0.02 0.72 16 13 C -0.12 -2.03 4.69 -26.73 -0.13 -2.15 16 14 C -0.10 -2.11 5.15 -26.73 -0.14 -2.25 16 15 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 16 C -0.60 -17.56 9.11 -34.43 -0.31 -17.87 16 17 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 18 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.58 13.65 55.43 0.76 -27.83 16 20 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.95 6.08 -51.93 -0.32 0.63 16 28 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.81 6.28 -51.93 -0.33 0.48 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.17 5.84 -51.93 -0.30 0.87 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.03 0.42 8.13 -51.92 -0.42 0.00 16 38 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 39 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.06 0.99 6.19 -51.93 -0.32 0.67 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 44 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 45 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -32.54 346.91 -9.66 -42.20 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.25 Total: -3.21 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -1.36 Total: -23.27 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.29 Total: -35.78 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.09 Total: -5.73 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.54 -9.66 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385810693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.498 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds